F411785

General Info

Members Datasets Scaffolds Average Seq Length
334 301 136 342

Family's Representative Sequence

Representative Sequence 3300009765|Ga0123341_1026522|Ga0123341_10265224
Length 353
Sequence MRFDRSLELLLVHCQGELGHVLVSGAPEIPGATMLHKMNHINTVDDSLRRFVTFEPRANVAMSVNLLVAPTRPDADAGFIVLQADRAHPMSGSNCICVVTALLESGRVPMQEPETTVRLDTPAGLIVARARCKNGRCVSVSLDNVPSFAELLDHEIDTPAWGRIKVDIAFGGVYYALVDVAEVGLTIEPANARELAEAGIGLKRHLAEQVKVAHPTLPGVDEIAYVMFRDQELDGVVRTCTTLQPGRVDRSPCGTGSSANLATLYARGLVAVGDTRTSRSIIGGEFLAEAIGETEIGGRKAILPRITGRGYVYGRSELRFTEDDPFSGGFALSDTWGPQVGLLKGGTRHGQAA

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
3 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
4 2509276033 Rhizobium leguminosarum bv. trifolii WSM2012 Isolate Nodule
5 2510461076 Rhizobium leguminosarum bv. trifolii TA1 Isolate Nodule
6 2511231022 Pseudomonas sp. GM79 Isolate Nodule
7 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
8 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
9 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
10 2513237086 Sinorhizobium meliloti MVII-I Isolate Nodule
11 2513237093 Rhizobium leguminosarum bv. phaseoli FA23 Isolate Nodule
12 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
13 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
14 2513237162 Rhizobium ruizarguesonis GB30 Isolate Nodule
15 2513237166 Paraburkholderia azotifigens UYPR1.413 Isolate Nodule
16 2516143018 Ensifer sp. BR816 Isolate Nodule
17 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
18 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
19 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
20 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
21 2551306087 Sinorhizobium meliloti A0643DD Isolate Nodule
22 2551306090 Sinorhizobium meliloti A0641M Isolate Nodule
23 2551306092 Sinorhizobium meliloti AK75 Isolate Nodule
24 2551306093 Sinorhizobium meliloti C0438LL Isolate Nodule
25 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
26 2585427528 Rhizobium leguminosarum CF307 Isolate Rhizosphere
27 2585427593 Rhizobium tropici CF286 Isolate Rhizosphere
28 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
29 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
30 2615840624 Rhizobium aethiopicum HBR26 Isolate Nodule
31 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
32 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
33 2643221582 Rhizobium sp. Root651 Isolate Unclassified
34 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
35 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
36 2643221723 Ensifer sp. Root278 Isolate Unclassified
37 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
38 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
39 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
40 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
41 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
42 2721755823 Rhizobium phaseoli sv. phaseoli R630 Isolate Nodule
43 2738541333 Rhizobium sophoriradicis CCBAU 03470 Isolate Unclassified
44 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
45 2773857670 Pseudomonas sp. 478 Isolate Unclassified
46 2773857925 Microvirga vignae BR3299 Isolate Unclassified
47 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
48 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
49 2784132072 Pseudomonas sp. 460 Isolate Unclassified
50 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
51 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
52 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
53 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
54 2791355256 Rhizobium sp. M10 Isolate Nodule
55 2791355259 Rhizobium hidalgonense FH14 Isolate Nodule
56 2791355261 Rhizobium sp. J15 Isolate Nodule
57 2791355262 Rhizobium sp. M1 Isolate Nodule
58 2791355265 Rhizobium sp. H4 Isolate Nodule
59 2791355266 Rhizobium sp. L43 Isolate Nodule
60 2791355267 Rhizobium sp. L18 Isolate Nodule
61 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
62 2802429633 Rhizobium anhuiense J3 Isolate Nodule
63 2802429634 Rhizobium anhuiense S10 Isolate Nodule
64 2802429635 Rhizobium anhuiense Y27 Isolate Nodule
65 2802429636 Rhizobium anhuiense JX3 Isolate Nodule
66 2802429637 Rhizobium anhuiense C15 Isolate Nodule
67 2838022645 Rhizobium aethiopicum SEMIA 4074 Isolate Nodule
68 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
69 2838048938 Rhizobium pisi 27/80 Isolate Nodule
70 2838061910 Rhizobium phaseoli L15 Isolate Nodule
71 2838068647 Rhizobium esperanzae VC28 Isolate Nodule
72 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
73 2841864319 Rhizobium leguminosarum SEMIA 4052 Isolate Nodule
74 2842198810 Rhizobium aethiopicum SEMIA 470 Isolate Nodule
75 2842205361 Rhizobium etli SEMIA 471 Isolate Nodule
76 2842264693 Rhizobium phaseoli SEMIA 487 Isolate Nodule
77 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
78 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
79 2842311132 Rhizobium phaseoli SEMIA 4002 Isolate Nodule
80 2842341865 Rhizobium leguminosarum SEMIA 4011 Isolate Nodule
81 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
82 2842363717 Rhizobium leguminosarum SEMIA 4016 Isolate Nodule
83 2842422224 Rhizobium esperanzae SEMIA 4042 Isolate Nodule
84 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
85 2842434925 Rhizobium esperanzae SEMIA 4051 Isolate Nodule
86 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
87 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
88 2842462802 Rhizobium phaseoli SEMIA 4057 Isolate Nodule
89 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
90 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
91 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
92 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
93 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
94 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
95 2855825444 Sinorhizobium meliloti CXM1-105 Isolate Nodule
96 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
97 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
98 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
99 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
100 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
101 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
102 2916007675 Sinorhizobium meliloti USDA1289 Isolate Nodule
103 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
104 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
105 2916068649 Sinorhizobium meliloti USDA1220 Isolate Nodule
106 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
107 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
108 2921289301 Sinorhizobium meliloti USDA1730 Isolate Nodule
109 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
110 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
111 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
112 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
113 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
114 2924186466 Sinorhizobium meliloti USDA1389 Isolate Nodule
115 2924214083 Sinorhizobium meliloti USDA1702 Isolate Nodule
116 2924221636 Sinorhizobium meliloti USDA1416 Isolate Nodule
117 2924228884 Sinorhizobium meliloti USDA1581 Isolate Nodule
118 2928157003 Burkholderia ambifaria 566 Isolate Unclassified
119 2933599457 Rhizobium phaseoli M3 Isolate Nodule
120 2936375103 Rhizobium changzhiense WYCCWR 11317 Isolate Nodule
121 2936381700 Rhizobium chutanense C16 Isolate Unclassified
122 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
123 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
124 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
125 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
126 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
127 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
128 2957422303 Sinorhizobium meliloti USDA1497 Isolate Nodule
129 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
130 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
131 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
132 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
133 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
134 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
