F366203
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 256 | 185 | 512 | 198 |
Family's Representative Sequence
| Representative Sequence | 3300005329|Ga0070683_100031855|Ga0070683_1000318552 |
| Length | 232 |
| Sequence | VTIYTARRPSRVLGVDPGLTRCGLGVVEGVPGRPPTLVATGVVRTGADEDIAVRLLAIEAEIERWLDEYRPDTVAVERVFAQHNVRTVMGTAQAGTVAIVCAARRGLPVALHTPSEVKAAVTGSGRADKDQVTLMVMRLLRLTDRPKPADAADALALAICHLWRAPALNARRGGQASRADQEPQPRETRSVPQAPSRGGAPARGQRGRDSPMLGGVTGGTAPGGDTAIGDTA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 2 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 3 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 4 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 7 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Metagenome | Rhizosphere |
| 10 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 12 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 13 | 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Metagenome | Rhizosphere |
| 14 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 19 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 20 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 21 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 22 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 25 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 26 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 27 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 28 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 29 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 30 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 31 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 32 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 33 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 35 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 36 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 38 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 56 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 57 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 58 | 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 87 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 88 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 89 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 90 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 91 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 92 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 93 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 94 | 3300035091 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 | Metagenome | Rhizosphere |
| 95 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 96 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 97 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 98 | 3300038735 | Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 | Metagenome | Unclassified |
| 99 | 3300038742 | Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 | Metagenome | Unclassified |
| 100 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 101 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 102 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 103 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 104 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046461 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046475 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300046476 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046531 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046533 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300046642 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300046680 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300046681 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 132 | 3300046690 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere | Metagenome | Rhizosphere |
| 133 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 134 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 135 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 136 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 137 | 3300047322 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere | Metagenome | Rhizosphere |
