F356941

General Info

Members Datasets Scaffolds Average Seq Length
244 188 177 568

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2838122688|2838127608
Length 634
Sequence VTAWCGHLSRSAAAWCGQVLGYPEELASFTIHVGLFAVAAFIFIRLVWKRRRAAAAARPDEPPRAHQMSSPLHACRGVLVGLGLITAMLNVLYLTGSFFMLEVYDRVVPSRSVPTLIGLAALVGALYSFQAFLDILRGRILVRIGEWLDRAFSARAYDVVARWPLRARGSGDGLQPVRDLDQVRSYLSGLGPTALFDLPWIPFYLAICFMFHPLLGLTASIGSVMLVSLTLLTDRLTRARTKEVTGQIAQRNALAEASRRNAEVLQAMGMRGRLAARWADVNDSYMFTQRRAADIAGGFGSASKVLRMVLQSAVLAVGGYLVIIQEATAGIIIAGAILTSRALAPVELAIAHWKSLIAARQSWKRLQQQWAQLPAEEEKTPLPPPCKTLAVEAVSVAPPGEQTAVVLEASFALNPGQGVGIVGPSASGKSSLVRAIVGVWGAARGKVRLDGAALDQWSSEALGRHIGYLPQDVELFAGTVAQNINRFEPVPDAEAMIAAANAAGVHQMVLRLPKGYDTPIGEGGAALSAGQRQRIALARALYREPFLVVLDEPNSNLDSDGDQALTQAIHGVRARGGIVIVVAHRTSALAGVDQLIVMAEGRVQAFGPKDALLAKMMQPRPAVPLKVVTEGASL

Samples

Sample ID Description Type Environment
1 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
2 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
3 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
4 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
5 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
6 2515075009 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
7 2515154116 Rhizobium ruizarguesonis Ps8 Isolate Nodule
8 2517093001 Bradyrhizobium japonicum USDA 124 Isolate Nodule
9 2519899620 Rhizobium sp. Pop5 Isolate Nodule
10 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
11 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
12 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
13 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
14 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
15 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
16 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
17 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
18 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
19 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
20 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
21 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
22 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
23 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
24 2791355261 Rhizobium sp. J15 Isolate Nodule
25 2791355266 Rhizobium sp. L43 Isolate Nodule
26 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
27 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
28 2838048938 Rhizobium pisi 27/80 Isolate Nodule
29 2838122688 Bradyrhizobium sp. CIR3A Isolate Nodule
30 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
31 2838680041 Rhizobium leguminosarum SEMIA 415 Isolate Nodule
32 2838694306 Rhizobium leguminosarum SEMIA 421 Isolate Nodule
33 2838707686 Rhizobium leguminosarum SEMIA 430 Isolate Nodule
34 2841941048 Bradyrhizobium sp. SBR1B Isolate Nodule
35 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
36 2841966195 Bradyrhizobium sp. CIR18 Isolate Nodule
37 2841974524 Bradyrhizobium sp. CIR48 Isolate Nodule
38 2841983080 Bradyrhizobium sp. IAR9 Isolate Nodule
39 2842077413 Rhizobium leguminosarum SEMIA 422 Isolate Nodule
40 2842118031 Rhizobium esperanzae SEMIA 420 Isolate Nodule
41 2842237096 Rhizobium leguminosarum SEMIA 482 Isolate Nodule
42 2842291075 Rhizobium leguminosarum SEMIA 491 Isolate Nodule
43 2842370503 Rhizobium leguminosarum SEMIA 4022 Isolate Nodule
44 2842377471 Rhizobium leguminosarum SEMIA 4024 Isolate Nodule
45 2842384541 Rhizobium leguminosarum SEMIA 4025 Isolate Nodule
46 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
47 2857509624 Bradyrhizobium sp. R-73088 Isolate Unclassified
48 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
49 2881364244 Bradyrhizobium sp. RP6 Isolate Unclassified
50 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
51 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
52 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
53 2935894831 Rhizobium leguminosarum SEMIA 419 Isolate Nodule
54 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
55 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
56 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
57 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
58 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
59 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