135 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
136 2960624210 Sinorhizobium meliloti USDA1415 Isolate Nodule
137 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
138 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
139 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
140 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
141 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
142 2964649959 Sinorhizobium meliloti USDA1591 Isolate Nodule
143 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
144 2964678106 Sinorhizobium meliloti USDA1210 Isolate Nodule
145 2964719344 Sinorhizobium meliloti USDA1456 Isolate Nodule
146 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
147 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
148 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
149 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
150 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
151 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
152 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
153 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
154 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
155 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
156 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
157 2970054988 Sinorhizobium meliloti USDA1031 Isolate Nodule
158 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
159 2970088815 Sinorhizobium meliloti USDA1819 Isolate Nodule
160 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
161 2970116247 Sinorhizobium meliloti USDA1566 Isolate Nodule
162 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
163 2970136068 Sinorhizobium meliloti USDA1699 Isolate Nodule
164 2970149975 Sinorhizobium meliloti USDA1215 Isolate Nodule
165 2970164137 Sinorhizobium meliloti USDA1018 Isolate Nodule
166 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
167 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
168 2970191845 Sinorhizobium meliloti USDA1187 Isolate Nodule
169 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
170 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
171 2977572785 Sinorhizobium meliloti USDA1767 Isolate Nodule
172 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
173 2981990288 Burkholderia sp. PvR073 Isolate Rhizosphere
174 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
175 3007419365 Pseudomonas vanderleydeniana RW8P3 Isolate Unclassified
176 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
177 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
178 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
179 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
180 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
181 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
182 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
183 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
184 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
185 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
186 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
187 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
188 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
189 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
190 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
191 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
192 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
193 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
194 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
195 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
196 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
197 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
198 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
199 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
200 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
201 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
202 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
203 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
204 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
205 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
206 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
207 3300009763 Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix Metagenome Nodule
208 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
209 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
210 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
211 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
212 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
213 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
214 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
215 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
216 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
217 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
218 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
219 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
220 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
221 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
222 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
223 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
224 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
225 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
226 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
227 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
228 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
229 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
230 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
231 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
232 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
233 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
234 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
235 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
236 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
237 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
238 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
239 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
240 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
241 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
242 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
243 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
244 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
245 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
246 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
247 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
248 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
249 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
250 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
251 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
252 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
253 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
254 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
255 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
256 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
257 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
258 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
259 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
260 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
261 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
262 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
263 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
264 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
265 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
266 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
267 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
268 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
269 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
270 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
271 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
272 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
273 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
274 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