| 138 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 139 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 140 | 3300048089 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere | Metagenome | Rhizosphere |
| 141 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 142 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 143 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 144 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 145 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 146 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 147 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 148 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 149 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 150 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 151 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 152 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 153 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 154 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 155 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 156 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 157 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 158 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 159 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 160 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 161 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 162 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 163 | 2515154155 | Actinopolymorpha alba DSM 45243 | Isolate | Rhizosphere |
| 164 | 2643221635 | Yonghaparkia sp. Root332 | Isolate | Unclassified |
| 165 | 2808606522 | Amycolatopsis sp. BJA-103 | Isolate | Unclassified |
| 166 | 2816332139 | Pseudonocardia kunmingensis DSM 45301 | Isolate | Unclassified |
| 167 | 2827628540 | Actinopolymorpha cephalotaxi DSM 45117 | Isolate | Rhizosphere |
| 168 | 2863067949 | Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) | Isolate | Rhizosphere |
| 169 | 2866612099 | Amycolatopsis suaedae 8-3EHSu | Isolate | Unclassified |
| 170 | 2867475112 | Streptomyces sp. TM32 | Isolate | Unclassified |
| 171 | 2899370129 | Amycolatopsis alkalitolerans SYSUP0005 | Isolate | Stem Tuber |
| 172 | 2904765812 | Rhodococcus fascians 1590 | Isolate | Rhizosphere |
| 173 | 2904770941 | Rhodococcus fascians 1339 | Isolate | Rhizosphere |
| 174 | 2908811453 | Rhodococcus sp. 1R11 | Isolate | Unclassified |
| 175 | 2915768154 | Amycolatopsis pittospori PIP199 | Isolate | Unclassified |
| 176 | 2919420072 | Rhodococcus fascians 3241 | Isolate | Rhizosphere |
| 177 | 2919432681 | Rhodococcus sp. 3258 | Isolate | Rhizosphere |
| 178 | 2928142448 | Prescottella equi DPS 2018 | Isolate | Unclassified |
| 179 | 2990059506 | Streptomyces sp. CAP261 | Isolate | Unclassified |
| 180 | 3006393351 | Streptomyces sp. SID4985 | Isolate | Unclassified |
| 181 | 8023623736 | Streptomyces sp. 111WW2 | Isolate | Unclassified |
| 182 | 8047710418 | Umezawaea endophytica DSM 103496 | Isolate | Unclassified |
| 183 | 8048406513 | Streptomyces heilongjiangensis NEAU-W2 | Isolate | Unclassified |
| 184 | 8053945823 | Actinomadura terrae OS3-83 | Isolate | Rhizosphere |
| 185 | 8057345674 | Herbiconiux aconitum CPCC 205763 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.84 |
| Metatranscriptomes | 1.17 |
| Isolates | 8.98 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.78 |
| Nodule | 0 |
| Rhizoplane | 2.34 |
| Rhizosphere | 88.28 |
| Stem | 0 |
| Stem Tuber | 0.39 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070683_100031855 | 3300005329 | Bacteria | 4797 |
| 2 | JGI24737J22298_10041713 | 3300001990 | Bacteria | 1407 |
| 3 | rootH1_10157770 | 3300003316 | Bacteria | 1515 |
| 4 | Ga0070683_100362422 | 3300005329 | Bacteria | 1380 |
| 5 | Ga0070660_100150331 | 3300005339 | Bacteria | 1872 |
| 6 | Ga0070661_100526141 | 3300005344 | Bacteria | 949 |
| 7 | Ga0070692_10213325 | 3300005345 | Bacteria | 1137 |
| 8 | Ga0070668_100095699 | 3300005347 | Bacteria | 2346 |
| 9 | Ga0070667_100411822 | 3300005367 | Bacteria | 1232 |
| 10 | Ga0070709_10000283 | 3300005434 | Bacteria | 32257 |