60 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
61 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
62 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
63 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
64 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
65 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
66 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
67 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
68 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
69 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
70 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
71 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
72 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
73 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
74 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
75 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
76 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
77 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
78 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
79 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
80 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
81 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
82 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
83 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
84 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
85 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
86 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
87 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
89 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
91 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
92 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
93 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
94 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
103 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
106 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
107 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
108 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
109 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
110 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
111 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
112 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
113 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
114 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
115 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
116 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
117 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
118 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
119 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
120 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
121 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
122 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
123 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
124 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
125 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
126 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
127 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
128 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
129 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
130 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
131 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
132 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
133 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
134 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
135 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
136 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
137 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
138 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
139 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
140 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
141 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
142 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
143 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
144 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
145 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
146 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
147 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
148 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
149 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
150 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
151 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
152 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
153 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
154 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
155 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
156 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
157 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
158 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
159 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
160 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
161 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
162 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
163 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
164 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
165 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
166 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
167 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
168 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
169 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
170 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
171 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
172 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
173 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
174 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
175 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
176 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
177 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
178 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
179 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
180 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
181 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
182 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
183 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
184 8005460587 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
185 8005695170 Rhizobium sp. RMa-01 Isolate Unclassified
186 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
187 8056125926 Pseudomonas azerbaijanorientalis SWRI123 Isolate Rhizosphere
188 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.54
Metatranscriptomes 0
Isolates 27.46

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.93
Nodule 16.8
Rhizoplane 0.41
Rhizosphere 54.1
Stem 0
Stem Tuber 0
Unclassified 14.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10006670 3300003215 Bacteria 5807
2 rootL2_10015599 3300003322 Bacteria 13600
3 Ga0055524_1001708 3300003775 Bacteria 12205
4 Ga0055524_1009613 3300003775 Bacteria 3913
5 Ga0055528_1001816 3300003790 Bacteria 12205
6 Ga0065714_10003634 3300005288 Bacteria 8786
7 Ga0070667_100002673 3300005367 Bacteria 15435
8 Ga0070708_100031361 3300005445 Bacteria 4599
9 Ga0070698_100036312 3300005471 Bacteria 5091
10 Ga0070697_100012084 3300005536 Bacteria 6760
11 Ga0068864_100014181 3300005618 Bacteria 6615
12 Ga0068863_100000052 3300005841 Bacteria 125430
13 Ga0068858_100000935 3300005842 Bacteria 30230
14 Ga0068858_100007332 3300005842 Bacteria 10673
15 Ga0068860_100000007 3300005843 Bacteria 429329
16 Ga0068862_100005670 3300005844 Bacteria 10423
17 Ga0081540_1006788 3300005983 Bacteria 8272
18 Ga0081539_10004404 3300005985 Bacteria 15600
19 Ga0070717_10014658 3300006028 Bacteria 6032
20 Ga0075432_10002898 3300006058 Bacteria 5767
21 Ga0075369_10000941 3300006186 Bacteria 9682
22 Ga0105240_10000976 3300009093 Bacteria 50953
23 Ga0105245_10000277 3300009098 Bacteria 48499
24 Ga0114129_10084634 3300009147 Bacteria 4402
25 Ga0105243_10016222 3300009148 Bacteria 5636
26 Ga0105238_10072643 3300009551 Bacteria 3435
27 Ga0123341_1000219 3300009765 Bacteria 29972
28 Ga0123342_1005154 3300009766 Bacteria 19253
29 Ga0105239_10018017 3300010375 Bacteria 7812
30 Ga0157371_10071856 3300013102 Bacteria 2450
31 Ga0157374_10040466 3300013296 Bacteria 4293
32 Ga0163163_10189868 3300014325 Bacteria 2103