275 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
276 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
277 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
278 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
279 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
280 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
281 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
282 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
283 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
284 8005258706 Rhizobium sp. R693 Isolate Nodule
285 8005376324 Rhizobium changzhiense WYCCWR 11279 Isolate Nodule
286 8005382845 Rhizobium sp. R634 Isolate Nodule
287 8005395548 Rhizobium sp. R339 Isolate Nodule
288 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
289 8005556819 Rhizobium sp. WYCCWR 11128 Isolate Nodule
290 8005563573 Rhizobium sp. WYCCWR 11152 Isolate Nodule
291 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule
292 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
293 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
294 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
295 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
296 8020938398 Burkholderia sp. BE12 Isolate Rhizosphere
297 8020953355 Burkholderia sp. BE24 Isolate Rhizosphere
298 8039098773 Burkholderia multivorans MSMB612WGS Isolate Unclassified
299 8056375014 Rhizobium redzepovicii 18T Isolate Nodule
300 8057132660 Paracoccus rhizosphaerae LMG 21293 Isolate Rhizosphere
301 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 40.72
Metatranscriptomes 0
Isolates 59.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.46
Nodule 49.7
Rhizoplane 0.3
Rhizosphere 20.06
Stem 0
Stem Tuber 0
Unclassified 10.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1001837 3300002739 Bacteria 3600
2 JGI25159J45721_1000080 3300002987 Bacteria 46567
3 JGI25165J46597_1000276 3300003214 Bacteria 66076
4 JGI25160J50197_1000160 3300003354 Bacteria 57733
5 JGI25160J50197_1005505 3300003354 Bacteria 5260
6 Ga0055526_1000913 3300003771 Bacteria 21962
7 Ga0055526_1001250 3300003771 Bacteria 18238
8 Ga0055524_1001595 3300003775 Bacteria 12719
9 Ga0055528_1000496 3300003790 Bacteria 31066
10 Ga0055540_1000077 3300003792 Bacteria 114283
11 Ga0055540_1000095 3300003792 Bacteria 97555
12 Ga0055531_10001938 3300003794 Bacteria 14455
13 Ga0058692_1000056 3300003856 Bacteria 105284
14 Ga0055543_1000410 3300004625 Bacteria 27002
15 Ga0055543_1000625 3300004625 Bacteria 19011
16 Ga0065165_1000534 3300005262 Bacteria 57771
17 Ga0065165_1023252 3300005262 Bacteria 2105
18 Ga0065165_1027002 3300005262 Bacteria 1878
19 Ga0070658_10040644 3300005327 Bacteria 3752
20 Ga0070660_100000020 3300005339 Bacteria 98286
21 Ga0070669_100006542 3300005353 Bacteria 8387
22 Ga0070674_100004537 3300005356 Bacteria 7931
23 Ga0070659_100000047 3300005366 Bacteria 98286
24 Ga0068861_100051638 3300005719 Bacteria 3122
25 Ga0068862_100015808 3300005844 Bacteria 6270
26 Ga0075365_10078122 3300006038 Bacteria 2237
27 Ga0075362_10000763 3300006177 Bacteria 9576
28 Ga0075367_10023659 3300006178 Bacteria 3459
29 Ga0075369_10038471 3300006186 Bacteria 2040
30 Ga0075366_10029263 3300006195 Bacteria 3236
31 Ga0075366_10067476 3300006195 Bacteria 2129
32 Ga0075370_10008077 3300006353 Bacteria 5399
33 Ga0075428_100051198 3300006844 Bacteria 4528
34 Ga0068865_100050150 3300006881 Bacteria 2882
35 Ga0079104_1001104 3300006946 Bacteria 19946
36 Ga0111539_10000067 3300009094 Bacteria 105394
37 Ga0114129_10184760 3300009147 Bacteria 2834
38 Ga0105249_10045088 3300009553 Bacteria 4010
39 Ga0123340_1023087 3300009763 Bacteria 4578
40 Ga0123341_1000082 3300009765 Bacteria 40371
41 Ga0123341_1026522 3300009765 Bacteria 4587
42 Ga0105239_10005879 3300010375 Bacteria 14296
43 Ga0157369_10176075 3300013105 Bacteria 2252
44 Ga0157380_10025451 3300014326 Bacteria 4487
45 Ga0182008_10000970 3300014497 Bacteria 19917
46 Ga0182006_1002548 3300015261 Bacteria 9886
47 Ga0182006_1026797 3300015261 Bacteria 2357
48 Ga0182007_10000152 3300015262 Bacteria 46887
49 Ga0182005_1000181 3300015265 Bacteria 43402
50 Ga0182005_1027316 3300015265 Bacteria 1556
51 Ga0209436_100101 3300025208 Bacteria 42360
52 Ga0209437_100023 3300025233 Bacteria 614195
53 Ga0207425_1016431 3300025245 Bacteria 1641
54 Ga0209148_1000913 3300025254 Bacteria 19928
55 Ga0209129_1000917 3300025258 Bacteria 18018
56 Ga0209233_1000062 3300025261 Bacteria 399685
57 Ga0209455_1001650 3300025272 Bacteria 9682
58 Ga0209673_1000294 3300025273 Bacteria 93050
59 Ga0209673_1000921 3300025273 Bacteria 37249
60 Ga0209130_1000309 3300025284 Bacteria 57785
61 Ga0209675_1029454 3300025291 Bacteria 1322
62 Ga0209676_1002316 3300025292 Bacteria 13827
63 Ga0209025_1000260 3300025294 Bacteria 124240
64 Ga0209025_1001018 3300025294 Bacteria 41249
65 Ga0209025_1001911 3300025294 Bacteria 24216
66 Ga0209025_1014691 3300025294 Bacteria 4791
67 Ga0209564_1000341 3300025295 Bacteria 89262
68 Ga0209564_1001129 3300025295 Bacteria 31419
69 Ga0209758_1001982 3300025297 Bacteria 22133
70 Ga0209050_1009398 3300025298 Bacteria 5011
71 Ga0209050_1012525 3300025298 Bacteria 3879
72 Ga0209256_1000719 3300025299 Bacteria 43868
73 Ga0209256_1003376 3300025299 Bacteria 11297
74 Ga0207426_1000503 3300025302 Bacteria 57785
75 Ga0207426_1001199 3300025302 Bacteria 23041
76 Ga0209051_1000027 3300025303 Bacteria 412172
77 Ga0209051_1000534 3300025303 Bacteria 46804
78 Ga0209051_1003762 3300025303 Bacteria 9734
79 Ga0209257_1000599 3300025304 Bacteria 59865
80 Ga0209257_1015356 3300025304 Bacteria 3195
81 Ga0209257_1036624 3300025304 Bacteria 1505
82 Ga0207696_1022417 3300025711 Bacteria 2007
83 Ga0207705_10139642 3300025909 Bacteria 1808
84 Ga0207657_10000390 3300025919 Bacteria 46278
85 Ga0207690_10000037 3300025932 Bacteria 142658
86 Ga0207704_10032832 3300025938 Bacteria 2943
87 Ga0207675_100042871 3300026118 Bacteria 4225
88 Ga0209281_1000778 3300027111 Bacteria 30318
89 Ga0209371_1000121 3300027312 Bacteria 132565
90 Ga0209813_10016861 3300027866 Bacteria 1998
91 Ga0207428_10000235 3300027907 Bacteria 75923
92 Ga0268256_1000107 3300030500 Bacteria 121028
93 Ga0395905_0001801 3300037471 Bacteria 24828
94 Ga0439466_0027396 3300041411 Bacteria 1974
95 Ga0439465_0009789 3300041413 Bacteria 3019
96 Ga0451851_0665109 3300041507 Bacteria 1287
97 Ga0451855_0456754 3300041511 Bacteria 1294
98 Ga0451853_2244066 3300041512 Bacteria 2135
99 Ga0466957_0000424 3300044842 Bacteria 20789
100 Ga0495584_0003828 3300046491 Bacteria 8179
101 Ga0495585_0022157 3300046492 Bacteria 3647
102 Ga0495585_0028909 3300046492 Bacteria 3159
103 Ga0495583_0002791 3300046506 Bacteria 14384
104 Ga0495610_0008138 3300046512 Bacteria 6848
105 Ga0495610_0013890 3300046512 Bacteria 4759
106 Ga0495620_0041041 3300046515 Bacteria 2032
107 Ga0495620_0059711 3300046515 Bacteria 1593
108 Ga0495637_0002338 3300046520 Bacteria 10499
109 Ga0495609_0000961 3300046538 Bacteria 20682
110 Ga0495633_0071836 3300046558 Bacteria 1614
111 Ga0495625_0003332 3300046660 Bacteria 16170
112 Ga0495625_0005428 3300046660 Bacteria 11638
113 Ga0495588_0000638 3300046674 Bacteria 16289
114 Ga0495588_0141753 3300046674 Bacteria 1270
115 Ga0495687_031101 3300047443 Bacteria 2451
116 Ga0495681_0007910 3300047470 Bacteria 6721
117 Ga0495686_0078276 3300047472 Bacteria 2024
118 Ga0496113_0057331 3300048916 Bacteria 2927
119 Ga0496116_0065900 3300048919 Bacteria 2320
120 Ga0496117_0218466 3300048920 Bacteria 1063
121 Ga0496124_0006567 3300048927 Bacteria 12638
122 Ga0496125_0115093 3300048928 Bacteria 1935
123 Ga0495678_062639 3300049459 Bacteria 1392
124 Ga0501034_0193476 3300049571 Bacteria 1995
125 Ga0501080_0139953 3300049742 Bacteria 2238
126 Ga0501045_0104851 3300049824 Bacteria 2095
127 nmdc:mga03683_60618_c1 3300050489 Bacteria 1598
128 nmdc:mga0yw44_38592_c1 3300050492 Bacteria 2827
129 nmdc:mga0k408_21553_c1 3300050493 Bacteria 3620
130 nmdc:mga0k408_89581_c1 3300050493 Bacteria 1807
131 nmdc:mga06z11_4618_c1 3300050494 Bacteria 5432
132 nmdc:mga04h51_19044_c1 3300050495 Bacteria 2030
133 nmdc:mga08y16_175_c1 3300050511 Bacteria 56460
134 nmdc:mga0sz30_74007_c1 3300050516 Bacteria 1469
135 Ga0500594_0027624 3300053118 Bacteria 1471
136 Ga0500636_0000095 3300053177 Bacteria 44876

