F378478

General Info

Members Datasets Scaffolds Average Seq Length
272 150 72 326

Family's Representative Sequence

Representative Sequence 3300031967|Ga0315914_1006745|Ga0315914_100674517
Length 377
Sequence MRAFLHSPLIDGWRAASPMNVLIMFSTQKESIRLFAVPCVNGPMARASSKKPRDVAPIDPMPARVDPCLATLVDKPPIGPDWAYEVKWDGYRLALHIEPGRVRVLTRGGYDWTDRFPSIADDARRLAVKTAILDGEAVVLNDQGRSDFGMLQRALGRLPSAVEAGAIVFYAFDLLYLDSHDLRRLPLRERRRLLEPLVAGREGAVRLSEEVQADGDEFFRVACAHGLEGIIAKHVEKPYRSGRGDWWQKITCKRRDSFVVVGFEPSTVAGHLGRLLLAARKDGELVYVGGCGTGWSNELSRELRKLLEGMATKGPAVALRRKGAVFVEPVLVAEVEYRAWTDDWKLRHASFKGIREREDDATVCALLCNGSQGPAER

Samples

Sample ID Description Type Environment
1 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
2 2509276019 Ensifer aridi TW10 Isolate Nodule
3 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
4 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
5 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
6 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
7 2513237143 Sinorhizobium meliloti Mlalz-1 Isolate Nodule
8 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
9 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
10 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
11 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
12 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
13 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
14 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
15 2802428858 Sinorhizobium medicae M14-1 Isolate Nodule
16 2802428859 Sinorhizobium medicae SF3.41 Isolate Nodule
17 2802428860 Sinorhizobium medicae M19-1 Isolate Nodule
18 2802428861 Sinorhizobium medicae USDA1037 Isolate Nodule
19 2802428862 Sinorhizobium medicae M7-4 Isolate Nodule
20 2802429633 Rhizobium anhuiense J3 Isolate Nodule
21 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
22 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
23 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
24 2915986958 Sinorhizobium meliloti USDA1659 Isolate Nodule
25 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
26 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
27 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
28 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
29 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
30 2916041962 Sinorhizobium meliloti USDA1795 Isolate Nodule
31 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
32 2916068649 Sinorhizobium meliloti USDA1220 Isolate Nodule
33 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
34 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
35 2921244191 Sinorhizobium meliloti 2119 Isolate Nodule
36 2921250672 Sinorhizobium medicae USDA1169 Isolate Nodule
37 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
38 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
39 2924144063 Sinorhizobium meliloti USDA1022 Isolate Nodule
40 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
41 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
42 2924172951 Sinorhizobium meliloti USDA1626 Isolate Nodule
43 2924207177 Sinorhizobium meliloti USDA1589 Isolate Nodule
44 2924214083 Sinorhizobium meliloti USDA1702 Isolate Nodule
45 2924228884 Sinorhizobium meliloti USDA1581 Isolate Nodule
46 2936996657 Sinorhizobium meliloti USDA1025 Isolate Nodule
47 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
48 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
49 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
50 2937042894 Sinorhizobium meliloti USDA1687 Isolate Nodule
51 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
52 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
53 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
54 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
55 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
56 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
57 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
58 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
59 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
60 2937126314 Sinorhizobium meliloti USDA1612 Isolate Nodule
61 2957388812 Sinorhizobium meliloti USDA1195 Isolate Nodule
62 2957415311 Sinorhizobium meliloti USDA1724 Isolate Nodule
63 2957422303 Sinorhizobium meliloti USDA1497 Isolate Nodule
64 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
