|
Taxon Oid |
3300006017
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizosphere and bulk soil microbial communities from Harvard Forest, USA |
| Genome Name Sample Name |
Rhizosphere microbial communities from Harvard Forest, USA - 6Rhizosphere_unsorted metaG |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300006017 |
| Img Submission Id |
71362 |
|
Gold Analysis Project Id
|
Ga0058708
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0104120
|
|
Gold Study Id
|
Gs0053064
|
| Add Date |
10/01/2015 00:00:00 |
| Assembly Method |
MEGAHIT v. 0.2.0 |
| Funding Agency |
E; D; O |
| Has Coverage |
True |
| Public Release Date |
05/27/2016 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Kristen M. DeAngelis PhD |
| Contact Email |
[email protected] |
| Contact Name |
Kristen M. DeAngelis PhD |
| Award Doi |
10.46936/10.25585/60000618 |
| Funding Program |
CSP |
| Funding Year |
2012 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA365879 |
| Ncbi Biosample Accession |
SAMN06267583 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Geographic Location |
Harvard Forest, Massachusetts, USA |
| Habitat |
rhizosphere |
| Isolation |
rhizosphere |
| Isolation Country |
8855 |
| Latitude |
42.5502 |
| Longitude |
-72.1737 |
| Sample Collection Date |
2013/9/1 |
| Host Name |
Brachypodium |
| Genome Size Assembled |
28678267 |
| Gene Count Assembled |
120818 |