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048920 Ga0496117_0218466 Ga0496117_0218466_187_1050 283
2 iso_pu_bacteria 8020953355 8020953693 305
3 3300046492 Ga0495585_0022157 Ga0495585_0022157_2388_3323 311
4 3300050493 nmdc:mga0k408_89581_c1 nmdc:mga0k408_89581_c1_23_958 311
5 iso_pu_bacteria 2513237159 2514000509 319
6 iso_pu_bacteria 2842521101 2842523493 319
7 iso_pu_bacteria 2511231022 2511365556 336
8 iso_pu_bacteria 2773857670 2774120044 336
9 iso_pu_bacteria 2784132072 2784312025 336
10 iso_pu_bacteria 3007419365 3007423908 338
11 iso_pu_bacteria 8020938398 8020943677 338
12 iso_pu_bacteria 2643221723 2644672371 339
13 iso_pu_bacteria 2855825444 2855830285 339
14 iso_pu_bacteria 2855839649 2855845937 339
15 iso_pu_bacteria 2891373044 2891377992 339
16 iso_pu_bacteria 2915993759 2915995866 339
17 iso_pu_bacteria 2916007675 2916012829 339
18 iso_pu_bacteria 2916014648 2916017684 339
19 iso_pu_bacteria 2916035215 2916038735 339
20 iso_pu_bacteria 2916068649 2916071672 339
21 iso_pu_bacteria 2921201388 2921206827 339
22 iso_pu_bacteria 2921289301 2921293906 339
23 iso_pu_bacteria 2921296804 2921303157 339
24 iso_pu_bacteria 2924150972 2924155607 339
25 iso_pu_bacteria 2924158325 2924162931 339
26 iso_pu_bacteria 2924165586 2924169612 339
27 iso_pu_bacteria 2924186466 2924190053 339
28 iso_pu_bacteria 2924214083 2924220387 339
29 iso_pu_bacteria 2924221636 2924224562 339
30 iso_pu_bacteria 2924228884 2924233309 339
31 iso_pu_bacteria 2937002841 2937006556 339
32 iso_pu_bacteria 2937056579 2937061247 339
33 iso_pu_bacteria 2937091812 2937096257 339
34 iso_pu_bacteria 2937098957 2937103875 339
35 iso_pu_bacteria 2957471148 2957474975 339
36 iso_pu_bacteria 2957498199 2957503156 339
37 iso_pu_bacteria 2960652885 2960655575 339
38 iso_pu_bacteria 2964607997 2964612644 339
39 iso_pu_bacteria 2964649959 2964654222 339
40 iso_pu_bacteria 2964656573 2964661356 339
41 iso_pu_bacteria 2964678106 2964683982 339
42 iso_pu_bacteria 2967678726 2967683580 339
43 iso_pu_bacteria 2967693043 2967695854 339
44 iso_pu_bacteria 2967714385 2967719140 339
45 iso_pu_bacteria 2967721400 2967725618 339
46 iso_pu_bacteria 2970019648 2970026303 339
47 iso_pu_bacteria 2970047711 2970047751 339
48 iso_pu_bacteria 2970054988 2970058124 339
49 iso_pu_bacteria 2970061556 2970066060 339
50 iso_pu_bacteria 2970088815 2970092968 339
51 iso_pu_bacteria 2970109326 2970114862 339
52 iso_pu_bacteria 2970129317 2970132348 339
53 iso_pu_bacteria 2970184632 2970189100 339
54 iso_pu_bacteria 2977537788 2977542128 339
55 iso_pu_bacteria 2977551784 2977556604 339
56 iso_pu_bacteria 2977572785 2977575831 339
57 iso_pu_bacteria 2989349275 2989350264 339
58 iso_pu_bacteria 8057132660 8057135695 339
59 3300014497 Ga0182008_10000970 Ga0182008_100009703 340
60 3300015261 Ga0182006_1002548 Ga0182006_10025483 340
61 3300015262 Ga0182007_10000152 Ga0182007_1000015239 340
62 3300015265 Ga0182005_1000181 Ga0182005_10001812 340
63 3300046491 Ga0495584_0003828 Ga0495584_0003828_2846_3868 340
64 iso_pu_bacteria 2508501122 2509111152 340
65 iso_pu_bacteria 2508501122 2509111855 340
66 iso_pu_bacteria 2509276021 2509391282 340
67 iso_pu_bacteria 2509276033 2509445467 340
68 iso_pu_bacteria 2510461076 2510892563 340
69 iso_pu_bacteria 2512047086 2512528871 340
70 iso_pu_bacteria 2512047086 2512531422 340
71 iso_pu_bacteria 2513237084 2513568321 340
72 iso_pu_bacteria 2513237093 2513634773 340
73 iso_pu_bacteria 2513237162 2514018564 340
74 iso_pu_bacteria 2513237166 2514050506 340
75 iso_pu_bacteria 2524023209 2524461674 340
76 iso_pu_bacteria 2582581316 2585334492 340
77 iso_pu_bacteria 2585427528 2585541721 340
78 iso_pu_bacteria 2585427593 2585840060 340
79 iso_pu_bacteria 2585427608 2585902481 340
80 iso_pu_bacteria 2615840624 2616294929 340
81 iso_pu_bacteria 2615840698 2616555936 340
82 iso_pu_bacteria 2617270742 2617384091 340
83 iso_pu_bacteria 2643221582 2643918421 340
84 iso_pu_bacteria 2643221634 2644194476 340
85 iso_pu_bacteria 2643221636 2644200479 340
86 iso_pu_bacteria 2718218233 2720617734 340
87 iso_pu_bacteria 2718218235 2720628876 340
88 iso_pu_bacteria 2718218269 2720772825 340
89 iso_pu_bacteria 2721755819 2724092854 340
90 iso_pu_bacteria 2721755823 2724113242 340
91 iso_pu_bacteria 2738541333 2739036335 340
92 iso_pu_bacteria 2751185821 2753461421 340