33 Ga0182005_1019749 3300015265 Bacteria 1856
34 Ga0163161_10051928 3300017792 Bacteria 2971
35 Ga0209455_1005845 3300025272 Bacteria 3725
36 Ga0209673_1000567 3300025273 Bacteria 59050
37 Ga0209673_1001105 3300025273 Bacteria 30170
38 Ga0209025_1004408 3300025294 Bacteria 12246
39 Ga0209564_1000592 3300025295 Bacteria 57093
40 Ga0209758_1000374 3300025297 Bacteria 78052
41 Ga0209256_1001796 3300025299 Bacteria 20243
42 Ga0209256_1003082 3300025299 Bacteria 12236
43 Ga0207426_1000354 3300025302 Bacteria 83734
44 Ga0207684_10003003 3300025910 Bacteria 16721
45 Ga0207695_10000948 3300025913 Bacteria 51627
46 Ga0207694_10044586 3300025924 Bacteria 3424
47 Ga0207687_10000271 3300025927 Bacteria 35431
48 Ga0207658_10009434 3300025986 Bacteria 6618
49 Ga0207703_10000751 3300026035 Bacteria 32040
50 Ga0207703_10006231 3300026035 Bacteria 9548
51 Ga0207641_10000042 3300026088 Bacteria 186384
52 Ga0207676_10007005 3300026095 Bacteria 7989
53 Ga0207428_10000782 3300027907 Bacteria 36072
54 Ga0207428_10007336 3300027907 Bacteria 10064
55 Ga0268265_10010057 3300028380 Bacteria 6387
56 Ga0268264_10000134 3300028381 Bacteria 179475
57 Ga0265327_10000500 3300031251 Bacteria 68037
58 Ga0307508_10005073 3300031616 Bacteria 12639
59 Ga0307406_10026443 3300031901 Bacteria 3485
60 Ga0307415_100022940 3300032126 Bacteria 3864
61 Ga0439438_008092 3300041405 Bacteria 3529
62 Ga0439447_011575 3300041407 Bacteria 2568
63 Ga0439466_0000535 3300041411 Bacteria 14372
64 Ga0439465_0012832 3300041413 Bacteria 2621
65 Ga0451835_0634759 3300041492 Bacteria 6029
66 Ga0451841_1097982 3300041498 Bacteria 4268
67 Ga0451845_0728726 3300041501 Bacteria 17951
68 Ga0451847_0291690 3300041503 Bacteria 2011
69 Ga0451851_1018981 3300041507 Bacteria 4317
70 Ga0451853_0375546 3300041512 Bacteria 5577
71 Ga0439432_002325 3300042006 Bacteria 7168
72 Ga0439451_000358 3300042009 Bacteria 8843
73 Ga0439452_003593 3300042010 Bacteria 5404
74 Ga0495617_000126 3300046452 Bacteria 50425
75 Ga0495617_000156 3300046452 Bacteria 43507
76 Ga0495617_018581 3300046452 Bacteria 2351
77 Ga0495591_000889 3300046458 Bacteria 20922
78 Ga0495591_001128 3300046458 Bacteria 17624
79 Ga0495638_0002794 3300046460 Bacteria 14005
80 Ga0495638_0033185 3300046460 Bacteria 3302
81 Ga0495638_0080783 3300046460 Bacteria 1974
82 Ga0495605_0029290 3300046474 Bacteria 2836
83 Ga0495584_0000373 3300046491 Bacteria 30942
84 Ga0495585_0006799 3300046492 Bacteria 7059
85 Ga0495607_0054262 3300046501 Bacteria 2310
86 Ga0495583_0000804 3300046506 Bacteria 38732
87 Ga0495583_0000994 3300046506 Bacteria 32419
88 Ga0495583_0001175 3300046506 Bacteria 28264
89 Ga0495583_0015182 3300046506 Bacteria 4203
90 Ga0495606_0005572 3300046507 Bacteria 11999
91 Ga0495610_0000828 3300046512 Bacteria 28914
92 Ga0495610_0000915 3300046512 Bacteria 27419
93 Ga0495610_0003092 3300046512 Bacteria 13284
94 Ga0495610_0019430 3300046512 Bacteria 3801
95 Ga0495616_0004646 3300046513 Bacteria 8621
96 Ga0495616_0044962 3300046513 Bacteria 2238
97 Ga0495620_0000457 3300046515 Bacteria 26955
98 Ga0495631_0001820 3300046518 Bacteria 12598
99 Ga0495632_0013011 3300046519 Bacteria 4768
100 Ga0495637_0000435 3300046520 Bacteria 30470
101 Ga0495643_0001926 3300046522 Bacteria 17487
102 Ga0495643_0010210 3300046522 Bacteria 5785
103 Ga0495648_0000644 3300046524 Bacteria 37213
104 Ga0495648_0003733 3300046524 Bacteria 13281
105 Ga0495654_0000411 3300046530 Bacteria 36517
106 Ga0495654_0013033 3300046530 Bacteria 4453
107 Ga0495597_0036926 3300046542 Bacteria 2197
108 Ga0495622_0002509 3300046557 Bacteria 8874
109 Ga0495622_0045689 3300046557 Bacteria 2035
110 Ga0495633_0013385 3300046558 Bacteria 4327
111 Ga0495668_0032598 3300046616 Bacteria 2930
112 Ga0495668_0055418 3300046616 Bacteria 2189
113 Ga0495611_0002978 3300046648 Bacteria 7553
114 Ga0495611_0012323 3300046648 Bacteria 3636
115 Ga0495625_0003830 3300046660 Bacteria 14555
116 Ga0495661_0017846 3300046665 Bacteria 4677
117 Ga0495588_0004361 3300046674 Bacteria 6248
118 Ga0495588_0034577 3300046674 Bacteria 2558
119 Ga0495670_0022813 3300046691 Bacteria 3091
120 Ga0495649_0002467 3300046694 Bacteria 12996
121 Ga0495649_0018957 3300046694 Bacteria 3865
122 Ga0495649_0076210 3300046694 Bacteria 1795