| 11 | Ga0070714_100000403 | 3300005435 | Bacteria | 31860 |
| 12 | Ga0070714_100016995 | 3300005435 | Bacteria | 5886 |
| 13 | Ga0070714_100134542 | 3300005435 | Bacteria | 2212 |
| 14 | Ga0070714_100135911 | 3300005435 | Bacteria | 2201 |
| 15 | Ga0070714_100227232 | 3300005435 | Bacteria | 1718 |
| 16 | Ga0070713_100000848 | 3300005436 | Bacteria | 19595 |
| 17 | Ga0070713_100003915 | 3300005436 | Bacteria | 9880 |
| 18 | Ga0070713_100154084 | 3300005436 | Bacteria | 2047 |
| 19 | Ga0070713_100280413 | 3300005436 | Bacteria | 1529 |
| 20 | Ga0070710_10000160 | 3300005437 | Bacteria | 31176 |
| 21 | Ga0070710_10028935 | 3300005437 | Bacteria | 2968 |
| 22 | Ga0070701_10214376 | 3300005438 | Bacteria | 1145 |
| 23 | Ga0070711_100000349 | 3300005439 | Bacteria | 23811 |
| 24 | Ga0070711_100034276 | 3300005439 | Bacteria | 3385 |
| 25 | Ga0070705_100033621 | 3300005440 | Bacteria | 2860 |
| 26 | Ga0070663_100000109 | 3300005455 | Bacteria | 38563 |
| 27 | Ga0070663_100012860 | 3300005455 | Bacteria | 5312 |
| 28 | Ga0070663_100345689 | 3300005455 | Bacteria | 1203 |
| 29 | Ga0070678_100368326 | 3300005456 | Bacteria | 1240 |
| 30 | Ga0070681_10293109 | 3300005458 | Bacteria | 1537 |
| 31 | Ga0070707_100573416 | 3300005468 | Bacteria | 1091 |
| 32 | Ga0070698_100016867 | 3300005471 | Bacteria | 7703 |
| 33 | Ga0070679_100169922 | 3300005530 | Bacteria | 2153 |
| 34 | Ga0070696_100500139 | 3300005546 | Bacteria | 967 |
| 35 | Ga0070665_100439338 | 3300005548 | Bacteria | 1314 |
| 36 | Ga0068855_100047634 | 3300005563 | Bacteria | 5063 |
| 37 | Ga0068855_100212019 | 3300005563 | Bacteria | 2176 |
| 38 | Ga0068857_100037243 | 3300005577 | Bacteria | 4308 |
| 39 | Ga0068857_100107654 | 3300005577 | Bacteria | 2504 |
| 40 | Ga0068856_100035347 | 3300005614 | Bacteria | 4896 |
| 41 | Ga0068856_100077041 | 3300005614 | Bacteria | 3304 |
| 42 | Ga0068856_100254772 | 3300005614 | Bacteria | 1770 |
| 43 | Ga0068856_100460882 | 3300005614 | Bacteria | 1292 |
| 44 | Ga0068852_100582802 | 3300005616 | Bacteria | 1121 |
| 45 | Ga0068859_100043622 | 3300005617 | Bacteria | 4508 |
| 46 | Ga0068864_100022127 | 3300005618 | Bacteria | 5330 |
| 47 | Ga0068863_100022644 | 3300005841 | Bacteria | 6000 |
| 48 | Ga0081455_10018932 | 3300005937 | Bacteria | 6529 |
| 49 | Ga0081539_10171880 | 3300005985 | Bacteria | 1024 |
| 50 | Ga0081539_10176637 | 3300005985 | Bacteria | 1005 |
| 51 | Ga0070717_10001151 | 3300006028 | Bacteria | 17860 |
| 52 | Ga0070717_10002215 | 3300006028 | Bacteria | 13665 |
| 53 | Ga0070717_11258624 | 3300006028 | Bacteria | 673 |
| 54 | Ga0070716_100000732 | 3300006173 | Bacteria | 14013 |
| 55 | Ga0070716_100042110 | 3300006173 | Bacteria | 2548 |
| 56 | Ga0070712_100434529 | 3300006175 | Bacteria | 1090 |
| 57 | Ga0070712_100656484 | 3300006175 | Bacteria | 891 |
| 58 | Ga0097621_100113853 | 3300006237 | Bacteria | 2288 |
| 59 | Ga0068871_100023618 | 3300006358 | Bacteria | 4760 |
| 60 | Ga0097620_100043623 | 3300006931 | Bacteria | 4508 |
| 61 | Ga0105251_10285678 | 3300009011 | Bacteria | 746 |
| 62 | Ga0105240_10744405 | 3300009093 | Bacteria | 1066 |
| 63 | Ga0105245_10027254 | 3300009098 | Bacteria | 5035 |
| 64 | Ga0105247_10090540 | 3300009101 | Bacteria | 1941 |
| 65 | Ga0105248_10052347 | 3300009177 | Bacteria | 4581 |
| 66 | Ga0105238_10215163 | 3300009551 | Bacteria | 1898 |
| 67 | Ga0105238_10717130 | 3300009551 | Bacteria | 1013 |
| 68 | Ga0105239_10605026 | 3300010375 | Bacteria | 1250 |
| 69 | Ga0157370_10011686 | 3300013104 | Bacteria | 9164 |
| 70 | Ga0157369_10112318 | 3300013105 | Bacteria | 2895 |
| 71 | Ga0157369_10254469 | 3300013105 | Bacteria | 1833 |
| 72 | Ga0157374_10047922 | 3300013296 | Bacteria | 3963 |
| 73 | Ga0157372_11835782 | 3300013307 | Bacteria | 697 |
| 74 | Ga0157375_10251197 | 3300013308 | Bacteria | 1929 |
| 75 | Ga0163163_10031291 | 3300014325 | Bacteria | 5135 |
| 76 | Ga0163163_10060063 | 3300014325 | Bacteria | 3763 |
| 77 | Ga0157380_10301790 | 3300014326 | Bacteria | 1475 |
| 78 | Ga0157379_10033961 | 3300014968 | Bacteria | 4547 |
| 79 | Ga0157379_10184280 | 3300014968 | Bacteria | 1886 |
| 80 | Ga0157376_10005937 | 3300014969 | Bacteria | 8577 |
