F364177

General Info

Members Datasets Scaffolds Average Seq Length
253 183 224 692

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10041677|Ga0307508_100416772
Length 715
Sequence MFVTVEVKKDILWRVYLGFIGMVVLSVLVLGRAVYIQQFQGHYWRSKSDSMHTRLMPLQADRGTIYSEDGNMLSMSVPYFDIYVDFGADGLREKDGKRFKDCVDSLSHSLAVFFGDKKWQDYKKELQAGYRKKDRYYELRKNLTFAEYKTLRTFPLVNQGRNKSGFIAEVKSKRLNPFGLLANRTIGLSRAYLNNEGKTVSQNVGLEKTYDSLLKGVSGQRLVRFISGGAFVPVEGSETDPENGRDIITTLDVNTQDIAENALLKAMLENEADHGTCIVMEVATGKIKALANLGRRSDGSYWEDYNYALRSTEPGSTIKLATLLSVLSEGKTTINDRVEVGATGNQYVGVRMVTEAEVMPTPVMTVKECFAHSSNVGMSKLAYQSFASQPDKFLSYLHRYHFDSKTGIDLIGEESPVLPKIKRNKEGMHAMVTMSFGYAIEVTPLQTLMLYNAIANDGKMMKPYLVNRLQSNGQTVKEFEPEVLEEKIAREDVIKAVRSCMLSVTTEGTSKKVFRTALYSSGGKTGTAHVAGKDVNYDDGIYQASYAGFFPFDKPQYSCIVVVKTKSHPAKHMGGEVSAPVFREIADKLYALNVQPAAGQLAGLKKDSSLFYWAGETGAVKQVLNTLNVAFVDSAGSQRWSSIYGSNGGKPVVSDRVVTQRVMPDVKGMGLKDALYLLESMKLKVIARGKGRVVSQSIEAGKQVEKGATVIIELS

Samples

Sample ID Description Type Environment
1 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
2 2738541302 Pedobacter sp. CF074 Isolate Unclassified
3 2739367651 Pedobacter sp. OK291 Isolate Unclassified
4 2739367656 Pedobacter sp. CF523 Isolate Unclassified
5 2739367663 Pedobacter sp. YR510 Isolate Unclassified
6 2818991437 Pedobacter terrae 518 Isolate Unclassified
7 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
8 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
9 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
10 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
11 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
12 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
13 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
14 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
15 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
16 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
17 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
18 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
19 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
20 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
21 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
22 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
23 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
24 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
25 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
26 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
27 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
28 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
29 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
30 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
31 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
32 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
33 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
34 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
35 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
36 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
37 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
38 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
39 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
40 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
41 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
42 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
43 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
44 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
45 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
46 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
47 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
48 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
49 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
50 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
51 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
52 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
53 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
54 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
55 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
56 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
57 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
58 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
59 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
60 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
61 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
62 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
63 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
64 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
65 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
66 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
67 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
68 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
69 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
70 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
71 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
72 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
73 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
74 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
75 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
76 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
77 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
78 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
79 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
80 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
81 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
82 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
83 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
84 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
85 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
86 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
87 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
88 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
89 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
90 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
91 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
92 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
93 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
94 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
95 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
97 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
98 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
99 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
101 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
102 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
103 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
104 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
105 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
106 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
107 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
108 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
109 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
127 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
129 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
130 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
131 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
132 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
133 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
134 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
135 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
136 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
137 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
138 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
139 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
140 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
141 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
142 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
143 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
144 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
145 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
146 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
147 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
148 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
149 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
150 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
151 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
152 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
161 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
162 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
163 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
164 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
165 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
167 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
168 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
169 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
170 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
171 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
172 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
173 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
174 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
175 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
176 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
177 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
178 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
179 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
180 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
181 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
182 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
183 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.54
Metatranscriptomes 0
Isolates 11.46