93 iso_pu_bacteria 2775506902 2776266894 340
94 iso_pu_bacteria 2775506904 2776283138 340
95 iso_pu_bacteria 2791355094 2792642179 340
96 iso_pu_bacteria 2791355256 2793297310 340
97 iso_pu_bacteria 2791355259 2793317416 340
98 iso_pu_bacteria 2791355261 2793327989 340
99 iso_pu_bacteria 2791355262 2793334186 340
100 iso_pu_bacteria 2791355265 2793354515 340
101 iso_pu_bacteria 2791355266 2793362358 340
102 iso_pu_bacteria 2791355267 2793365165 340
103 iso_pu_bacteria 2802429633 2806046438 340
104 iso_pu_bacteria 2802429634 2806053026 340
105 iso_pu_bacteria 2802429635 2806059766 340
106 iso_pu_bacteria 2802429636 2806068496 340
107 iso_pu_bacteria 2802429637 2806074918 340
108 iso_pu_bacteria 2838022645 2838027430 340
109 iso_pu_bacteria 2838035591 2838036273 340
110 iso_pu_bacteria 2838048938 2838050231 340
111 iso_pu_bacteria 2838061910 2838062275 340
112 iso_pu_bacteria 2838068647 2838069352 340
113 iso_pu_bacteria 2838074704 2838079884 340
114 iso_pu_bacteria 2841864319 2841868593 340
115 iso_pu_bacteria 2842198810 2842202970 340
116 iso_pu_bacteria 2842205361 2842209164 340
117 iso_pu_bacteria 2842264693 2842264721 340
118 iso_pu_bacteria 2842278818 2842282790 340
119 iso_pu_bacteria 2842298080 2842303051 340
120 iso_pu_bacteria 2842311132 2842312886 340
121 iso_pu_bacteria 2842341865 2842342542 340
122 iso_pu_bacteria 2842357229 2842361541 340
123 iso_pu_bacteria 2842363717 2842365685 340
124 iso_pu_bacteria 2842422224 2842422543 340
125 iso_pu_bacteria 2842428310 2842429225 340
126 iso_pu_bacteria 2842434925 2842435839 340
127 iso_pu_bacteria 2842441272 2842441300 340
128 iso_pu_bacteria 2842447887 2842449705 340
129 iso_pu_bacteria 2842462802 2842463646 340
130 iso_pu_bacteria 2842469257 2842470168 340
131 iso_pu_bacteria 2842509118 2842513554 340
132 iso_pu_bacteria 2852387548 2852392328 340
133 iso_pu_bacteria 2852387548 2852392842 340
134 iso_pu_bacteria 2913295892 2913298929 340
135 iso_pu_bacteria 2923556063 2923560450 340
136 iso_pu_bacteria 2928157003 2928161089 340
137 iso_pu_bacteria 2933599457 2933600014 340
138 iso_pu_bacteria 2936375103 2936375349 340
139 iso_pu_bacteria 2936381700 2936383188 340
140 iso_pu_bacteria 2981990288 2981991237 340
141 iso_pu_bacteria 8005258706 8005260595 340
142 iso_pu_bacteria 8005376324 8005380054 340
143 iso_pu_bacteria 8005382845 8005382991 340
144 iso_pu_bacteria 8005395548 8005398587 340
145 iso_pu_bacteria 8005430974 8005434385 340
146 iso_pu_bacteria 8005556819 8005563504 340
147 iso_pu_bacteria 8005563573 8005565283 340
148 iso_pu_bacteria 8005570704 8005572443 340
149 iso_pu_bacteria 8005619151 8005624335 340
150 iso_pu_bacteria 8005626139 8005629597 340
151 iso_pu_bacteria 8018127388 8018129218 340
152 iso_pu_bacteria 8018163183 8018168684 340
153 iso_pu_bacteria 8039098773 8039103040 340
154 iso_pu_bacteria 8056375014 8056377666 340
155 iso_pu_bacteria 8057575449 8057580166 340
156 3300003856 Ga0058692_1000056 Ga0058692_100005660 341
157 3300005353 Ga0070669_100006542 Ga0070669_1000065426 341
158 3300005356 Ga0070674_100004537 Ga0070674_1000045376 341
159 3300005719 Ga0068861_100051638 Ga0068861_1000516384 341
160 3300005844 Ga0068862_100015808 Ga0068862_1000158087 341
161 3300006844 Ga0075428_100051198 Ga0075428_1000511983 341
162 3300006881 Ga0068865_100050150 Ga0068865_1000501504 341
163 3300009094 Ga0111539_10000067 Ga0111539_1000006769 341
164 3300009147 Ga0114129_10184760 Ga0114129_101847604 341
165 3300009553 Ga0105249_10045088 Ga0105249_100450882 341
166 3300014326 Ga0157380_10025451 Ga0157380_100254512 341
167 3300025938 Ga0207704_10032832 Ga0207704_100328322 341
168 3300026118 Ga0207675_100042871 Ga0207675_1000428712 341
169 3300027312 Ga0209371_1000121 Ga0209371_100012138 341
170 3300027907 Ga0207428_10000235 Ga0207428_1000023536 341
171 3300030500 Ga0268256_1000107 Ga0268256_100010780 341
172 3300050511 nmdc:mga08y16_175_c1 nmdc:mga08y16_175_c1_40371_41399 341
173 iso_pu_bacteria 2508501050 2508731929 341
174 iso_pu_bacteria 2516143018 2516207084 341
175 iso_pu_bacteria 2773857925 2774872465 341
176 iso_pu_bacteria 2791355091 2792624166 341
177 iso_pu_bacteria 2791355092 2792629554 341
178 iso_pu_bacteria 2882456835 2882460186 341
179 iso_pu_bacteria 2913295892 2913301683 341
180 3300003771 Ga0055526_1001250 Ga0055526_10012508 343
181 3300003794 Ga0055531_10001938 Ga0055531_100019382 343