| 81 | Ga0206354_11708317 | 3300020081 | Bacteria | 1455 |
| 82 | Ga0206353_11658740 | 3300020082 | Bacteria | 1050 |
| 83 | Ga0206353_11961286 | 3300020082 | Bacteria | 3859 |
| 84 | Ga0207426_1031575 | 3300025302 | Bacteria | 1727 |
| 85 | Ga0207692_10000102 | 3300025898 | Bacteria | 25160 |
| 86 | Ga0207688_10346583 | 3300025901 | Bacteria | 915 |
| 87 | Ga0207647_10001976 | 3300025904 | Bacteria | 15661 |
| 88 | Ga0207647_10091841 | 3300025904 | Bacteria | 1810 |
| 89 | Ga0207699_10000332 | 3300025906 | Bacteria | 25007 |
| 90 | Ga0207705_10187168 | 3300025909 | Bacteria | 1564 |
| 91 | Ga0207693_10038281 | 3300025915 | Bacteria | 3777 |
| 92 | Ga0207663_10000446 | 3300025916 | Bacteria | 17922 |
| 93 | Ga0207660_10048322 | 3300025917 | Bacteria | 3010 |
| 94 | Ga0207657_10254939 | 3300025919 | Bacteria | 1397 |
| 95 | Ga0207649_10445395 | 3300025920 | Bacteria | 976 |
| 96 | Ga0207652_10013547 | 3300025921 | Bacteria | 6595 |
| 97 | Ga0207694_10193502 | 3300025924 | Bacteria | 1653 |
| 98 | Ga0207694_10580517 | 3300025924 | Bacteria | 942 |
| 99 | Ga0207700_10000139 | 3300025928 | Bacteria | 43579 |
| 100 | Ga0207700_10010376 | 3300025928 | Bacteria | 5873 |
| 101 | Ga0207700_10143052 | 3300025928 | Bacteria | 1967 |
| 102 | Ga0207664_10000108 | 3300025929 | Bacteria | 72754 |
| 103 | Ga0207664_10010080 | 3300025929 | Bacteria | 6660 |
| 104 | Ga0207664_10449114 | 3300025929 | Bacteria | 1150 |
| 105 | Ga0207665_10000753 | 3300025939 | Bacteria | 21805 |
| 106 | Ga0207667_10011083 | 3300025949 | Bacteria | 10498 |
| 107 | Ga0207712_10219118 | 3300025961 | Bacteria | 1520 |
| 108 | Ga0207668_10005864 | 3300025972 | Bacteria | 7234 |
| 109 | Ga0207668_10375396 | 3300025972 | Bacteria | 1195 |
| 110 | Ga0207668_10851643 | 3300025972 | Bacteria | 809 |
| 111 | Ga0207658_10261881 | 3300025986 | Bacteria | 1474 |
| 112 | Ga0207678_10001736 | 3300026067 | Bacteria | 19947 |
| 113 | Ga0207678_10028744 | 3300026067 | Bacteria | 4853 |
| 114 | Ga0207678_10363534 | 3300026067 | Bacteria | 1249 |
| 115 | Ga0207702_10387476 | 3300026078 | Bacteria | 1345 |
| 116 | Ga0207702_10755525 | 3300026078 | Bacteria | 960 |
| 117 | Ga0207641_10009614 | 3300026088 | Bacteria | 7969 |
| 118 | Ga0207641_10414543 | 3300026088 | Bacteria | 1296 |
| 119 | Ga0207676_10168272 | 3300026095 | Bacteria | 1907 |
| 120 | Ga0207674_10065253 | 3300026116 | Bacteria | 3670 |
| 121 | Ga0207674_10124027 | 3300026116 | Bacteria | 2549 |
| 122 | Ga0207674_10158830 | 3300026116 | Bacteria | 2216 |
| 123 | Ga0207683_11131407 | 3300026121 | Bacteria | 726 |
| 124 | Ga0207698_10525998 | 3300026142 | Bacteria | 1155 |
| 125 | Ga0268266_10080910 | 3300028379 | Bacteria | 2831 |
| 126 | Ga0268266_10616177 | 3300028379 | Bacteria | 1043 |
| 127 | Ga0268266_10835500 | 3300028379 | Bacteria | 890 |
| 128 | Ga0268264_11266540 | 3300028381 | Bacteria | 747 |
| 129 | Ga0307512_10105358 | 3300030522 | Bacteria | 1887 |
| 130 | Ga0307512_10228032 | 3300030522 | Bacteria | 962 |
| 131 | Ga0265339_10081310 | 3300031249 | Bacteria | 1712 |
| 132 | Ga0265316_10072265 | 3300031344 | Bacteria | 2658 |
| 133 | Ga0316575_10000003 | 3300031665 | Bacteria | 134789 |
| 134 | Ga0265342_10028877 | 3300031712 | Bacteria | 3449 |
| 135 | Ga0307409_100033155 | 3300031995 | Bacteria | 3755 |
| 136 | Ga0307415_100115383 | 3300032126 | Bacteria | 2001 |
| 137 | Ga0307510_10039944 | 3300033180 | Bacteria | 5159 |
| 138 | Ga0373951_0133828 | 3300035091 | Bacteria | 684 |
| 139 | Ga0373956_0066191 | 3300035119 | Bacteria | 1643 |
| 140 | Ga0373935_0140277 | 3300035692 | Bacteria | 1632 |
| 141 | Ga0373937_0455112 | 3300036401 | Bacteria | 1215 |
| 142 | Ga0400485_10266 | 3300038735 | Bacteria | 19559 |
| 143 | Ga0400486_11169 | 3300038742 | Bacteria | 23690 |
| 144 | Ga0466965_0179534 | 3300044683 | Bacteria | 1116 |
| 145 | Ga0466963_0035160 | 3300044694 | Bacteria | 3263 |
| 146 | Ga0466968_0018247 | 3300044735 | Bacteria | 2813 |
| 147 | Ga0466967_0001565 | 3300045976 | Bacteria | 13418 |
| 148 | Ga0466967_0079972 | 3300045976 | Bacteria | 2948 |
| 149 | Ga0466967_0727041 | 3300045976 | Bacteria | 984 |
| 150 | Ga0495592_0021033 | 3300046454 | Bacteria | 4961 |