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.76
Nodule 0
Rhizoplane 0
Rhizosphere 67.59
Stem 0
Stem Tuber 0
Unclassified 12.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10002431 3300001979 Bacteria 8454
2 JGI24751J29686_10001652 3300002459 Bacteria 4590
3 JGI25154J39366_1000020 3300002738 Bacteria 233181
4 JGI25152J39213_1000034 3300002773 Bacteria 94987
5 JGI25150J39212_1000001 3300002774 Bacteria 1318726
6 JGI25151J46595_10000001 3300003187 Bacteria 887211
7 JGI25153J46596_10000001 3300003215 Bacteria 748985
8 JGI25153J46596_10005327 3300003215 Bacteria 6761
9 JGI25153J46596_10007424 3300003215 Bacteria 5395
10 rootH2_10002710 3300003320 Bacteria 13202
11 rootH2_10061312 3300003320 Bacteria 8067
12 rootH1_10006910 3300003323 Bacteria 7319
13 rootH1_10030614 3300003323 Bacteria 6585
14 JGI25160J50197_1003022 3300003354 Bacteria 7664
15 Ga0055542_1002787 3300003762 Bacteria 5276
16 Ga0055536_1000024 3300003781 Bacteria 185534
17 Ga0055528_1000463 3300003790 Bacteria 32439
18 Ga0055530_10000261 3300003791 Bacteria 47614
19 Ga0055531_10000132 3300003794 Bacteria 85251
20 Ga0065165_1000148 3300005262 Bacteria 122640
21 Ga0065714_10065033 3300005288 Bacteria 13724
22 Ga0065704_10075278 3300005289 Bacteria 5683
23 Ga0070670_100019241 3300005331 Bacteria 5856
24 Ga0070666_10000031 3300005335 Bacteria 132089
25 Ga0070666_10021471 3300005335 Bacteria 4186
26 Ga0070666_10059644 3300005335 Bacteria 2581
27 Ga0068868_100015763 3300005338 Bacteria 5598
28 Ga0070669_100080268 3300005353 Bacteria 2428
29 Ga0070675_100001598 3300005354 Bacteria 16707
30 Ga0070675_100030270 3300005354 Bacteria 4369
31 Ga0070671_100025704 3300005355 Bacteria 4833
32 Ga0070673_100002785 3300005364 Bacteria 10751
33 Ga0070688_100000309 3300005365 Bacteria 24809
34 Ga0070667_100015842 3300005367 Bacteria 6236
35 Ga0068867_100012848 3300005459 Bacteria 5926
36 Ga0070665_100000018 3300005548 Bacteria 434118
37 Ga0070665_100004490 3300005548 Bacteria 14648
38 Ga0068857_100013591 3300005577 Bacteria 7092
39 Ga0068852_100004741 3300005616 Bacteria 9653
40 Ga0068859_100000588 3300005617 Bacteria 36240
41 Ga0068859_100005195 3300005617 Bacteria 13229
42 Ga0068859_100016142 3300005617 Bacteria 7500
43 Ga0068859_100050396 3300005617 Bacteria 4182
44 Ga0068864_100001622 3300005618 Bacteria 18523
45 Ga0068864_100015824 3300005618 Bacteria 6277
46 Ga0068866_10019487 3300005718 Bacteria 3090
47 Ga0068861_100013992 3300005719 Bacteria 5625
48 Ga0068863_100005325 3300005841 Bacteria 12693
49 Ga0068863_100007387 3300005841 Bacteria 10755
50 Ga0068858_100006593 3300005842 Bacteria 11293
51 Ga0068860_100000252 3300005843 Bacteria 79891
52 Ga0068860_100005282 3300005843 Bacteria 13106
53 Ga0068860_100007096 3300005843 Bacteria 11208
54 Ga0068860_100020414 3300005843 Bacteria 6417
55 Ga0068862_100006483 3300005844 Bacteria 9717
56 Ga0075366_10000655 3300006195 Bacteria 16301
57 Ga0075366_10012919 3300006195 Bacteria 4747
58 Ga0068871_100040621 3300006358 Bacteria 3727
59 Ga0097620_100000588 3300006931 Bacteria 36240
60 Ga0097620_100005195 3300006931 Bacteria 13229
61 Ga0097620_100016141 3300006931 Bacteria 7500
62 Ga0097620_100050396 3300006931 Bacteria 4182
63 Ga0105240_10001675 3300009093 Bacteria 37595
64 Ga0105247_10003687 3300009101 Bacteria 9940
65 Ga0105241_10001060 3300009174 Bacteria 20957
66 Ga0105242_10011078 3300009176 Bacteria 6928
67 Ga0105242_10043761 3300009176 Bacteria 3623
68 Ga0105237_10002600 3300009545 Bacteria 22265
69 Ga0105237_10004641 3300009545 Bacteria 15835
70 Ga0105237_10020613 3300009545 Bacteria 6792
71 Ga0105237_10023547 3300009545 Bacteria 6308
72 Ga0105238_10003096 3300009551 Bacteria 16583