65 2957443900 Sinorhizobium meliloti USDA1734 Isolate Nodule
66 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
67 2957464669 Sinorhizobium meliloti USDA1520 Isolate Nodule
68 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
69 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
70 2957491536 Sinorhizobium meliloti USDA1804 Isolate Nodule
71 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
72 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
73 2960584000 Sinorhizobium meliloti USDA1530 Isolate Nodule
74 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
75 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
76 2960617483 Sinorhizobium meliloti USDA1719 Isolate Nodule
77 2960624210 Sinorhizobium meliloti USDA1415 Isolate Nodule
78 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
79 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
80 2960660292 Sinorhizobium meliloti USDA1883 Isolate Nodule
81 2960674078 Sinorhizobium meliloti USDA1666 Isolate Nodule
82 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
83 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
84 2964621998 Sinorhizobium meliloti USDA1235 Isolate Nodule
85 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
86 2964643177 Sinorhizobium meliloti USDA1760 Isolate Nodule
87 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
88 2964663802 Sinorhizobium meliloti USDA1688 Isolate Nodule
89 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
90 2964678106 Sinorhizobium meliloti USDA1210 Isolate Nodule
91 2964685014 Sinorhizobium meliloti USDA1232 Isolate Nodule
92 2964698721 Sinorhizobium meliloti USDA1656 Isolate Nodule
93 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
94 2964712639 Sinorhizobium meliloti USDA1616 Isolate Nodule
95 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
96 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
97 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
98 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
99 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
100 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
101 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
102 2967728569 Sinorhizobium medicae USDA1607 Isolate Nodule
103 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
104 2967748971 Sinorhizobium meliloti USDA1024A Isolate Nodule
105 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
106 2967769361 Sinorhizobium meliloti USDA1005 Isolate Nodule
107 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
108 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
109 2970026789 Sinorhizobium medicae USDA1611 Isolate Nodule
110 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
111 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
112 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
113 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
114 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
115 2970076120 Sinorhizobium meliloti USDA1706 Isolate Nodule
116 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
117 2970116247 Sinorhizobium meliloti USDA1566 Isolate Nodule
118 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
119 2970149975 Sinorhizobium meliloti USDA1215 Isolate Nodule
120 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
121 2970164137 Sinorhizobium meliloti USDA1018 Isolate Nodule
122 2970177841 Sinorhizobium meliloti USDA1533 Isolate Nodule
123 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
124 2977516862 Sinorhizobium meliloti USDA1791 Isolate Nodule
125 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
126 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
127 2977544691 Sinorhizobium medicae USDA1631 Isolate Nodule
128 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
129 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
130 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
131 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
132 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
133 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
134 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
135 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
136 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
137 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
138 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