182 3300006946 Ga0079104_1001104 Ga0079104_100110410 343
183 3300025292 Ga0209676_1002316 Ga0209676_100231615 343
184 3300025294 Ga0209025_1001911 Ga0209025_10019114 343
185 3300025295 Ga0209564_1000341 Ga0209564_100034115 343
186 3300025298 Ga0209050_1009398 Ga0209050_10093982 343
187 3300025299 Ga0209256_1003376 Ga0209256_10033766 343
188 3300025304 Ga0209257_1000599 Ga0209257_100059953 343
189 3300025304 Ga0209257_1036624 Ga0209257_10366242 343
190 3300027111 Ga0209281_1000778 Ga0209281_100077824 343
191 3300049571 Ga0501034_0193476 Ga0501034_0193476_355_1386 343
192 iso_pu_bacteria 2511231052 2511499495 343
193 iso_pu_bacteria 2513237086 2513586231 343
194 iso_pu_bacteria 2551306084 2551676112 343
195 iso_pu_bacteria 2551306085 2551683921 343
196 iso_pu_bacteria 2551306086 2551693261 343
197 iso_pu_bacteria 2551306087 2551701926 343
198 iso_pu_bacteria 2551306090 2551721485 343
199 iso_pu_bacteria 2551306092 2551732167 343
200 iso_pu_bacteria 2551306093 2551739676 343
201 iso_pu_bacteria 2921237296 2921238495 343
202 iso_pu_bacteria 2937049772 2937055858 343
203 iso_pu_bacteria 2937106411 2937110455 343
204 iso_pu_bacteria 2957422303 2957428789 343
205 iso_pu_bacteria 2957430029 2957436228 343
206 iso_pu_bacteria 2957457609 2957458294 343
207 iso_pu_bacteria 2957484790 2957485183 343
208 iso_pu_bacteria 2957505466 2957509532 343
209 iso_pu_bacteria 2960603979 2960608203 343
210 iso_pu_bacteria 2960624210 2960627505 343
211 iso_pu_bacteria 2960637947 2960644965 343
212 iso_pu_bacteria 2960645483 2960649321 343
213 iso_pu_bacteria 2964628898 2964633446 343
214 iso_pu_bacteria 2964719344 2964726379 343
215 iso_pu_bacteria 2967664464 2967670905 343
216 iso_pu_bacteria 2967706974 2967708750 343
217 iso_pu_bacteria 2967735183 2967739094 343
218 iso_pu_bacteria 2967762386 2967763044 343
219 iso_pu_bacteria 2970040964 2970043103 343
220 iso_pu_bacteria 2970116247 2970117486 343
221 iso_pu_bacteria 2970136068 2970139475 343
222 iso_pu_bacteria 2970149975 2970150939 343
223 iso_pu_bacteria 2970164137 2970168030 343
224 iso_pu_bacteria 2970170962 2970174601 343
225 iso_pu_bacteria 2970191845 2970195508 343
226 iso_pu_bacteria 2977579622 2977581911 343
227 3300002739 JGI25158J39367_1001837 JGI25158J39367_10018372 344
228 3300002987 JGI25159J45721_1000080 JGI25159J45721_100008036 344
229 3300003214 JGI25165J46597_1000276 JGI25165J46597_100027616 344
230 3300003354 JGI25160J50197_1000160 JGI25160J50197_100016016 344
231 3300003354 JGI25160J50197_1005505 JGI25160J50197_10055054 344
232 3300003771 Ga0055526_1000913 Ga0055526_100091316 344
233 3300003775 Ga0055524_1001595 Ga0055524_100159511 344
234 3300003790 Ga0055528_1000496 Ga0055528_100049619 344
235 3300003792 Ga0055540_1000077 Ga0055540_100007745 344
236 3300003792 Ga0055540_1000095 Ga0055540_100009587 344
237 3300004625 Ga0055543_1000410 Ga0055543_100041023 344
238 3300004625 Ga0055543_1000625 Ga0055543_100062513 344
239 3300005262 Ga0065165_1000534 Ga0065165_100053417 344
240 3300005262 Ga0065165_1023252 Ga0065165_10232522 344
241 3300005262 Ga0065165_1027002 Ga0065165_10270022 344
242 3300005327 Ga0070658_10040644 Ga0070658_100406443 344
243 3300005339 Ga0070660_100000020 Ga0070660_10000002043 344
244 3300005366 Ga0070659_100000047 Ga0070659_10000004743 344
245 3300006038 Ga0075365_10078122 Ga0075365_100781222 344
246 3300006177 Ga0075362_10000763 Ga0075362_100007632 344
247 3300006178 Ga0075367_10023659 Ga0075367_100236593 344
248 3300006186 Ga0075369_10038471 Ga0075369_100384712 344
249 3300006195 Ga0075366_10029263 Ga0075366_100292634 344
250 3300006195 Ga0075366_10067476 Ga0075366_100674762 344
251 3300006353 Ga0075370_10008077 Ga0075370_100080772 344
252 3300009763 Ga0123340_1023087 Ga0123340_10230872 344
253 3300009765 Ga0123341_1000082 Ga0123341_100008210 344
254 3300009765 Ga0123341_1026522 Ga0123341_10265224 344
255 3300010375 Ga0105239_10005879 Ga0105239_1000587910 344
256 3300013105 Ga0157369_10176075 Ga0157369_101760752 344
257 3300015261 Ga0182006_1026797 Ga0182006_10267972 344
258 3300015265 Ga0182005_1027316 Ga0182005_10273162 344
259 3300025208 Ga0209436_100101 Ga0209436_10010117 344
260 3300025233 Ga0209437_100023 Ga0209437_100023458 344
261 3300025245 Ga0207425_1016431 Ga0207425_10164312 344
262 3300025254 Ga0209148_1000913 Ga0209148_10009132 344