73 Ga0105249_10003587 3300009553 Bacteria 13426
74 Ga0105249_10005487 3300009553 Bacteria 10956
75 Ga0105249_10012120 3300009553 Bacteria 7589
76 Ga0157371_10000172 3300013102 Bacteria 94447
77 Ga0157370_10000531 3300013104 Bacteria 47724
78 Ga0157369_10001883 3300013105 Bacteria 25308
79 Ga0157374_10036685 3300013296 Bacteria 4492
80 Ga0157378_10018020 3300013297 Bacteria 6199
81 Ga0157378_10021784 3300013297 Bacteria 5636
82 Ga0157378_10107688 3300013297 Bacteria 2551
83 Ga0163162_10000410 3300013306 Bacteria 39376
84 Ga0163162_10000558 3300013306 Bacteria 34481
85 Ga0163162_10001090 3300013306 Bacteria 25165
86 Ga0157375_10032626 3300013308 Bacteria 4940
87 Ga0157375_10047150 3300013308 Bacteria 4206
88 Ga0163163_10043909 3300014325 Bacteria 4384
89 Ga0157380_10000709 3300014326 Bacteria 20825
90 Ga0157379_10099695 3300014968 Bacteria 2608
91 Ga0157376_10010548 3300014969 Bacteria 6765
92 Ga0157376_10018465 3300014969 Bacteria 5348
93 Ga0182006_1000180 3300015261 Bacteria 66625
94 Ga0182006_1011700 3300015261 Bacteria 3855
95 Ga0182007_10000033 3300015262 Bacteria 139808
96 Ga0182005_1000209 3300015265 Bacteria 38801
97 Ga0183373_1001 3300015682 Bacteria 1410374
98 Ga0163161_10011757 3300017792 Bacteria 6070
99 Ga0163161_10013646 3300017792 Bacteria 5657
100 Ga0163161_10061103 3300017792 Bacteria 2743
101 Ga0209436_100345 3300025208 Bacteria 20982
102 Ga0209258_100075 3300025242 Bacteria 270751
103 Ga0207425_1000002 3300025245 Bacteria 1362590
104 Ga0209646_1000005 3300025246 Bacteria 717627
105 Ga0209026_1000198 3300025250 Bacteria 83656
106 Ga0209148_1000085 3300025254 Bacteria 265193
107 Ga0209129_1000002 3300025258 Bacteria 1359086
108 Ga0209673_1000543 3300025273 Bacteria 61360
109 Ga0209130_1002429 3300025284 Bacteria 9362
110 Ga0209676_1000008 3300025292 Bacteria 991778
111 Ga0209025_1000004 3300025294 Bacteria 1361782
112 Ga0209758_1000006 3300025297 Bacteria 1359562
113 Ga0209758_1004190 3300025297 Bacteria 12246
114 Ga0209050_1000055 3300025298 Bacteria 339254
115 Ga0209050_1000359 3300025298 Bacteria 87723
116 Ga0207426_1000057 3300025302 Bacteria 369548
117 Ga0207426_1000752 3300025302 Bacteria 36280
118 Ga0207426_1000888 3300025302 Bacteria 30602
119 Ga0207426_1003364 3300025302 Bacteria 8776
120 Ga0209257_1000004 3300025304 Bacteria 1678347
121 Ga0209257_1004378 3300025304 Bacteria 10987
122 Ga0207682_10005441 3300025893 Bacteria 5181
123 Ga0207710_10001739 3300025900 Bacteria 10530
124 Ga0207680_10000419 3300025903 Bacteria 20197
125 Ga0207680_10016678 3300025903 Bacteria 3862
126 Ga0207645_10050813 3300025907 Unclassified 2648
127 Ga0207654_10000690 3300025911 Bacteria 18790
128 Ga0207695_10020171 3300025913 Bacteria 7642
129 Ga0207671_10005382 3300025914 Bacteria 11823
130 Ga0207681_10008586 3300025923 Bacteria 6240
131 Ga0207694_10018008 3300025924 Bacteria 5339
132 Ga0207706_10024591 3300025933 Bacteria 5399
133 Ga0207689_10003942 3300025942 Bacteria 13506
134 Ga0207689_10012811 3300025942 Bacteria 7161
135 Ga0207689_10014315 3300025942 Bacteria 6751
136 Ga0207689_10018699 3300025942 Bacteria 5843
137 Ga0207651_10005521 3300025960 Bacteria 6506
138 Ga0207712_10001306 3300025961 Bacteria 17074
139 Ga0207712_10005535 3300025961 Bacteria 7968
140 Ga0207712_10037918 3300025961 Unclassified 3292
141 Ga0207658_10000794 3300025986 Bacteria 26621
142 Ga0207677_10008508 3300026023 Bacteria 5737
143 Ga0207703_10023138 3300026035 Bacteria 4879
144 Ga0207641_10000133 3300026088 Bacteria 109199
145 Ga0207641_10022129 3300026088 Bacteria 5231
146 Ga0207648_10002096 3300026089 Bacteria 21725
147 Ga0207648_10002577 3300026089 Bacteria 19412
148 Ga0207676_10005033 3300026095 Bacteria 9352