123 Ga0495589_0000360 3300046794 Bacteria 35369
124 Ga0495660_0010324 3300046810 Bacteria 5430
125 Ga0495636_0000309 3300047318 Bacteria 18989
126 Ga0495672_0004690 3300047320 Bacteria 11063
127 Ga0495672_0018344 3300047320 Bacteria 4649
128 Ga0495672_0023226 3300047320 Bacteria 4018
129 Ga0495672_0028785 3300047320 Bacteria 3508
130 Ga0495683_0000367 3300047323 Bacteria 37129
131 Ga0495687_029272 3300047443 Bacteria 2552
132 Ga0495673_0003749 3300047469 Bacteria 9865
133 Ga0495681_0002813 3300047470 Bacteria 12309
134 Ga0495686_0002714 3300047472 Bacteria 16201
135 Ga0495686_0004283 3300047472 Bacteria 11823
136 Ga0495626_0000524 3300048091 Bacteria 38319
137 Ga0495626_0000561 3300048091 Bacteria 36868
138 Ga0496105_0000436 3300048908 Bacteria 27341
139 Ga0496116_0001265 3300048919 Bacteria 29157
140 Ga0496116_0052838 3300048919 Bacteria 2688
141 Ga0496116_0060328 3300048919 Bacteria 2461
142 Ga0496121_0002117 3300048924 Bacteria 31186
143 Ga0496121_0018121 3300048924 Bacteria 7123
144 Ga0496121_0024898 3300048924 Bacteria 5705
145 Ga0496122_0008851 3300048925 Bacteria 10741
146 Ga0496122_0030200 3300048925 Bacteria 4550
147 Ga0496122_0075303 3300048925 Bacteria 2382
148 Ga0496123_0016702 3300048926 Bacteria 5942
149 Ga0496123_0023453 3300048926 Bacteria 4722
150 Ga0496124_0006938 3300048927 Bacteria 12171
151 Ga0496124_0030132 3300048927 Bacteria 4821
152 Ga0496124_0152678 3300048927 Bacteria 1809
153 Ga0496125_0017983 3300048928 Bacteria 6718
154 Ga0496126_0000343 3300048929 Bacteria 97986
155 Ga0495678_000778 3300049459 Bacteria 28590
156 Ga0495678_006620 3300049459 Bacteria 6139
157 nmdc:mga05p37_70790_c1 3300050507 Bacteria 4290
158 nmdc:mga0sz30_12299_c1 3300050516 Bacteria 3328
159 Ga0500578_0003002 3300053086 Bacteria 13086
160 Ga0500641_0001600 3300053096 Bacteria 8064
161 Ga0500557_000543 3300053105 Bacteria 5082
162 Ga0500608_000645 3300053122 Bacteria 12826
163 Ga0500618_002671 3300053125 Bacteria 6541
164 Ga0500559_0035903 3300053136 Bacteria 2142
165 Ga0500568_0000355 3300053139 Bacteria 35644
166 Ga0500568_0000781 3300053139 Bacteria 22428
167 Ga0500573_0000040 3300053140 Bacteria 105074
168 Ga0500574_000019 3300053141 Bacteria 32310
169 Ga0500616_0001467 3300053153 Bacteria 22484
170 Ga0500616_0001797 3300053153 Bacteria 19538
171 Ga0500616_0002397 3300053153 Bacteria 15641
172 Ga0500622_0000083 3300053156 Bacteria 101289
173 Ga0500622_0000278 3300053156 Bacteria 52272
174 Ga0500638_000458 3300053162 Bacteria 9879
175 Ga0500636_0000119 3300053177 Bacteria 41322
176 Ga0500636_0000790 3300053177 Bacteria 17038
177 Ga0500636_0001389 3300053177 Bacteria 13155

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0075303 Ga0496122_0075303_880_2370 453
2 3300046660 Ga0495625_0003830 Ga0495625_0003830_12973_14541 475
3 3300025273 Ga0209673_1000567 Ga0209673_100056744 485
4 3300025295 Ga0209564_1000592 Ga0209564_10005923 485
5 3300025299 Ga0209256_1003082 Ga0209256_10030823 485
6 3300048929 Ga0496126_0000343 Ga0496126_0000343_29247_30821 487
7 3300048927 Ga0496124_0152678 Ga0496124_0152678_126_1751 488
8 3300046501 Ga0495607_0054262 Ga0495607_0054262_85_1707 498
9 3300041405 Ga0439438_008092 Ga0439438_008092_1335_3017 501
10 3300041407 Ga0439447_011575 Ga0439447_011575_56_1738 501
11 iso_pu_bacteria 2857531043 2857537084 502
12 3300046506 Ga0495583_0000804 Ga0495583_0000804_25213_26895 505
13 3300046512 Ga0495610_0000915 Ga0495610_0000915_19799_21484 505
14 3300047472 Ga0495686_0004283 Ga0495686_0004283_3864_5549 505
15 3300046474 Ga0495605_0029290 Ga0495605_0029290_318_1934 507
16 3300046522 Ga0495643_0010210 Ga0495643_0010210_83_1702 507
17 3300046674 Ga0495588_0034577 Ga0495588_0034577_525_2222 507
18 3300046694 Ga0495649_0076210 Ga0495649_0076210_61_1680 507
19 3300046492 Ga0495585_0006799 Ga0495585_0006799_4042_5724 508
20 iso_pu_bacteria 2857509624 2857515289 510
21 iso_pu_bacteria 2881364244 2881364878 510
22 3300027907 Ga0207428_10000782 Ga0207428_1000078212 511
23 3300041411 Ga0439466_0000535 Ga0439466_0000535_4442_6124 511
24 3300042006 Ga0439432_002325 Ga0439432_002325_2865_4547 511
25 3300046491 Ga0495584_0000373 Ga0495584_0000373_18232_19908 511
26 3300046507 Ga0495606_0005572 Ga0495606_0005572_7946_9622 511
27 3300046512 Ga0495610_0003092 Ga0495610_0003092_9867_11543 511