139 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
140 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
141 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
142 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
143 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
144 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
145 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
146 3300033464 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules Metagenome Nodule
147 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
148 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
149 648276728 Sinorhizobium meliloti BL225C Isolate Nodule
150 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 26.47
Metatranscriptomes 0
Isolates 73.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.94
Nodule 94.85
Rhizoplane 0
Rhizosphere 0.37
Stem 0
Stem Tuber 0
Unclassified 1.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1002022 3300002987 Bacteria 8028
2 JGI25160J50197_1002885 3300003354 Bacteria 7866
3 JGI25161J50226_1001316 3300003374 Bacteria 7785
4 Ga0055543_1001802 3300004625 Bacteria 7904
5 Ga0065165_1004902 3300005262 Bacteria 7904
6 Ga0079104_1002522 3300006946 Bacteria 9720
7 Ga0079104_1002575 3300006946 Bacteria 9536
8 Ga0079104_1008820 3300006946 Bacteria 3473
9 Ga0079104_1009035 3300006946 Bacteria 3417
10 Ga0079104_1020876 3300006946 Bacteria 1793
11 Ga0099826_10000183 3300006948 Bacteria 26364
12 Ga0099826_10001903 3300006948 Bacteria 13063
13 Ga0099826_10006053 3300006948 Bacteria 8762
14 Ga0099826_10033449 3300006948 Bacteria 3689
15 Ga0228711_1000231 3300022739 Viruses 58921
16 Ga0228711_1000729 3300022739 Bacteria 43459
17 Ga0228711_1000802 3300022739 Bacteria 42153
18 Ga0228711_1011080 3300022739 Bacteria 11610
19 Ga0228711_1012002 3300022739 Bacteria 10780
20 Ga0228711_1017169 3300022739 Bacteria 7305
21 Ga0228710_1000809 3300022740 Bacteria 43448
22 Ga0228710_1003673 3300022740 Bacteria 24335
23 Ga0228710_1007262 3300022740 Bacteria 16452
24 Ga0228710_1008371 3300022740 Bacteria 14848
25 Ga0228710_1008404 3300022740 Bacteria 14809
26 Ga0228710_1011245 3300022740 Bacteria 11632
27 Ga0228710_1015077 3300022740 Bacteria 8618
28 Ga0228710_1015203 3300022740 Bacteria 8533
29 Ga0228710_1017115 3300022740 Bacteria 7334
30 Ga0228710_1017166 3300022740 Bacteria 7306
31 Ga0228710_1017767 3300022740 Bacteria 6950
32 Ga0209436_105311 3300025208 Bacteria 2988
33 Ga0209130_1002893 3300025284 Bacteria 7918
34 Ga0207426_1000701 3300025302 Bacteria 39655
35 Ga0209281_1000806 3300027111 Bacteria 28750
36 Ga0209281_1000869 3300027111 Bacteria 26253
37 Ga0209281_1000933 3300027111 Bacteria 24035
38 Ga0209281_1001090 3300027111 Bacteria 19918
39 Ga0209281_1001323 3300027111 Bacteria 15641
40 Ga0209281_1001381 3300027111 Bacteria 14866
41 Ga0209281_1001689 3300027111 Bacteria 11535
42 Ga0209281_1003032 3300027111 Bacteria 5924
43 Ga0209281_1004313 3300027111 Bacteria 4293
44 Ga0209281_1005247 3300027111 Bacteria 3641
45 Ga0209282_1000110 3300027666 Bacteria 53599
46 Ga0209282_1000138 3300027666 Bacteria 42884
47 Ga0209282_1000157 3300027666 Bacteria 39435
48 Ga0209282_1000234 3300027666 Bacteria 28665
49 Ga0209282_1017369 3300027666 Bacteria 4577
50 Ga0315914_1000381 3300031967 Bacteria 53028
51 Ga0315914_1001029 3300031967 Bacteria 39827
52 Ga0315914_1002253 3300031967 Bacteria 29531
53 Ga0315914_1002655 3300031967 Bacteria 27372
54 Ga0315914_1005808 3300031967 Bacteria 17796
55 Ga0315914_1006745 3300031967 Bacteria 16151
56 Ga0315914_1010980 3300031967 Bacteria 11057
57 Ga0315914_1014021 3300031967 Bacteria 8691
58 Ga0315913_1000080 3300033430 Bacteria 53028
59 Ga0315913_1000123 3300033430 Bacteria 48434
60 Ga0315913_1000159 3300033430 Bacteria 46348
61 Ga0315913_1000270 3300033430 Bacteria 40870
62 Ga0315913_1003993 3300033430 Bacteria 17796
63 Ga0315913_1004938 3300033430 Bacteria 16152
64 Ga0315913_1005349 3300033430 Bacteria 15581
65 Ga0315913_1013910 3300033430 Bacteria 8680
66 Ga0315915_1000191 3300033464 Bacteria 53028
67 Ga0315915_1005268 3300033464 Bacteria 16151
68 Ga0315915_1005620 3300033464 Bacteria 15581
69 Ga0315915_1008625 3300033464 Bacteria 11851
70 Ga0315915_1010209 3300033464 Bacteria 10479
71 Ga0439449_0018059 3300042007 Bacteria 2648
72 Ga0496118_0144926 3300048921 Bacteria 1497