263 3300025258 Ga0209129_1000917 Ga0209129_10009176 344
264 3300025261 Ga0209233_1000062 Ga0209233_100006217 344
265 3300025272 Ga0209455_1001650 Ga0209455_10016502 344
266 3300025273 Ga0209673_1000294 Ga0209673_100029412 344
267 3300025273 Ga0209673_1000921 Ga0209673_10009213 344
268 3300025284 Ga0209130_1000309 Ga0209130_100030917 344
269 3300025291 Ga0209675_1029454 Ga0209675_10294541 344
270 3300025294 Ga0209025_1000260 Ga0209025_1000260112 344
271 3300025294 Ga0209025_1001018 Ga0209025_100101811 344
272 3300025294 Ga0209025_1014691 Ga0209025_10146912 344
273 3300025295 Ga0209564_1001129 Ga0209564_100112926 344
274 3300025297 Ga0209758_1001982 Ga0209758_100198213 344
275 3300025298 Ga0209050_1012525 Ga0209050_10125253 344
276 3300025299 Ga0209256_1000719 Ga0209256_100071926 344
277 3300025302 Ga0207426_1000503 Ga0207426_100050317 344
278 3300025302 Ga0207426_1001199 Ga0207426_100119912 344
279 3300025303 Ga0209051_1000027 Ga0209051_1000027292 344
280 3300025303 Ga0209051_1000534 Ga0209051_100053436 344
281 3300025303 Ga0209051_1003762 Ga0209051_10037629 344
282 3300025304 Ga0209257_1015356 Ga0209257_10153564 344
283 3300025711 Ga0207696_1022417 Ga0207696_10224172 344
284 3300025909 Ga0207705_10139642 Ga0207705_101396422 344
285 3300025919 Ga0207657_10000390 Ga0207657_1000039043 344
286 3300025932 Ga0207690_10000037 Ga0207690_1000003762 344
287 3300027866 Ga0209813_10016861 Ga0209813_100168612 344
288 3300037471 Ga0395905_0001801 Ga0395905_0001801_11077_12111 344
289 3300041411 Ga0439466_0027396 Ga0439466_0027396_587_1621 344
290 3300041413 Ga0439465_0009789 Ga0439465_0009789_1945_2979 344
291 3300041507 Ga0451851_0665109 Ga0451851_0665109_148_1182 344
292 3300041511 Ga0451855_0456754 Ga0451855_0456754_165_1199 344
293 3300041512 Ga0451853_2244066 Ga0451853_2244066_586_1620 344
294 3300044842 Ga0466957_0000424 Ga0466957_0000424_2278_3324 344
295 3300046492 Ga0495585_0028909 Ga0495585_0028909_258_1292 344
296 3300046506 Ga0495583_0002791 Ga0495583_0002791_2433_3467 344
297 3300046512 Ga0495610_0008138 Ga0495610_0008138_1853_2887 344
298 3300046512 Ga0495610_0013890 Ga0495610_0013890_562_1596 344
299 3300046515 Ga0495620_0041041 Ga0495620_0041041_579_1613 344
300 3300046515 Ga0495620_0059711 Ga0495620_0059711_438_1472 344
301 3300046520 Ga0495637_0002338 Ga0495637_0002338_7147_8181 344
302 3300046538 Ga0495609_0000961 Ga0495609_0000961_4506_5540 344
303 3300046558 Ga0495633_0071836 Ga0495633_0071836_547_1581 344
304 3300046660 Ga0495625_0003332 Ga0495625_0003332_10658_11692 344
305 3300046660 Ga0495625_0005428 Ga0495625_0005428_2248_3282 344
306 3300046674 Ga0495588_0000638 Ga0495588_0000638_4317_5351 344
307 3300046674 Ga0495588_0141753 Ga0495588_0141753_87_1121 344
308 3300047443 Ga0495687_031101 Ga0495687_031101_74_1108 344
309 3300047470 Ga0495681_0007910 Ga0495681_0007910_1344_2378 344
310 3300047472 Ga0495686_0078276 Ga0495686_0078276_779_1813 344
311 3300048916 Ga0496113_0057331 Ga0496113_0057331_1508_2554 344
312 3300048919 Ga0496116_0065900 Ga0496116_0065900_903_1949 344
313 3300048927 Ga0496124_0006567 Ga0496124_0006567_746_1780 344
314 3300048928 Ga0496125_0115093 Ga0496125_0115093_20_1066 344
315 3300049459 Ga0495678_062639 Ga0495678_062639_293_1327 344
316 3300049742 Ga0501080_0139953 Ga0501080_0139953_772_1815 344
317 3300049824 Ga0501045_0104851 Ga0501045_0104851_1004_2038 344
318 3300050489 nmdc:mga03683_60618_c1 nmdc:mga03683_60618_c1_321_1355 344
319 3300050492 nmdc:mga0yw44_38592_c1 nmdc:mga0yw44_38592_c1_816_1850 344
320 3300050493 nmdc:mga0k408_21553_c1 nmdc:mga0k408_21553_c1_1880_2914 344
321 3300050494 nmdc:mga06z11_4618_c1 nmdc:mga06z11_4618_c1_1449_2483 344
322 3300050495 nmdc:mga04h51_19044_c1 nmdc:mga04h51_19044_c1_840_1874 344
323 3300050516 nmdc:mga0sz30_74007_c1 nmdc:mga0sz30_74007_c1_163_1197 344
324 3300053118 Ga0500594_0027624 Ga0500594_0027624_240_1274 344
325 3300053177 Ga0500636_0000095 Ga0500636_0000095_42263_43297 344
326 iso_pu_bacteria 2513237146 2513924106 344
327 iso_pu_bacteria 2599185170 2599416152 344
328 iso_pu_bacteria 2690316117 2692320046 344
329 iso_pu_bacteria 2791355082 2792580016 344
330 iso_pu_bacteria 2802429268 2804755949 344
331 iso_pu_bacteria 2838074704 2838076030 344
332 iso_pu_bacteria 2847417321 2847420566 344
333 iso_pu_bacteria 2848992105 2848995437 344
334 iso_pu_bacteria 2855872281 2855876412 344