| 151 | Ga0495629_0027734 | 3300046459 | Bacteria | 4021 |
| 152 | Ga0495629_0219049 | 3300046459 | Bacteria | 1313 |
| 153 | Ga0495641_0047556 | 3300046461 | Bacteria | 1969 |
| 154 | Ga0495651_0004594 | 3300046462 | Bacteria | 10554 |
| 155 | Ga0495580_0207231 | 3300046472 | Bacteria | 1350 |
| 156 | Ga0495639_0093101 | 3300046475 | Bacteria | 1416 |
| 157 | Ga0495662_0019492 | 3300046476 | Bacteria | 3281 |
| 158 | Ga0495664_0197723 | 3300046477 | Bacteria | 1218 |
| 159 | Ga0495608_0015163 | 3300046511 | Bacteria | 5347 |
| 160 | Ga0495618_0185305 | 3300046514 | Bacteria | 1321 |
| 161 | Ga0495628_0034038 | 3300046516 | Bacteria | 4101 |
| 162 | Ga0495630_0213837 | 3300046517 | Bacteria | 1471 |
| 163 | Ga0495666_0270730 | 3300046526 | Bacteria | 771 |
| 164 | Ga0495652_0013525 | 3300046529 | Bacteria | 7345 |
| 165 | Ga0495665_0065488 | 3300046531 | Bacteria | 1918 |
| 166 | Ga0495640_0047330 | 3300046533 | Bacteria | 2976 |
| 167 | Ga0495587_0135578 | 3300046536 | Bacteria | 1406 |
| 168 | Ga0495645_0005787 | 3300046543 | Bacteria | 8525 |
| 169 | Ga0495667_0008358 | 3300046559 | Bacteria | 7023 |
| 170 | Ga0495634_0016843 | 3300046642 | Bacteria | 5221 |
| 171 | Ga0495635_0376122 | 3300046663 | Bacteria | 945 |
| 172 | Ga0495657_0034487 | 3300046675 | Bacteria | 3514 |
| 173 | Ga0495599_0007185 | 3300046678 | Bacteria | 6744 |
| 174 | Ga0495623_0015231 | 3300046679 | Bacteria | 4969 |
| 175 | Ga0495646_0060381 | 3300046680 | Bacteria | 2261 |
| 176 | Ga0495647_0055854 | 3300046681 | Bacteria | 1547 |
| 177 | Ga0495658_0378180 | 3300046683 | Bacteria | 901 |
| 178 | Ga0495613_0000407 | 3300046689 | Bacteria | 36936 |
| 179 | Ga0495613_0040521 | 3300046689 | Bacteria | 3451 |
| 180 | Ga0495624_0426297 | 3300046690 | Bacteria | 795 |
| 181 | Ga0495600_0010023 | 3300046809 | Bacteria | 5873 |
| 182 | Ga0495604_0007597 | 3300047317 | Bacteria | 8582 |
| 183 | Ga0495674_0138415 | 3300047319 | Bacteria | 2047 |
| 184 | Ga0495676_0012092 | 3300047321 | Bacteria | 7785 |
| 185 | Ga0495676_0111023 | 3300047321 | Bacteria | 2012 |
| 186 | Ga0495680_0038809 | 3300047322 | Bacteria | 3802 |
| 187 | Ga0495593_0182427 | 3300047673 | Bacteria | 1057 |
| 188 | Ga0495602_0017236 | 3300048088 | Bacteria | 7243 |
| 189 | Ga0495614_0000149 | 3300048089 | Bacteria | 25442 |
| 190 | Ga0496105_0373845 | 3300048908 | Bacteria | 1135 |
| 191 | Ga0496108_0228478 | 3300048911 | Bacteria | 1618 |
| 192 | Ga0496108_0379311 | 3300048911 | Bacteria | 1235 |
| 193 | Ga0496109_0683744 | 3300048912 | Bacteria | 963 |
| 194 | Ga0496110_0054960 | 3300048913 | Bacteria | 3503 |
| 195 | Ga0496110_1362389 | 3300048913 | Bacteria | 619 |
| 196 | Ga0496117_0000128 | 3300048920 | Bacteria | 166039 |
| 197 | Ga0496117_0379536 | 3300048920 | Bacteria | 720 |
| 198 | Ga0501033_0319115 | 3300049570 | Bacteria | 1091 |
| 199 | Ga0501034_0028841 | 3300049571 | Bacteria | 5646 |
| 200 | Ga0501034_0618393 | 3300049571 | Bacteria | 987 |
| 201 | Ga0501034_0808501 | 3300049571 | Bacteria | 830 |
| 202 | Ga0501036_0001444 | 3300049572 | Bacteria | 18258 |
| 203 | Ga0501037_0071961 | 3300049573 | Bacteria | 2515 |
| 204 | Ga0501038_0079485 | 3300049574 | Bacteria | 2765 |
| 205 | Ga0501038_0193751 | 3300049574 | Bacteria | 1634 |
| 206 | Ga0501038_0468836 | 3300049574 | Bacteria | 966 |
| 207 | Ga0501039_0033419 | 3300049575 | Bacteria | 3965 |
| 208 | Ga0501043_0033419 | 3300049579 | Bacteria | 4047 |
| 209 | Ga0501043_0141087 | 3300049579 | Bacteria | 1887 |
| 210 | Ga0501043_0255989 | 3300049579 | Bacteria | 1347 |
| 211 | Ga0501047_0000734 | 3300049581 | Bacteria | 34151 |
| 212 | Ga0501047_0076501 | 3300049581 | Bacteria | 3221 |
| 213 | Ga0501047_0397501 | 3300049581 | Bacteria | 1211 |
| 214 | Ga0501048_0465924 | 3300049582 | Bacteria | 905 |
| 215 | Ga0501070_0001065 | 3300049586 | Bacteria | 24645 |
| 216 | Ga0501070_0189795 | 3300049586 | Bacteria | 1689 |
| 217 | Ga0501074_0028638 | 3300049590 | Bacteria | 4037 |
| 218 | Ga0501074_0168096 | 3300049590 | Bacteria | 1566 |
| 219 | Ga0501080_0558766 | 3300049742 | Bacteria | 1019 |
| 220 | Ga0501035_0003800 | 3300049822 | Bacteria | 14388 |
