|
Taxon Oid |
3300009850
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Sorghum rhizosphere soil microbial communities from California, USA |
| Genome Name Sample Name |
Sorghum rhizosphere soil microbial communities in Albany, CA (condition:control)- sample C |
| Sequencing Center |
QB3 Vincent J. Coates Genomics Sequencing Laboratory |
| Img Genome Id |
3300009850 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Sorghum rhizosphere soil microbial communities from California, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.11.3 |
| Img Submission Id |
89758 |
|
Gold Analysis Project Id
|
Ga0130085
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0148682
|
|
Gold Study Id
|
Gs0118754
|
| Add Date |
06/29/2016 00:00:00 |
| Assembly Method |
Trinity |
| Comments |
released per PI |
| Has Coverage |
True |
| Public Release Date |
09/30/2019 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Ling Xu |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Ling Xu |
| Contact Email |
[email protected] |
| Contact Name |
Ling Xu |
| Is Published |
False |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Geographic Location |
California,USA |
| Habitat |
soil |
| Isolation |
Plant root |
| Latitude |
37.8872 |
| Longitude |
-122.304 |
| Sample Collection Date |
2016/3/4 |
| Host Name |
Sorghum |
| Genome Size Assembled |
52783870 |
| Gene Count Assembled |
131193 |