149 Ga0207674_10007001 3300026116 Bacteria 13181
150 Ga0207674_10087308 3300026116 Bacteria 3113
151 Ga0207675_100040769 3300026118 Bacteria 4337
152 Ga0207683_10003613 3300026121 Bacteria 13478
153 Ga0207683_10078659 3300026121 Bacteria 2923
154 Ga0207428_10010479 3300027907 Bacteria 8274
155 Ga0268266_10000026 3300028379 Bacteria 434485
156 Ga0268265_10036878 3300028380 Bacteria 3584
157 Ga0268264_10000015 3300028381 Bacteria 508501
158 Ga0268264_10000019 3300028381 Bacteria 488112
159 Ga0268264_10000054 3300028381 Bacteria 317048
160 Ga0268264_10001076 3300028381 Bacteria 27049
161 Ga0268264_10001568 3300028381 Bacteria 21208
162 Ga0268264_10011903 3300028381 Bacteria 7166
163 Ga0268264_10030741 3300028381 Bacteria 4401
164 Ga0307515_10000024 3300028794 Bacteria 393119
165 Ga0307511_10000228 3300030521 Bacteria 57237
166 Ga0265327_10007772 3300031251 Bacteria 8183
167 Ga0307509_10060943 3300031507 Bacteria 3986
168 Ga0307508_10041677 3300031616 Bacteria 4120
169 Ga0307405_10000003 3300031731 Bacteria 569064
170 Ga0307407_10000010 3300031903 Bacteria 186970
171 Ga0307416_100000014 3300032002 Bacteria 249053
172 Ga0439431_0001257 3300041997 Bacteria 5557
173 Ga0466972_0000032 3300044658 Bacteria 159445
174 Ga0466972_0000500 3300044658 Bacteria 19594
175 Ga0466972_0013277 3300044658 Bacteria 4135
176 Ga0466972_0023645 3300044658 Bacteria 3054
177 Ga0495610_0000051 3300046512 Bacteria 143715
178 Ga0495648_0001530 3300046524 Bacteria 22622
179 Ga0495633_0000022 3300046558 Bacteria 226582
180 Ga0495672_0010362 3300047320 Bacteria 6651
181 Ga0495687_000031 3300047443 Bacteria 274659
182 Ga0496121_0000010 3300048924 Bacteria 793488
183 Ga0496126_0015825 3300048929 Bacteria 7574
184 Ga0501031_0003639 3300049568 Bacteria 9917
185 Ga0501034_0001624 3300049571 Bacteria 29165
186 Ga0501034_0130323 3300049571 Bacteria 2498
187 Ga0501036_0000569 3300049572 Bacteria 26504
188 Ga0501037_0014620 3300049573 Bacteria 5776
189 Ga0501037_0015219 3300049573 Bacteria 5660
190 Ga0501038_0038713 3300049574 Bacteria 4174
191 Ga0501043_0002227 3300049579 Bacteria 16523
192 Ga0501043_0025718 3300049579 Bacteria 4618
193 Ga0501047_0003998 3300049581 Bacteria 13855
194 Ga0501047_0080613 3300049581 Bacteria 3128
195 Ga0501048_0009909 3300049582 Bacteria 7140
196 Ga0501068_0016176 3300049584 Bacteria 4298
197 Ga0501219_000067 3300049703 Bacteria 17563
198 Ga0501080_0023312 3300049742 Bacteria 5738
199 Ga0501083_0027862 3300049744 Bacteria 3896
200 Ga0501241_000891 3300049758 Bacteria 6337
201 Ga0501035_0033128 3300049822 Bacteria 4699
202 Ga0501035_0064539 3300049822 Bacteria 3254
203 Ga0501044_0023517 3300049823 Bacteria 6555
204 Ga0501044_0052022 3300049823 Bacteria 4223
205 Ga0501044_0111590 3300049823 Bacteria 2742
206 Ga0501044_0115353 3300049823 Unclassified 2691
207 Ga0501284_00015 3300050005 Bacteria 104438
208 nmdc:mga08y16_32030_c1 3300050511 Bacteria 5529
209 Ga0500578_0000001 3300053086 Bacteria 317120
210 Ga0500644_0000078 3300053088 Bacteria 59447
211 Ga0500651_0033635 3300053093 Bacteria 3232
212 Ga0500562_000015 3300053108 Bacteria 143120
213 Ga0500569_002319 3300053109 Bacteria 3731
214 Ga0500642_0018811 3300053130 Bacteria 2680
215 Ga0500559_0004098 3300053136 Bacteria 6990
216 Ga0500568_0000511 3300053139 Bacteria 28633
217 Ga0500577_0000530 3300053142 Bacteria 9855
218 Ga0500590_020150 3300053148 Bacteria 3460
219 Ga0500616_0005256 3300053153 Bacteria 8851
220 Ga0500616_0012757 3300053153 Bacteria 4906
221 Ga0500622_0002163 3300053156 Bacteria 14559
222 Ga0500622_0011208 3300053156 Bacteria 4892
223 Ga0500636_0004061 3300053177 Bacteria 8263
224 Ga0500611_000021 3300053727 Bacteria 102395