| 221 | Ga0501035_0006714 | 3300049822 | Bacteria | 10755 |
| 222 | Ga0501035_0014381 | 3300049822 | Bacteria | 7304 |
| 223 | Ga0501035_0096303 | 3300049822 | Bacteria | 2600 |
| 224 | Ga0501044_0026219 | 3300049823 | Bacteria | 6172 |
| 225 | Ga0501044_0082562 | 3300049823 | Bacteria | 3251 |
| 226 | Ga0501044_0191511 | 3300049823 | Bacteria | 2007 |
| 227 | Ga0501044_0348764 | 3300049823 | Bacteria | 1400 |
| 228 | Ga0501044_0463914 | 3300049823 | Bacteria | 1171 |
| 229 | Ga0501044_0555269 | 3300049823 | Bacteria | 1045 |
| 230 | Ga0495601_0084366 | 3300053077 | Bacteria | 2040 |
| 231 | Ga0495619_0010974 | 3300053085 | Bacteria | 5702 |
| 232 | Ga0495619_0274219 | 3300053085 | Bacteria | 1169 |
| 233 | Ga0500559_0225095 | 3300053136 | Bacteria | 884 |
| 234 | 2515851086 | 2515154155 | Bacteria | 7985436 |
| 235 | 2644199226 | 2643221635 | Bacteria | 2632343 |
| 236 | 2809589206 | 2808606522 | Bacteria | 9488490 |
| 237 | 2816510527 | 2816332139 | Bacteria | 9138787 |
| 238 | 2827630907 | 2827628540 | Bacteria | 6858585 |
| 239 | 2863068295 | 2863067949 | Bacteria | 8541735 |
| 240 | 2866614414 | 2866612099 | Bacteria | 7543886 |
| 241 | 2867478180 | 2867475112 | Bacteria | 6909112 |
| 242 | 2899376658 | 2899370129 | Bacteria | 6781179 |
| 243 | 2904769835 | 2904765812 | Bacteria | 5369154 |
| 244 | 2904771306 | 2904770941 | Bacteria | 5580202 |
| 245 | 2908816117 | 2908811453 | Bacteria | 5478616 |
| 246 | 2915771496 | 2915768154 | Bacteria | 8424322 |
| 247 | 2919423198 | 2919420072 | Bacteria | 5390363 |
| 248 | 2919435806 | 2919432681 | Bacteria | 5390474 |
| 249 | 2928144674 | 2928142448 | Bacteria | 5288925 |
| 250 | 2990059563 | 2990059506 | Bacteria | 9321252 |
| 251 | 3006395375 | 3006393351 | Bacteria | 6615579 |
| 252 | 8023625038 | 8023623736 | Bacteria | 8593882 |
| 253 | 8047717187 | 8047710418 | Bacteria | 11023148 |
| 254 | 8048408177 | 8048406513 | Bacteria | 8936924 |
| 255 | 8053947928 | 8053945823 | Bacteria | 8962862 |
| 256 | 8057348787 | 8057345674 | Bacteria | 4160394 |
| 257 | Ga0070683_100031855 | |||
| 258 | JGI24737J22298_10041713 | |||
| 259 | rootH1_10157770 | |||
| 260 | Ga0070683_100362422 | |||
| 261 | Ga0070660_100150331 | |||
| 262 | Ga0070661_100526141 | |||
| 263 | Ga0070692_10213325 | |||
| 264 | Ga0070668_100095699 | |||
| 265 | Ga0070667_100411822 | |||
| 266 | Ga0070709_10000283 | |||
| 267 | Ga0070714_100000403 | |||
| 268 | Ga0070714_100016995 | |||
| 269 | Ga0070714_100134542 | |||
| 270 | Ga0070714_100135911 | |||
| 271 | Ga0070714_100227232 | |||
| 272 | Ga0070713_100000848 | |||
| 273 | Ga0070713_100003915 | |||
| 274 | Ga0070713_100154084 | |||
| 275 | Ga0070713_100280413 | |||
| 276 | Ga0070710_10000160 | |||
| 277 | Ga0070710_10028935 | |||
| 278 | Ga0070701_10214376 | |||
| 279 | Ga0070711_100000349 | |||
| 280 | Ga0070711_100034276 | |||
| 281 | Ga0070705_100033621 | |||
| 282 | Ga0070663_100000109 | |||
| 283 | Ga0070663_100012860 | |||
| 284 | Ga0070663_100345689 | |||
| 285 | Ga0070678_100368326 | |||
| 286 | Ga0070681_10293109 | |||
| 287 | Ga0070707_100573416 | |||
| 288 | Ga0070698_100016867 | |||
| 289 | Ga0070679_100169922 | |||
| 290 | Ga0070696_100500139 | |||
| 291 | Ga0070665_100439338 | |||
| 292 | Ga0068855_100047634 | |||
| 293 | Ga0068855_100212019 | |||
| 294 | Ga0068857_100037243 | |||
| 295 | Ga0068857_100107654 | |||
| 296 | Ga0068856_100035347 | |||
| 297 | Ga0068856_100077041 | |||
| 298 | Ga0068856_100254772 | |||
| 299 | Ga0068856_100460882 | |||
| 300 | Ga0068852_100582802 | |||
| 301 | Ga0068859_100043622 | |||
| 302 | Ga0068864_100022127 | |||
| 303 | Ga0068863_100022644 | |||
| 304 | Ga0081455_10018932 | |||
| 305 | Ga0081539_10171880 | |||
| 306 | Ga0081539_10176637 | |||
| 307 | Ga0070717_10001151 | |||
| 308 | Ga0070717_10002215 | |||
| 309 | Ga0070717_11258624 | |||
| 310 | Ga0070716_100000732 | |||
| 311 | Ga0070716_100042110 | |||
| 312 | Ga0070712_100434529 | |||
| 313 | Ga0070712_100656484 | |||
| 314 | Ga0097621_100113853 | |||
| 315 | Ga0068871_100023618 | |||
| 316 | Ga0097620_100043623 | |||
| 317 | Ga0105251_10285678 | |||
| 318 | Ga0105240_10744405 | |||
| 319 | Ga0105245_10027254 | |||
| 320 | Ga0105247_10090540 | |||