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2802429633 2806049613 297
2 iso_pu_bacteria 2915993759 2916000245 301
3 iso_pu_bacteria 2921244191 2921245707 301
4 iso_pu_bacteria 2921296804 2921299875 301
5 iso_pu_bacteria 2937071275 2937077630 301
6 iso_pu_bacteria 2937091812 2937098250 301
7 iso_pu_bacteria 2937098957 2937105052 301
8 iso_pu_bacteria 2957464669 2957464880 301
9 iso_pu_bacteria 2964621998 2964623337 301
10 iso_pu_bacteria 2964656573 2964657316 301
11 iso_pu_bacteria 2964685014 2964685613 301
12 iso_pu_bacteria 2967678726 2967685947 301
13 iso_pu_bacteria 2967714385 2967716982 301
14 iso_pu_bacteria 2970047711 2970053762 301
15 iso_pu_bacteria 2970184632 2970188396 301
16 iso_pu_bacteria 2977537788 2977540094 301
17 iso_pu_bacteria 2977551784 2977557379 301
18 iso_pu_bacteria 2508501122 2509107110 303
19 iso_pu_bacteria 2513237143 2513902540 303
20 iso_pu_bacteria 2551306089 2551712674 303
21 iso_pu_bacteria 2791355091 2792623077 303
22 iso_pu_bacteria 2802428859 2802728084 303
23 iso_pu_bacteria 2916035215 2916041397 303
24 iso_pu_bacteria 2916068649 2916072979 303
25 iso_pu_bacteria 2936996657 2937000183 303
26 iso_pu_bacteria 2937036028 2937042004 303
27 iso_pu_bacteria 2937049772 2937055774 303
28 iso_pu_bacteria 2937106411 2937108495 303
29 iso_pu_bacteria 2957388812 2957394976 303
30 iso_pu_bacteria 2957498199 2957500999 303
31 iso_pu_bacteria 2957498199 2957501341 303
32 iso_pu_bacteria 2960652885 2960659522 303
33 iso_pu_bacteria 2964656573 2964660080 303
34 iso_pu_bacteria 2964656573 2964661383 303
35 iso_pu_bacteria 2964698721 2964700172 303
36 iso_pu_bacteria 2967664464 2967665562 303
37 iso_pu_bacteria 2967706974 2967713732 303
38 iso_pu_bacteria 2967762386 2967765162 303
39 iso_pu_bacteria 2970033650 2970036785 303
40 iso_pu_bacteria 2970040964 2970047448 303
41 iso_pu_bacteria 2970047711 2970049371 303
42 iso_pu_bacteria 2970116247 2970122034 303
43 iso_pu_bacteria 2977579622 2977580304 303
44 iso_pu_bacteria 8003992118 8003992909 303
45 iso_pu_bacteria 2513237140 2513886440 304
46 iso_pu_bacteria 2791355092 2792626852 304
47 iso_pu_bacteria 2916028427 2916029217 304
48 iso_pu_bacteria 2924165586 2924167641 304
49 iso_pu_bacteria 2960603979 2960605791 304
50 iso_pu_bacteria 2967775926 2967776248 304
51 iso_pu_bacteria 2524023207 2524454719 305
52 iso_pu_bacteria 2924207177 2924209259 305
53 iso_pu_bacteria 2957443900 2957445751 305
54 iso_pu_bacteria 2957450854 2957451259 305
55 iso_pu_bacteria 2960660292 2960662131 305
56 iso_pu_bacteria 2970109326 2970110904 305
57 3300006946 Ga0079104_1002575 Ga0079104_10025755 306
58 3300027111 Ga0209281_1000869 Ga0209281_10008695 306
59 3300006946 Ga0079104_1002522 Ga0079104_100252213 307
60 3300006946 Ga0079104_1009035 Ga0079104_10090355 307
61 3300006948 Ga0099826_10000183 Ga0099826_1000018332 307
62 3300022739 Ga0228711_1000729 Ga0228711_100072959 307
63 3300022739 Ga0228711_1000802 Ga0228711_100080245 307
64 3300022739 Ga0228711_1017169 Ga0228711_10171691 307
65 3300022740 Ga0228710_1000809 Ga0228710_10008095 307
66 3300022740 Ga0228710_1017115 Ga0228710_10171151 307
67 3300022740 Ga0228710_1017166 Ga0228710_101716618 307
68 3300027111 Ga0209281_1001381 Ga0209281_10013811 307
69 3300027111 Ga0209281_1003032 Ga0209281_100303210 307
70 3300027111 Ga0209281_1005247 Ga0209281_10052475 307