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049571 Ga0501034_0130323 Ga0501034_0130323_25_1830 591
2 3300053088 Ga0500644_0000078 Ga0500644_0000078_57482_59386 633
3 3300026116 Ga0207674_10087308 Ga0207674_100873082 634
4 3300028381 Ga0268264_10030741 Ga0268264_100307413 634
5 3300005338 Ga0068868_100015763 Ga0068868_1000157634 636
6 3300005841 Ga0068863_100005325 Ga0068863_1000053257 636
7 3300005331 Ga0070670_100019241 Ga0070670_1000192414 638
8 3300005354 Ga0070675_100030270 Ga0070675_1000302703 638
9 3300005548 Ga0070665_100004490 Ga0070665_1000044902 638
10 3300025942 Ga0207689_10003942 Ga0207689_1000394210 638
11 3300026089 Ga0207648_10002096 Ga0207648_1000209619 638
12 3300013296 Ga0157374_10036685 Ga0157374_100366853 642
13 3300014968 Ga0157379_10099695 Ga0157379_100996952 642
14 3300014969 Ga0157376_10010548 Ga0157376_100105482 642
15 3300031251 Ga0265327_10007772 Ga0265327_100077724 647
16 3300049571 Ga0501034_0001624 Ga0501034_0001624_16942_18921 656
17 3300049572 Ga0501036_0000569 Ga0501036_0000569_17707_19686 656
18 3300049573 Ga0501037_0014620 Ga0501037_0014620_2689_4668 656
19 3300049574 Ga0501038_0038713 Ga0501038_0038713_1042_3021 656
20 3300049579 Ga0501043_0002227 Ga0501043_0002227_12347_14326 656
21 3300049581 Ga0501047_0003998 Ga0501047_0003998_1434_3413 656
22 3300049582 Ga0501048_0009909 Ga0501048_0009909_1629_3608 656
23 3300049584 Ga0501068_0016176 Ga0501068_0016176_996_2975 656
24 3300049742 Ga0501080_0023312 Ga0501080_0023312_1753_3732 656
25 3300049744 Ga0501083_0027862 Ga0501083_0027862_668_2647 656
26 3300049822 Ga0501035_0064539 Ga0501035_0064539_444_2423 656
27 3300049823 Ga0501044_0023517 Ga0501044_0023517_3785_5764 656
28 3300053139 Ga0500568_0000511 Ga0500568_0000511_24807_26885 656
29 3300053727 Ga0500611_000021 Ga0500611_000021_4696_6861 660
30 3300009176 Ga0105242_10043761 Ga0105242_100437612 661
31 3300015265 Ga0182005_1000209 Ga0182005_10002099 661
32 3300044658 Ga0466972_0000032 Ga0466972_0000032_114463_116550 663
33 3300009176 Ga0105242_10011078 Ga0105242_100110782 669
34 3300025302 Ga0207426_1003364 Ga0207426_10033647 669
35 3300003323 rootH1_10006910 rootH1_100069108 670
36 3300005843 Ga0068860_100020414 Ga0068860_1000204143 670
37 3300025893 Ga0207682_10005441 Ga0207682_100054413 670
38 3300026023 Ga0207677_10008508 Ga0207677_100085082 670
39 3300026121 Ga0207683_10078659 Ga0207683_100786592 670
40 3300053156 Ga0500622_0002163 Ga0500622_0002163_12508_14523 670
41 3300013297 Ga0157378_10021784 Ga0157378_100217842 671
42 3300013308 Ga0157375_10032626 Ga0157375_100326265 671
43 3300026088 Ga0207641_10022129 Ga0207641_100221293 671
44 3300044658 Ga0466972_0023645 Ga0466972_0023645_837_2924 671
45 3300025961 Ga0207712_10005535 Ga0207712_100055353 673
46 3300028794 Ga0307515_10000024 Ga0307515_10000024175 673
47 3300049823 Ga0501044_0052022 Ga0501044_0052022_1306_3360 674
48 3300048924 Ga0496121_0000010 Ga0496121_0000010_232447_234552 675
49 3300013308 Ga0157375_10047150 Ga0157375_100471505 676
50 3300003320 rootH2_10061312 rootH2_100613124 677
51 3300005353 Ga0070669_100080268 Ga0070669_1000802681 678
52 3300005459 Ga0068867_100012848 Ga0068867_1000128483 678
53 3300025942 Ga0207689_10018699 Ga0207689_100186992 678
54 3300026089 Ga0207648_10002577 Ga0207648_1000257712 678
55 3300025942 Ga0207689_10014315 Ga0207689_100143156 679
56 iso_pu_bacteria 2896109856 2896114702 679
57 3300003762 Ga0055542_1002787 Ga0055542_10027876 680
58 3300025242 Ga0209258_100075 Ga0209258_100075124 680
59 3300025254 Ga0209148_1000085 Ga0209148_1000085105 680
60 3300053108 Ga0500562_000015 Ga0500562_000015_106292_108433 680
61 3300009553 Ga0105249_10012120 Ga0105249_100121202 681
62 3300014326 Ga0157380_10000709 Ga0157380_100007097 681
63 3300049823 Ga0501044_0111590 Ga0501044_0111590_428_2488 681
64 3300050511 nmdc:mga08y16_32030_c1 nmdc:mga08y16_32030_c1_2570_4648 681
65 3300047320 Ga0495672_0010362 Ga0495672_0010362_1298_3379 682
66 3300053086 Ga0500578_0000001 Ga0500578_0000001_272167_274290 682
67 3300006358 Ga0068871_100040621 Ga0068871_1000406212 683
68 3300014969 Ga0157376_10018465 Ga0157376_100184653 683
69 3300044658 Ga0466972_0013277 Ga0466972_0013277_1286_3340 683
70 3300053109 Ga0500569_002319 Ga0500569_002319_977_3031 683
71 3300053136 Ga0500559_0004098 Ga0500559_0004098_881_2935 683
72 3300053142 Ga0500577_0000530 Ga0500577_0000530_3120_5174 683
73 3300053148 Ga0500590_020150 Ga0500590_020150_1138_3192 683
74 3300053153 Ga0500616_0012757 Ga0500616_0012757_145_2199 683
75 3300053177 Ga0500636_0004061 Ga0500636_0004061_945_2999 683
76 3300005718 Ga0068866_10019487 Ga0068866_100194873 684
77 3300017792 Ga0163161_10013646 Ga0163161_100136466 684
78 3300025933 Ga0207706_10024591 Ga0207706_100245913 684
79 3300026121 Ga0207683_10003613 Ga0207683_100036134 684
80 3300002459 JGI24751J29686_10001652 JGI24751J29686_100016522 685
81 3300005335 Ga0070666_10021471 Ga0070666_100214712 685