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05544

Pro_racemase

Proline racemase

9

331

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
4q2h-assembly1.cif.gz_B crystal structure of probable proline racemase from agrobacterium radiobacter k84, target efi-506561, with bound carbonate 0.9751 7 342
4lb0-assembly1.cif.gz_B crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline 0.9709 1 344
4lb0-assembly1.cif.gz_B crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline 0.9681 1 344
4lb0-assembly1.cif.gz_A crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline 0.9669 1 341
4k7g-assembly1.cif.gz_B crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site 0.9615 5 336
ID Description Score Start End Superfamily
4q2hB02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9876 145 308 3.10.310.10
4q2hB02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9817 145 308 3.10.310.10
4q2hB01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9702 7 142 3.10.310.10
af_Q868H8_133_298_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9581 144 289 3.10.310.10
1tm0B01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9479 4 142 3.10.310.10
ID Description Score Start End GO Terms
AF-A0A3C1B8S2-F1-model_v4 Proline racemase 0.9809 63 226 GO:0047580
AF-A0A6A5KVP3-F1-model_v4 deleted 0.9789 16 326
AF-A0A2D7CAM3-F1-model_v4 Proline racemase 0.9784 1 337 GO:0047580
AF-A0A7W5QCB7-F1-model_v4 deleted 0.9779 1 342
AF-A0A1N7RKJ2-F1-model_v4 Proline racemase 0.9774 1 271 GO:0047580

Feature Viewer

pLDDT pTM Quality
88.49 0.88 High
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Predicted Structure (AlphaFold2)

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