71 3300027666 Ga0209282_1000110 Ga0209282_100011058 307
72 3300027666 Ga0209282_1000138 Ga0209282_100013814 307
73 3300031967 Ga0315914_1001029 Ga0315914_100102946 307
74 3300031967 Ga0315914_1005808 Ga0315914_100580812 307
75 3300031967 Ga0315914_1010980 Ga0315914_101098013 307
76 3300033430 Ga0315913_1000159 Ga0315913_100015914 307
77 3300033430 Ga0315913_1003993 Ga0315913_100399315 307
78 3300033430 Ga0315913_1005349 Ga0315913_100534913 307
79 3300033464 Ga0315915_1005620 Ga0315915_100562013 307
80 3300033464 Ga0315915_1008625 Ga0315915_10086251 307
81 3300033464 Ga0315915_1010209 Ga0315915_10102091 307
82 3300042007 Ga0439449_0018059 Ga0439449_0018059_553_1476 307
83 iso_pu_bacteria 2509276019 2509379180 307
84 iso_pu_bacteria 2513237091 2513618499 307
85 iso_pu_bacteria 2802428858 2802718956 307
86 iso_pu_bacteria 2802428862 2802744798 307
87 iso_pu_bacteria 2924214083 2924220887 307
88 iso_pu_bacteria 2957388812 2957389974 307
89 iso_pu_bacteria 2977544691 2977549258 307
90 iso_pu_bacteria 2924144063 2924148311 308
91 iso_pu_bacteria 2957415311 2957418734 308
92 iso_pu_bacteria 2957443900 2957446978 308
93 iso_pu_bacteria 2957471148 2957473483 308
94 iso_pu_bacteria 2960660292 2960663453 308
95 iso_pu_bacteria 2964643177 2964644546 308
96 iso_pu_bacteria 2964678106 2964682479 308
97 iso_pu_bacteria 2967769361 2967775784 308
98 iso_pu_bacteria 648276728 648740642 308
99 3300022739 Ga0228711_1000231 Ga0228711_100023163 309
100 3300022740 Ga0228710_1011245 Ga0228710_10112454 309
101 3300022740 Ga0228710_1017767 Ga0228710_10177674 309
102 3300033430 Ga0315913_1000123 Ga0315913_100012359 311
103 3300027111 Ga0209281_1001689 Ga0209281_100168921 312
104 iso_pu_bacteria 2512047086 2512528603 316
105 iso_pu_bacteria 2937119839 2937124183 316
106 3300022739 Ga0228711_1011080 Ga0228711_101108016 318
107 3300022740 Ga0228710_1008404 Ga0228710_100840410 318
108 iso_pu_bacteria 2896384573 2896390857 318
109 iso_pu_bacteria 2960687367 2960688733 318
110 iso_pu_bacteria 2970149975 2970153377 318
111 iso_pu_bacteria 2511231052 2511501890 319
112 iso_pu_bacteria 2896384573 2896387424 319
113 iso_pu_bacteria 2913295892 2913297645 319
114 iso_pu_bacteria 2915986958 2915990637 319
115 iso_pu_bacteria 2937056579 2937062529 319
116 iso_pu_bacteria 2937098957 2937099441 319
117 iso_pu_bacteria 2957422303 2957425453 319
118 iso_pu_bacteria 2964607997 2964613852 319
119 iso_pu_bacteria 2964628898 2964634491 319
120 iso_pu_bacteria 2967678726 2967686040 319
121 iso_pu_bacteria 2967714385 2967716879 319
122 iso_pu_bacteria 2967728569 2967732995 319
123 iso_pu_bacteria 2967748971 2967750483 319
124 iso_pu_bacteria 2970019648 2970025463 319
125 iso_pu_bacteria 2977530762 2977536057 319
126 iso_pu_bacteria 2977537788 2977543463 319
127 iso_pu_bacteria 2977551784 2977558127 319
128 iso_pu_bacteria 2515154107 2515608294 320
129 iso_pu_bacteria 2850079185 2850083528 320
130 iso_pu_bacteria 2915993759 2915996366 320
131 iso_pu_bacteria 2916041962 2916043682 320
132 iso_pu_bacteria 2921208531 2921212977 320
133 iso_pu_bacteria 2921250672 2921253691 320
134 iso_pu_bacteria 2921296804 2921299418 320
135 iso_pu_bacteria 2924207177 2924211400 320
136 iso_pu_bacteria 2937091812 2937096042 320
137 iso_pu_bacteria 2957415311 2957416982 320
138 iso_pu_bacteria 2957430029 2957431127 320