| 321 | Ga0105248_10052347 | |||
| 322 | Ga0105238_10215163 | |||
| 323 | Ga0105238_10717130 | |||
| 324 | Ga0105239_10605026 | |||
| 325 | Ga0157370_10011686 | |||
| 326 | Ga0157369_10112318 | |||
| 327 | Ga0157369_10254469 | |||
| 328 | Ga0157374_10047922 | |||
| 329 | Ga0157372_11835782 | |||
| 330 | Ga0157375_10251197 | |||
| 331 | Ga0163163_10031291 | |||
| 332 | Ga0163163_10060063 | |||
| 333 | Ga0157380_10301790 | |||
| 334 | Ga0157379_10033961 | |||
| 335 | Ga0157379_10184280 | |||
| 336 | Ga0157376_10005937 | |||
| 337 | Ga0206354_11708317 | |||
| 338 | Ga0206353_11658740 | |||
| 339 | Ga0206353_11961286 | |||
| 340 | Ga0207426_1031575 | |||
| 341 | Ga0207692_10000102 | |||
| 342 | Ga0207688_10346583 | |||
| 343 | Ga0207647_10001976 | |||
| 344 | Ga0207647_10091841 | |||
| 345 | Ga0207699_10000332 | |||
| 346 | Ga0207705_10187168 | |||
| 347 | Ga0207693_10038281 | |||
| 348 | Ga0207663_10000446 | |||
| 349 | Ga0207660_10048322 | |||
| 350 | Ga0207657_10254939 | |||
| 351 | Ga0207649_10445395 | |||
| 352 | Ga0207652_10013547 | |||
| 353 | Ga0207694_10193502 | |||
| 354 | Ga0207694_10580517 | |||
| 355 | Ga0207700_10000139 | |||
| 356 | Ga0207700_10010376 | |||
| 357 | Ga0207700_10143052 | |||
| 358 | Ga0207664_10000108 | |||
| 359 | Ga0207664_10010080 | |||
| 360 | Ga0207664_10449114 | |||
| 361 | Ga0207665_10000753 | |||
| 362 | Ga0207667_10011083 | |||
| 363 | Ga0207712_10219118 | |||
| 364 | Ga0207668_10005864 | |||
| 365 | Ga0207668_10375396 | |||
| 366 | Ga0207668_10851643 | |||
| 367 | Ga0207658_10261881 | |||
| 368 | Ga0207678_10001736 | |||
| 369 | Ga0207678_10028744 | |||
| 370 | Ga0207678_10363534 | |||
| 371 | Ga0207702_10387476 | |||
| 372 | Ga0207702_10755525 | |||
| 373 | Ga0207641_10009614 | |||
| 374 | Ga0207641_10414543 | |||
| 375 | Ga0207676_10168272 | |||
| 376 | Ga0207674_10065253 | |||
| 377 | Ga0207674_10124027 | |||
| 378 | Ga0207674_10158830 | |||
| 379 | Ga0207683_11131407 | |||
| 380 | Ga0207698_10525998 | |||
| 381 | Ga0268266_10080910 | |||
| 382 | Ga0268266_10616177 | |||
| 383 | Ga0268266_10835500 | |||
| 384 | Ga0268264_11266540 | |||
| 385 | Ga0307512_10105358 | |||
| 386 | Ga0307512_10228032 | |||
| 387 | Ga0265339_10081310 | |||
| 388 | Ga0265316_10072265 | |||
| 389 | Ga0316575_10000003 | |||
| 390 | Ga0265342_10028877 | |||
| 391 | Ga0307409_100033155 | |||
| 392 | Ga0307415_100115383 | |||
| 393 | Ga0307510_10039944 | |||
| 394 | Ga0373951_0133828 | |||
| 395 | Ga0373956_0066191 | |||
| 396 | Ga0373935_0140277 | |||
| 397 | Ga0373937_0455112 | |||
| 398 | Ga0400485_10266 | |||
| 399 | Ga0400486_11169 | |||
| 400 | Ga0466965_0179534 | |||
| 401 | Ga0466963_0035160 | |||
| 402 | Ga0466968_0018247 | |||
| 403 | Ga0466967_0001565 | |||
| 404 | Ga0466967_0079972 | |||
| 405 | Ga0466967_0727041 | |||
| 406 | Ga0495592_0021033 | |||
| 407 | Ga0495629_0027734 | |||
| 408 | Ga0495629_0219049 | |||
| 409 | Ga0495641_0047556 | |||
| 410 | Ga0495651_0004594 | |||
| 411 | Ga0495580_0207231 | |||
| 412 | Ga0495639_0093101 | |||
| 413 | Ga0495662_0019492 | |||
| 414 | Ga0495664_0197723 | |||
| 415 | Ga0495608_0015163 | |||
| 416 | Ga0495618_0185305 | |||
| 417 | Ga0495628_0034038 | |||
| 418 | Ga0495630_0213837 | |||
| 419 | Ga0495666_0270730 | |||
| 420 | Ga0495652_0013525 | |||
| 421 | Ga0495665_0065488 | |||
| 422 | Ga0495640_0047330 | |||
| 423 | Ga0495587_0135578 | |||
| 424 | Ga0495645_0005787 | |||
| 425 | Ga0495667_0008358 | |||
| 426 | Ga0495634_0016843 | |||
| 427 | Ga0495635_0376122 | |||
| 428 | Ga0495657_0034487 | |||
| 429 | Ga0495599_0007185 | |||
| 430 | Ga0495623_0015231 | |||
| 431 | Ga0495646_0060381 | |||
| 432 | Ga0495647_0055854 | |||
| 433 | Ga0495658_0378180 | |||
| 434 | Ga0495613_0000407 | |||
| 435 | Ga0495613_0040521 | |||
| 436 | Ga0495624_0426297 | |||
| 437 | Ga0495600_0010023 | |||
| 438 | Ga0495604_0007597 | |||
| 439 | Ga0495674_0138415 | |||
| 440 | Ga0495676_0012092 | |||
| 441 | Ga0495676_0111023 | |||
| 442 | Ga0495680_0038809 | |||
| 443 | Ga0495593_0182427 | |||
| 444 | Ga0495602_0017236 | |||
| 445 | Ga0495614_0000149 | |||
| 446 | Ga0496105_0373845 | |||
| 447 | Ga0496108_0228478 | |||
| 448 | Ga0496108_0379311 | |||