82 3300005355 Ga0070671_100025704 Ga0070671_1000257044 685
83 3300009101 Ga0105247_10003687 Ga0105247_100036874 685
84 iso_pu_bacteria 2585427687 2586209577 686
85 iso_pu_bacteria 2738541302 2738852127 686
86 iso_pu_bacteria 2739367651 2739589697 686
87 iso_pu_bacteria 2739367656 2739616479 686
88 iso_pu_bacteria 2739367663 2739647126 686
89 iso_pu_bacteria 2818991437 2819546665 686
90 iso_pu_bacteria 2842722452 2842725360 686
91 iso_pu_bacteria 2842909656 2842912637 686
92 iso_pu_bacteria 2849281842 2849281895 686
93 iso_pu_bacteria 2857627736 2857629604 686
94 iso_pu_bacteria 2902048731 2902052346 686
95 iso_pu_bacteria 2904445276 2904446803 686
96 iso_pu_bacteria 2945997725 2946002277 686
97 iso_pu_bacteria 2954016120 2954019176 686
98 3300009553 Ga0105249_10003587 Ga0105249_100035877 687
99 3300028381 Ga0268264_10000054 Ga0268264_10000054136 687
100 3300031507 Ga0307509_10060943 Ga0307509_100609432 688
101 3300005367 Ga0070667_100015842 Ga0070667_1000158422 689
102 3300005617 Ga0068859_100005195 Ga0068859_1000051954 689
103 3300005843 Ga0068860_100005282 Ga0068860_1000052827 689
104 3300006195 Ga0075366_10000655 Ga0075366_100006558 689
105 3300006931 Ga0097620_100005195 Ga0097620_1000051954 689
106 3300013297 Ga0157378_10018020 Ga0157378_100180203 689
107 3300015682 Ga0183373_1001 Ga0183373_1001360 689
108 3300025986 Ga0207658_10000794 Ga0207658_1000079419 689
109 3300028381 Ga0268264_10001568 Ga0268264_1000156823 689
110 iso_pu_bacteria 2929177148 2929183265 689
111 3300002773 JGI25152J39213_1000034 JGI25152J39213_100003471 690
112 3300002774 JGI25150J39212_1000001 JGI25150J39212_1000001186 690
113 3300003187 JGI25151J46595_10000001 JGI25151J46595_10000001613 690
114 3300003215 JGI25153J46596_10000001 JGI25153J46596_10000001502 690
115 3300003215 JGI25153J46596_10007424 JGI25153J46596_100074241 690
116 3300003354 JGI25160J50197_1003022 JGI25160J50197_10030224 690
117 3300003781 Ga0055536_1000024 Ga0055536_10000245 690
118 3300003790 Ga0055528_1000463 Ga0055528_100046324 690
119 3300003791 Ga0055530_10000261 Ga0055530_1000026133 690
120 3300005262 Ga0065165_1000148 Ga0065165_100014864 690
121 3300005288 Ga0065714_10065033 Ga0065714_100650334 690
122 3300013102 Ga0157371_10000172 Ga0157371_1000017285 690
123 3300013104 Ga0157370_10000531 Ga0157370_1000053120 690
124 3300013105 Ga0157369_10001883 Ga0157369_1000188315 690
125 3300013306 Ga0163162_10000558 Ga0163162_100005583 690
126 3300015261 Ga0182006_1000180 Ga0182006_100018056 690
127 3300015261 Ga0182006_1011700 Ga0182006_10117001 690
128 3300015262 Ga0182007_10000033 Ga0182007_1000003314 690
129 3300017792 Ga0163161_10011757 Ga0163161_100117571 690
130 3300017792 Ga0163161_10061103 Ga0163161_100611032 690
131 3300025245 Ga0207425_1000002 Ga0207425_1000002977 690
132 3300025258 Ga0209129_1000002 Ga0209129_1000002977 690
133 3300025273 Ga0209673_1000543 Ga0209673_100054348 690
134 3300025292 Ga0209676_1000008 Ga0209676_1000008264 690
135 3300025294 Ga0209025_1000004 Ga0209025_1000004213 690
136 3300025297 Ga0209758_1000006 Ga0209758_1000006213 690
137 3300025297 Ga0209758_1004190 Ga0209758_10041904 690
138 3300025298 Ga0209050_1000055 Ga0209050_1000055148 690
139 3300025298 Ga0209050_1000359 Ga0209050_100035936 690
140 3300025302 Ga0207426_1000752 Ga0207426_10007527 690
141 3300025304 Ga0209257_1004378 Ga0209257_10043787 690
142 3300031731 Ga0307405_10000003 Ga0307405_10000003398 690
143 3300031903 Ga0307407_10000010 Ga0307407_1000001017 690
144 3300032002 Ga0307416_100000014 Ga0307416_100000014214 690
145 3300046512 Ga0495610_0000051 Ga0495610_0000051_104848_106944 690
146 3300046558 Ga0495633_0000022 Ga0495633_0000022_25946_28021 690
147 3300053093 Ga0500651_0033635 Ga0500651_0033635_273_2348 690
148 3300014325 Ga0163163_10043909 Ga0163163_100439093 693
149 3300053153 Ga0500616_0005256 Ga0500616_0005256_2277_4412 693
150 iso_pu_bacteria 2818991442 2819571971 696
151 iso_pu_bacteria 2818991460 2819677742 696
152 iso_pu_bacteria 2821136567 2821141785 696
153 iso_pu_bacteria 2883068021 2883073220 696
154 iso_pu_bacteria 2884791551 2884797690 696
155 iso_pu_bacteria 2896085136 2896087374 696
156 iso_pu_bacteria 2904467357 2904469800 696
157 iso_pu_bacteria 2929239360 2929245384 696
158 iso_pu_bacteria 2945977869 2945979225 696
159 iso_pu_bacteria 2946013367 2946014907 696
160 3300009545 Ga0105237_10004641 Ga0105237_100046415 697
161 3300009545 Ga0105237_10020613 Ga0105237_100206136 697
162 3300030521 Ga0307511_10000228 Ga0307511_1000022837 697
163 3300005354 Ga0070675_100001598 Ga0070675_10000159811 698
164 3300005364 Ga0070673_100002785 Ga0070673_1000027852 698
165 3300005365 Ga0070688_100000309 Ga0070688_1000003096 698
166 3300005577 Ga0068857_100013591 Ga0068857_1000135913 698
167 3300005617 Ga0068859_100016142 Ga0068859_1000161424 698
168 3300005719 Ga0068861_100013992 Ga0068861_1000139922 698
169 3300005844 Ga0068862_100006483 Ga0068862_1000064832 698
170 3300006931 Ga0097620_100016141 Ga0097620_1000161414 698