139 iso_pu_bacteria 2957505466 2957505945 320
140 iso_pu_bacteria 2960584000 2960586754 320
141 iso_pu_bacteria 2960610863 2960614090 320
142 iso_pu_bacteria 2964663802 2964666974 320
143 iso_pu_bacteria 2967693043 2967699289 320
144 iso_pu_bacteria 2967748971 2967753263 320
145 iso_pu_bacteria 2970047711 2970052725 320
146 iso_pu_bacteria 2970061556 2970067310 320
147 iso_pu_bacteria 2970068827 2970072372 320
148 iso_pu_bacteria 2970184632 2970187143 320
149 iso_pu_bacteria 2970184632 2970187839 320
150 iso_pu_bacteria 2977516862 2977520787 320
151 iso_pu_bacteria 2896384573 2896392188 321
152 iso_pu_bacteria 2916021584 2916027325 321
153 iso_pu_bacteria 2916055098 2916057284 321
154 iso_pu_bacteria 2921263974 2921266359 321
155 iso_pu_bacteria 2924172951 2924173739 321
156 iso_pu_bacteria 2924228884 2924232099 321
157 iso_pu_bacteria 2937042894 2937045945 321
158 iso_pu_bacteria 2957478035 2957479665 321
159 iso_pu_bacteria 2957498199 2957502623 321
160 iso_pu_bacteria 2960617483 2960623644 321
161 iso_pu_bacteria 2970047711 2970053344 321
162 iso_pu_bacteria 2937016420 2937018520 322
163 iso_pu_bacteria 2960660292 2960664123 322
164 iso_pu_bacteria 2977537788 2977538748 322
165 iso_pu_bacteria 2924158325 2924163715 323
166 iso_pu_bacteria 2937098957 2937101008 323
167 iso_pu_bacteria 2957443900 2957449047 323
168 iso_pu_bacteria 2960660292 2960665680 323
169 iso_pu_bacteria 2964643177 2964644088 323
170 iso_pu_bacteria 2964698721 2964702721 323
171 iso_pu_bacteria 2967678726 2967684805 323
172 iso_pu_bacteria 2970019648 2970023931 323
173 iso_pu_bacteria 2970026789 2970032150 323
174 iso_pu_bacteria 2970156795 2970158445 323
175 iso_pu_bacteria 2970164137 2970165323 323
176 iso_pu_bacteria 2977551784 2977557188 323
177 iso_pu_bacteria 8003992118 8003994660 323
178 iso_pu_bacteria 2921296804 2921298479 324
179 3300006948 Ga0099826_10001903 Ga0099826_1000190316 325
180 iso_pu_bacteria 2916000859 2916003149 325
181 iso_pu_bacteria 2916035215 2916038497 325
182 iso_pu_bacteria 2916041962 2916045203 325
183 iso_pu_bacteria 2921296804 2921302923 325
184 iso_pu_bacteria 2937009748 2937016343 325
185 iso_pu_bacteria 2937063883 2937068418 325
186 iso_pu_bacteria 2937071275 2937072416 325
187 iso_pu_bacteria 2937091812 2937095927 325
188 iso_pu_bacteria 2937098957 2937100615 325
189 iso_pu_bacteria 2964656573 2964662024 325
190 iso_pu_bacteria 2964670856 2964673495 325
191 iso_pu_bacteria 2977516862 2977518717 325
192 iso_pu_bacteria 2517487022 2517571163 326
193 iso_pu_bacteria 2967721400 2967723218 326
194 3300006948 Ga0099826_10006053 Ga0099826_100060535 327
195 3300022740 Ga0228710_1015077 Ga0228710_10150775 327
196 3300031967 Ga0315914_1014021 Ga0315914_10140215 327
197 3300033430 Ga0315913_1013910 Ga0315913_10139105 327
198 iso_pu_bacteria 2936996657 2936998468 330
199 iso_pu_bacteria 2957491536 2957493989 332
200 iso_pu_bacteria 2964712639 2964717412 332
201 iso_pu_bacteria 2970076120 2970080988 332
202 iso_pu_bacteria 2937036028 2937040999 335
203 iso_pu_bacteria 2937113482 2937115779 335
204 iso_pu_bacteria 2960610863 2960615132 335
205 iso_pu_bacteria 2937009748 2937012707 336
206 iso_pu_bacteria 2551306089 2551712563 337
207 iso_pu_bacteria 2551306085 2551687248 338
208 iso_pu_bacteria 2937036028 2937042350 338
209 iso_pu_bacteria 2937126314 2937127603 338
