|
Taxon Oid |
3300013875
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Switchgrass metagenome 2014 |
| Genome Name Sample Name |
Rhizosphere microbial communities from switchgrass unharvested rhizosphere in Austin, TX, USA - RS_233 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300013875 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Switchgrass metagenome 2014 |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.14.6 |
| Img Submission Id |
119061 |
|
Gold Analysis Project Id
|
Ga0157515
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0177758
|
|
Gold Study Id
|
Gs0120458
|
| Add Date |
03/09/2017 00:00:00 |
| Assembly Method |
Velvet 1.2.07 |
| Comments |
released by JGI data releasing policy |
| Has Coverage |
False |
| Public Release Date |
03/03/2021 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Esther Singer |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Esther Singer |
| Contact Email |
[email protected] |
| Contact Name |
Esther Singer |
| Is Published |
False |
| Sequencing Method |
Illumina HiSeq 2000 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
150.000000 |
| Geographic Location |
USA: Austin, Texas |
| Habitat |
Rhizosphere |
| Isolation |
Plant root |
| Isolation Country |
8855 |
| Latitude |
30.387 |
| Longitude |
-97.7301 |
| Host Name |
Panicum virgatum |
| Genome Size Assembled |
27851225 |
| Gene Count Assembled |
71819 |