171 3300025907 Ga0207645_10050813 Ga0207645_100508132 698
172 3300025923 Ga0207681_10008586 Ga0207681_100085866 698
173 3300025960 Ga0207651_10005521 Ga0207651_100055212 698
174 3300026116 Ga0207674_10007001 Ga0207674_100070013 698
175 3300026118 Ga0207675_100040769 Ga0207675_1000407693 698
176 3300027907 Ga0207428_10010479 Ga0207428_100104794 698
177 3300028380 Ga0268265_10036878 Ga0268265_100368782 698
178 iso_pu_bacteria 2929921140 2929927637 698
179 iso_pu_bacteria 8003151029 8003151484 698
180 3300005335 Ga0070666_10000031 Ga0070666_100000314 699
181 3300005335 Ga0070666_10059644 Ga0070666_100596442 699
182 3300005548 Ga0070665_100000018 Ga0070665_100000018122 699
183 3300005616 Ga0068852_100004741 Ga0068852_10000474110 699
184 3300005617 Ga0068859_100000588 Ga0068859_1000005883 699
185 3300005618 Ga0068864_100001622 Ga0068864_1000016222 699
186 3300005841 Ga0068863_100007387 Ga0068863_1000073876 699
187 3300005842 Ga0068858_100006593 Ga0068858_1000065933 699
188 3300005843 Ga0068860_100000252 Ga0068860_10000025262 699
189 3300005843 Ga0068860_100007096 Ga0068860_1000070961 699
190 3300006195 Ga0075366_10012919 Ga0075366_100129193 699
191 3300006931 Ga0097620_100000588 Ga0097620_10000058828 699
192 3300009093 Ga0105240_10001675 Ga0105240_1000167525 699
193 3300009174 Ga0105241_10001060 Ga0105241_100010604 699
194 3300009545 Ga0105237_10002600 Ga0105237_1000260019 699
195 3300009545 Ga0105237_10023547 Ga0105237_100235476 699
196 3300009551 Ga0105238_10003096 Ga0105238_100030964 699
197 3300009553 Ga0105249_10005487 Ga0105249_100054877 699
198 3300013297 Ga0157378_10107688 Ga0157378_101076882 699
199 3300013306 Ga0163162_10000410 Ga0163162_1000041023 699
200 3300013306 Ga0163162_10001090 Ga0163162_100010902 699
201 3300025903 Ga0207680_10000419 Ga0207680_100004193 699
202 3300025903 Ga0207680_10016678 Ga0207680_100166781 699
203 3300025911 Ga0207654_10000690 Ga0207654_1000069012 699
204 3300025913 Ga0207695_10020171 Ga0207695_100201716 699
205 3300025914 Ga0207671_10005382 Ga0207671_100053827 699
206 3300025924 Ga0207694_10018008 Ga0207694_100180083 699
207 3300025942 Ga0207689_10012811 Ga0207689_100128117 699
208 3300025961 Ga0207712_10037918 Ga0207712_100379182 699
209 3300026035 Ga0207703_10023138 Ga0207703_100231383 699
210 3300026088 Ga0207641_10000133 Ga0207641_1000013350 699
211 3300026095 Ga0207676_10005033 Ga0207676_100050338 699
212 3300028379 Ga0268266_10000026 Ga0268266_10000026239 699
213 3300028381 Ga0268264_10000015 Ga0268264_10000015137 699
214 3300028381 Ga0268264_10000019 Ga0268264_10000019235 699
215 3300028381 Ga0268264_10001076 Ga0268264_1000107620 699
216 3300031616 Ga0307508_10041677 Ga0307508_100416772 699
217 3300044658 Ga0466972_0000500 Ga0466972_0000500_4419_6524 699
218 3300046524 Ga0495648_0001530 Ga0495648_0001530_18458_20563 699
219 3300047443 Ga0495687_000031 Ga0495687_000031_92524_94629 699
220 3300053130 Ga0500642_0018811 Ga0500642_0018811_526_2631 699
221 3300053156 Ga0500622_0011208 Ga0500622_0011208_450_2555 699
222 iso_pu_bacteria 2929154850 2929160177 699
223 3300003320 rootH2_10002710 rootH2_100027107 700
224 3300003794 Ga0055531_10000132 Ga0055531_1000013227 700
225 3300005289 Ga0065704_10075278 Ga0065704_100752785 700
226 3300005617 Ga0068859_100050396 Ga0068859_1000503963 700
227 3300005618 Ga0068864_100015824 Ga0068864_1000158243 700
228 3300006931 Ga0097620_100050396 Ga0097620_1000503963 700
229 3300025208 Ga0209436_100345 Ga0209436_1003458 700
230 3300025284 Ga0209130_1002429 Ga0209130_10024294 700
231 3300025302 Ga0207426_1000057 Ga0207426_100005787 700
232 3300025304 Ga0209257_1000004 Ga0209257_10000041129 700
233 3300025900 Ga0207710_10001739 Ga0207710_100017397 700
234 3300025961 Ga0207712_10001306 Ga0207712_100013063 700
235 3300028381 Ga0268264_10011903 Ga0268264_100119033 700
236 3300041997 Ga0439431_0001257 Ga0439431_0001257_191_2296 700
237 3300048929 Ga0496126_0015825 Ga0496126_0015825_480_2594 700
238 3300049568 Ga0501031_0003639 Ga0501031_0003639_543_2663 700
239 3300049573 Ga0501037_0015219 Ga0501037_0015219_735_2855 700
240 3300049579 Ga0501043_0025718 Ga0501043_0025718_1139_3259 700
241 3300049703 Ga0501219_000067 Ga0501219_000067_2223_4370 700
242 3300049758 Ga0501241_000891 Ga0501241_000891_3359_5473 700
243 3300049822 Ga0501035_0033128 Ga0501035_0033128_218_2338 700
244 3300049823 Ga0501044_0115353 Ga0501044_0115353_169_2289 700
245 3300050005 Ga0501284_00015 Ga0501284_00015_63969_66116 700
246 3300002738 JGI25154J39366_1000020 JGI25154J39366_100002015 702
247 3300003215 JGI25153J46596_10005327 JGI25153J46596_100053273 702
248 3300003323 rootH1_10030614 rootH1_100306144 702
249 3300025246 Ga0209646_1000005 Ga0209646_1000005546 702
250 3300025250 Ga0209026_1000198 Ga0209026_100019825 702
251 3300025302 Ga0207426_1000888 Ga0207426_10008883 702
252 3300001979 JGI24740J21852_10002431 JGI24740J21852_100024313 703
253 3300049581 Ga0501047_0080613 Ga0501047_0080613_673_2784 703