210 iso_pu_bacteria 2957443900 2957446255 338
211 iso_pu_bacteria 2957505466 2957507711 338
212 iso_pu_bacteria 2957505466 2957507811 338
213 iso_pu_bacteria 2960645483 2960646277 338
214 iso_pu_bacteria 2960660292 2960665457 338
215 iso_pu_bacteria 2964705432 2964712277 338
216 iso_pu_bacteria 2967671571 2967678715 338
217 iso_pu_bacteria 2967735183 2967739410 338
218 iso_pu_bacteria 2970184632 2970187211 338
219 iso_pu_bacteria 2977530762 2977535743 338
220 iso_pu_bacteria 2970177841 2970178948 339
221 iso_pu_bacteria 2960603979 2960608476 340
222 iso_pu_bacteria 2960624210 2960625754 340
223 iso_pu_bacteria 2970019648 2970022392 340
224 iso_pu_bacteria 2970156795 2970159868 340
225 iso_pu_bacteria 2970164137 2970167749 340
226 3300006946 Ga0079104_1020876 Ga0079104_10208762 341
227 3300022739 Ga0228711_1012002 Ga0228711_101200215 341
228 3300022740 Ga0228710_1003673 Ga0228710_10036731 341
229 3300022740 Ga0228710_1007262 Ga0228710_10072621 341
230 3300027111 Ga0209281_1000806 Ga0209281_100080631 341
231 3300031967 Ga0315914_1000381 Ga0315914_10003812 341
232 3300033430 Ga0315913_1000080 Ga0315913_100008077 341
233 3300033464 Ga0315915_1000191 Ga0315915_10001912 341
234 iso_pu_bacteria 2802428860 2802734660 341
235 iso_pu_bacteria 2802428861 2802738598 341
236 iso_pu_bacteria 2921237296 2921242397 341
237 iso_pu_bacteria 2967693043 2967696343 341
238 iso_pu_bacteria 2967706974 2967708214 341
239 iso_pu_bacteria 2967714385 2967719652 341
240 iso_pu_bacteria 2970129317 2970130085 341
241 3300006946 Ga0079104_1008820 Ga0079104_10088204 342
242 3300027111 Ga0209281_1004313 Ga0209281_10043134 342
243 3300027666 Ga0209282_1000234 Ga0209282_100023416 342
244 3300031967 Ga0315914_1002253 Ga0315914_100225316 342
245 3300033430 Ga0315913_1000270 Ga0315913_100027019 342
246 iso_pu_bacteria 2937056579 2937058529 342
247 iso_pu_bacteria 2964607997 2964610415 342
248 3300006948 Ga0099826_10033449 Ga0099826_100334496 343
249 3300022740 Ga0228710_1008371 Ga0228710_100837114 343
250 3300027666 Ga0209282_1017369 Ga0209282_10173693 343
251 3300031967 Ga0315914_1002655 Ga0315914_10026552 343
252 iso_pu_bacteria 2937119839 2937123928 343
253 iso_pu_bacteria 2960674078 2960679646 343
254 iso_pu_bacteria 2970149975 2970150721 343
255 3300027111 Ga0209281_1001323 Ga0209281_100132317 345
256 3300027666 Ga0209282_1000157 Ga0209282_100015721 345
257 3300022740 Ga0228710_1015203 Ga0228710_101520318 346
258 3300027111 Ga0209281_1000933 Ga0209281_10009331 346
259 3300027111 Ga0209281_1001090 Ga0209281_10010908 346
260 3300031967 Ga0315914_1006745 Ga0315914_100674517 346
261 3300033430 Ga0315913_1004938 Ga0315913_100493817 346
262 3300033464 Ga0315915_1005268 Ga0315915_100526817 346
263 iso_pu_bacteria 2964628898 2964631494 346
264 3300002987 JGI25159J45721_1002022 JGI25159J45721_100202212 352
265 3300003354 JGI25160J50197_1002885 JGI25160J50197_100288511 352
266 3300003374 JGI25161J50226_1001316 JGI25161J50226_10013164 352
267 3300004625 Ga0055543_1001802 Ga0055543_100180211 352
268 3300005262 Ga0065165_1004902 Ga0065165_100490211 352
269 3300025208 Ga0209436_105311 Ga0209436_1053114 352
270 3300025284 Ga0209130_1002893 Ga0209130_100289313 352
271 3300025302 Ga0207426_1000701 Ga0207426_100070139 352
272 3300048921 Ga0496118_0144926 Ga0496118_0144926_370_1428 352

