|
Taxon Oid |
3300012492
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations |
| Genome Name Sample Name |
Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300012492 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.13.3 |
| Img Submission Id |
105321 |
|
Gold Analysis Project Id
|
Ga0157335
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0177617
|
|
Gold Study Id
|
Gs0053073
|
| Add Date |
12/08/2016 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.0.6 |
| Funding Agency |
E; D; O |
| Has Coverage |
True |
| Public Release Date |
02/07/2017 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Jeff Dangl |
| Contact Email |
[email protected] |
| Contact Name |
Jeff Dangl |
| Award Doi |
10.46936/10.25585/60000944 |
| Funding Program |
CSP |
| Funding Year |
2012 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA406161 |
| Ncbi Biosample Accession |
SAMN07632070 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Depth In Meters |
0.000000 |
| Elevation In Meters |
0.000000 |
| Geographic Location |
USA: North Carolina |
| Habitat |
Arabidopsis rhizosphere |
| Isolation |
Arabidopsis rhizosphere |
| Isolation Country |
8855 |
| Latitude |
35.9076 |
| Longitude |
-79.0506 |
| Sample Collection Date |
2010/6/13 |
| Host Name |
Arabidopsis |
| Genome Size Assembled |
101435921 |
| Gene Count Assembled |
273965 |