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03793

PASTA

PASTA domain

661

715

0.96

PF00905

Transpeptidase

Penicillin binding protein transpeptidase domain

275

587

0.89

PF03717

PBP_dimer

Penicillin-binding Protein dimerisation domain

57

235

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
6i1g-assembly2.cif.gz_B crystal structure of tp domain from chlamydia trachomatis penicillin-binding protein 3 in complex with piperacillin 0.9107 239 582
6i1f-assembly2.cif.gz_B crystal structure of tp domain from chlamydia trachomatis penicillin-binding protein 3 in complex with amoxicillin 0.9077 239 582
6p54-assembly2.cif.gz_B crystal structure of transpeptidase domain of pbp2 from neisseria gonorrhoeae acylated by ceftriaxone 0.9006 239 580
6i1h-assembly2.cif.gz_B crystal structure of tp domain from chlamydia trachomatis penicillin-binding protein 3 in complex with meropenem 0.8999 237 582
4u3t-assembly2.cif.gz_B crystal structure of the transpeptidase domain of neisseria gonorrhoeae penicillin-binding protein 2 derived from the penicillin-resistant strain 6140 0.8975 239 580
ID Description Score Start End Superfamily
af_Q2FZ94_600_656_3.30.10.20 Alpha Beta;2-Layer Sandwich;Trypsin Inhibitor V; Chain A; 0.9535 649 703 3.30.10.20
af_Q2FZ94_600_656_3.30.10.20 Alpha Beta;2-Layer Sandwich;Trypsin Inhibitor V; Chain A; 0.9063 649 703 3.30.10.20
af_Q2FZ94_658_713_3.30.10.20 Alpha Beta;2-Layer Sandwich;Trypsin Inhibitor V; Chain A; 0.8982 649 703 3.30.10.20
5uy7A00 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8953 239 580 3.40.710.10
3ue3A03 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8896 293 492 3.40.710.10
ID Description Score Start End GO Terms
AF-A0A355C6W5-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9544 413 572 GO:0005886
GO:0008658
GO:0071555
AF-A0A4Q3UYK7-F1-model_v4 Peptidoglycan glycosyltransferase 0.9436 84 504 GO:0005886
GO:0008658
GO:0016740
GO:0071555
AF-A0A355C6W5-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9368 413 572 GO:0005886
GO:0008658
GO:0071555
AF-X1Q2X3-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9293 303 571 GO:0005886
GO:0008658
GO:0071555
AF-X1Q2X3-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9226 303 571 GO:0005886
GO:0008658
GO:0071555

Feature Viewer

pLDDT pTM Quality
84.22 0.66 Medium
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Predicted Structure (AlphaFold2)

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