|
Taxon Oid |
3300014486
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Sorghum-associated microbial communities from plants grown in Nebraska, USA |
| Genome Name Sample Name |
Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300014486 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Unclassified |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Sorghum-associated microbial communities from plants grown in Nebraska, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.14.6 |
| Img Submission Id |
120479 |
|
Gold Analysis Project Id
|
Ga0182004
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0208554
|
|
Gold Study Id
|
Gs0128848
|
| Add Date |
03/19/2017 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.0.6 |
| Has Coverage |
True |
| Public Release Date |
05/18/2017 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Daniel Schachtman; Jeff Dangl; Maria Harrison; Rebecca Bart |
| Contact Email |
[email protected] |
| Contact Name |
Daniel Schachtman |
| Award Doi |
10.46936/10.25585/60001066 |
| Funding Program |
CSP |
| Funding Year |
2016 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA406785 |
| Ncbi Biosample Accession |
SAMN07631781 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
370.000000 |
| Geographic Location |
USA: Nebraska |
| Habitat |
Root |
| Isolation |
Sorghum root |
| Isolation Country |
8855 |
| Latitude |
41.1613 |
| Longitude |
-96.6752 |
| Sample Collection Date |
2015/7/21 |
| Host Name |
Sorghum bicolor |
| Genome Size Assembled |
842535207 |
| Gene Count Assembled |
1415212 |