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04679

DNA_ligase_A_C

ATP dependent DNA ligase C terminal region

268

358

0.93

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

67

250

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7rpw-assembly1.cif.gz_E archaeal dna ligase and heterotrimeric pcna in complex with adenylated dna 0.6843 48 230
3ty5-assembly1.cif.gz_A crystal structure of c. thermocellum pnkp ligase domain in complex with atp 0.6702 60 230
3ty9-assembly2.cif.gz_A crystal structure of c. thermocellum pnkp ligase domain amp-adenylate 0.6655 60 230
3ty9-assembly4.cif.gz_C crystal structure of c. thermocellum pnkp ligase domain amp-adenylate 0.6634 60 230
3ty9-assembly3.cif.gz_B crystal structure of c. thermocellum pnkp ligase domain amp-adenylate 0.6611 60 230
ID Description Score Start End Superfamily
af_P9WNV3_639_759_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.8412 232 335 2.40.50.140
2hixA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.7598 231 343 2.40.50.140
af_Q54CR9_380_600_3.30.470.30 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.7518 60 230 3.30.470.30
af_L0TDE1_203_339_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.7432 234 335 2.40.50.140
af_A0A1D8PJ08_615_770_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.7425 236 339 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A4R3XH52-F1-model_v4 DNA ligase (ATP) (EC 6.5.1.1) 0.901 238 336 GO:0003910
GO:0006281
GO:0006310
GO:0016020
AF-A0A560LK28-F1-model_v4 DNA ligase (ATP) (EC 6.5.1.1) 0.8622 238 344 GO:0003910
GO:0006281
GO:0006310
AF-A0A7W5LDD5-F1-model_v4 deleted 0.8552 239 342
AF-A0A1M3P2W6-F1-model_v4 DNA ligase (ATP) (EC 6.5.1.1) 0.8511 232 344 GO:0003910
GO:0006281
GO:0006310
AF-A0A560LK28-F1-model_v4 DNA ligase (ATP) (EC 6.5.1.1) 0.8327 238 344 GO:0003910
GO:0006281
GO:0006310

Feature Viewer

pLDDT pTM Quality
68.82 0.57 Medium
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Predicted Structure (AlphaFold2)

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