| 449 | Ga0496109_0683744 | |||
| 450 | Ga0496110_0054960 | |||
| 451 | Ga0496110_1362389 | |||
| 452 | Ga0496117_0000128 | |||
| 453 | Ga0496117_0379536 | |||
| 454 | Ga0501033_0319115 | |||
| 455 | Ga0501034_0028841 | |||
| 456 | Ga0501034_0618393 | |||
| 457 | Ga0501034_0808501 | |||
| 458 | Ga0501036_0001444 | |||
| 459 | Ga0501037_0071961 | |||
| 460 | Ga0501038_0079485 | |||
| 461 | Ga0501038_0193751 | |||
| 462 | Ga0501038_0468836 | |||
| 463 | Ga0501039_0033419 | |||
| 464 | Ga0501043_0033419 | |||
| 465 | Ga0501043_0141087 | |||
| 466 | Ga0501043_0255989 | |||
| 467 | Ga0501047_0000734 | |||
| 468 | Ga0501047_0076501 | |||
| 469 | Ga0501047_0397501 | |||
| 470 | Ga0501048_0465924 | |||
| 471 | Ga0501070_0001065 | |||
| 472 | Ga0501070_0189795 | |||
| 473 | Ga0501074_0028638 | |||
| 474 | Ga0501074_0168096 | |||
| 475 | Ga0501080_0558766 | |||
| 476 | Ga0501035_0003800 | |||
| 477 | Ga0501035_0006714 | |||
| 478 | Ga0501035_0014381 | |||
| 479 | Ga0501035_0096303 | |||
| 480 | Ga0501044_0026219 | |||
| 481 | Ga0501044_0082562 | |||
| 482 | Ga0501044_0191511 | |||
| 483 | Ga0501044_0348764 | |||
| 484 | Ga0501044_0463914 | |||
| 485 | Ga0501044_0555269 | |||
| 486 | Ga0495601_0084366 | |||
| 487 | Ga0495619_0010974 | |||
| 488 | Ga0495619_0274219 | |||
| 489 | Ga0500559_0225095 | |||
| 490 | 2515851086 | |||
| 491 | 2644199226 | |||
| 492 | 2809589206 | |||
| 493 | 2816510527 | |||
| 494 | 2827630907 | |||
| 495 | 2863068295 | |||
| 496 | 2866614414 | |||
| 497 | 2867478180 | |||
| 498 | 2899376658 | |||
| 499 | 2904769835 | |||
| 500 | 2904771306 | |||
| 501 | 2908816117 | |||
| 502 | 2915771496 | |||
| 503 | 2919423198 | |||
| 504 | 2919435806 | |||
| 505 | 2928144674 | |||
| 506 | 2990059563 | |||
| 507 | 3006395375 | |||
| 508 | 8023625038 | |||
| 509 | 8047717187 | |||
| 510 | 8048408177 | |||
| 511 | 8053947928 | |||
| 512 | 8057348787 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6lw3-assembly1.cif.gz_B | crystal structure of ruvc from pseudomonas aeruginosa | 0.9508 | 2 | 151 |
| 7xhj-assembly1.cif.gz_A | crystal structure of ruvc from deinococcus radiodurans | 0.9496 | 1 | 153 |
| 1hjr-assembly2.cif.gz_D | atomic structure of the ruvc resolvase: a holliday junction-specific endonuclease from e. coli | 0.9445 | 1 | 152 |
| 6s16-assembly1.cif.gz_B | t. thermophilus ruvc in complex with holliday junction substrate | 0.9436 | 1 | 159 |
| 6s16-assembly1.cif.gz_A | t. thermophilus ruvc in complex with holliday junction substrate | 0.9384 | 1 | 159 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WGV9_1_161_3.30.420.10 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.9839 | 1 | 160 | 3.30.420.10 |
| af_P9WGV9_1_161_3.30.420.10 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.9719 | 1 | 160 | 3.30.420.10 |
| 4ld0B00 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.9377 | 1 | 152 | 3.30.420.10 |
| 1hjrC00 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.9221 | 1 | 153 | 3.30.420.10 |
| 1hjrC00 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.8832 | 1 | 153 | 3.30.420.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5C4ME40-F1-model_v4 | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) (Holliday junction nuclease RuvC) (Holliday junction resolvase RuvC) | 0.9952 | 1 | 171 |
GO:0000287
GO:0003677 GO:0005737 GO:0006281 GO:0006310 GO:0008821 GO:0048476 |
| AF-A0A7Y6FRF6-F1-model_v4 | deleted | 0.9941 | 1 | 155 |
|
| AF-A0A7J9XZK3-F1-model_v4 | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) (Holliday junction nuclease RuvC) (Holliday junction resolvase RuvC) | 0.9889 | 1 | 177 |
GO:0000287
GO:0003677 GO:0005737 GO:0006281 GO:0006310 GO:0008821 GO:0048476 |
| AF-A0A6A8N2Q6-F1-model_v4 | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) (Holliday junction nuclease RuvC) (Holliday junction resolvase RuvC) | 0.988 | 1 | 155 |
GO:0000287
GO:0003677 GO:0005737 GO:0006281 GO:0006310 GO:0008821 GO:0048476 |
| AF-A0A3N2C2X0-F1-model_v4 | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) (Holliday junction nuclease RuvC) (Holliday junction resolvase RuvC) | 0.9866 | 1 | 154 |
GO:0000287
GO:0003677 GO:0005737 GO:0006281 GO:0006310 GO:0008821 GO:0048476 |