28 3300046513 Ga0495616_0044962 Ga0495616_0044962_140_1816 511
29 3300046515 Ga0495620_0000457 Ga0495620_0000457_5910_7586 511
30 3300046518 Ga0495631_0001820 Ga0495631_0001820_6224_7900 511
31 3300046520 Ga0495637_0000435 Ga0495637_0000435_20716_22392 511
32 3300046524 Ga0495648_0000644 Ga0495648_0000644_13028_14704 511
33 3300046530 Ga0495654_0013033 Ga0495654_0013033_1019_2695 511
34 3300046665 Ga0495661_0017846 Ga0495661_0017846_448_2124 511
35 3300046694 Ga0495649_0018957 Ga0495649_0018957_1187_2863 511
36 3300046794 Ga0495589_0000360 Ga0495589_0000360_22514_24190 511
37 3300046810 Ga0495660_0010324 Ga0495660_0010324_1695_3371 511
38 3300047323 Ga0495683_0000367 Ga0495683_0000367_22517_24193 511
39 3300047470 Ga0495681_0002813 Ga0495681_0002813_3717_5393 511
40 3300047472 Ga0495686_0002714 Ga0495686_0002714_14310_15986 511
41 3300048091 Ga0495626_0000524 Ga0495626_0000524_21440_23122 511
42 3300005536 Ga0070697_100012084 Ga0070697_1000120843 513
43 3300025910 Ga0207684_10003003 Ga0207684_100030034 513
44 3300048927 Ga0496124_0030132 Ga0496124_0030132_2937_4655 515
45 3300050507 nmdc:mga05p37_70790_c1 nmdc:mga05p37_70790_c1_2050_3759 516
46 3300003322 rootL2_10015599 rootL2_100155993 517
47 3300046616 Ga0495668_0032598 Ga0495668_0032598_678_2312 518
48 iso_pu_bacteria 8056125926 8056127539 519
49 iso_pu_bacteria 2933016740 2933022788 520
50 3300046460 Ga0495638_0080783 Ga0495638_0080783_211_1887 521
51 3300013102 Ga0157371_10071856 Ga0157371_100718561 522
52 3300048919 Ga0496116_0001265 Ga0496116_0001265_21091_22770 522
53 3300009148 Ga0105243_10016222 Ga0105243_100162222 523
54 3300015265 Ga0182005_1019749 Ga0182005_10197492 523
55 3300017792 Ga0163161_10051928 Ga0163161_100519282 523
56 3300046458 Ga0495591_001128 Ga0495591_001128_7901_9583 523
57 3300046506 Ga0495583_0000994 Ga0495583_0000994_22145_23827 523
58 3300046512 Ga0495610_0000828 Ga0495610_0000828_8059_9741 523
59 3300046530 Ga0495654_0000411 Ga0495654_0000411_22131_23813 523
60 3300046557 Ga0495622_0002509 Ga0495622_0002509_1971_3653 523
61 3300046674 Ga0495588_0004361 Ga0495588_0004361_108_1790 523
62 3300046694 Ga0495649_0002467 Ga0495649_0002467_8189_9871 523
63 3300047320 Ga0495672_0023226 Ga0495672_0023226_1047_2729 523
64 3300047469 Ga0495673_0003749 Ga0495673_0003749_2877_4559 523
65 3300048091 Ga0495626_0000561 Ga0495626_0000561_22296_23978 523
66 3300048927 Ga0496124_0006938 Ga0496124_0006938_10301_11983 523
67 3300049459 Ga0495678_006620 Ga0495678_006620_2766_4448 523
68 3300005445 Ga0070708_100031361 Ga0070708_1000313612 525
69 3300005471 Ga0070698_100036312 Ga0070698_1000363122 525
70 3300006028 Ga0070717_10014658 Ga0070717_100146583 525
71 3300005983 Ga0081540_1006788 Ga0081540_10067887 527
72 3300006186 Ga0075369_10000941 Ga0075369_100009415 527
73 3300025302 Ga0207426_1000354 Ga0207426_100035452 527
74 iso_pu_bacteria 2523231067 2523469858 528
75 3300046519 Ga0495632_0013011 Ga0495632_0013011_2637_4391 529
76 3300009093 Ga0105240_10000976 Ga0105240_1000097634 530
77 3300010375 Ga0105239_10018017 Ga0105239_100180173 530
78 3300042010 Ga0439452_003593 Ga0439452_003593_2175_3965 530
79 3300048919 Ga0496116_0060328 Ga0496116_0060328_319_2031 530
80 3300048924 Ga0496121_0018121 Ga0496121_0018121_4109_5821 530
81 3300048925 Ga0496122_0008851 Ga0496122_0008851_6823_8535 530
82 3300048926 Ga0496123_0016702 Ga0496123_0016702_84_1796 530
83 3300048928 Ga0496125_0017983 Ga0496125_0017983_123_1835 530
84 3300009098 Ga0105245_10000277 Ga0105245_1000027712 531
85 3300009551 Ga0105238_10072643 Ga0105238_100726432 531
86 3300013296 Ga0157374_10040466 Ga0157374_100404663 531
87 3300046460 Ga0495638_0033185 Ga0495638_0033185_1179_2888 531
88 3300009147 Ga0114129_10084634 Ga0114129_100846341 532
89 3300053139 Ga0500568_0000355 Ga0500568_0000355_22755_24455 532
90 3300053156 Ga0500622_0000278 Ga0500622_0000278_26056_27807 532
91 3300025273 Ga0209673_1001105 Ga0209673_100110513 533
92 3300046458 Ga0495591_000889 Ga0495591_000889_11476_13263 533
93 3300046691 Ga0495670_0022813 Ga0495670_0022813_555_2342 533
94 3300048924 Ga0496121_0002117 Ga0496121_0002117_7185_8954 533
95 3300053156 Ga0500622_0000083 Ga0500622_0000083_52948_54717 533
96 3300046452 Ga0495617_000156 Ga0495617_000156_21779_23524 534
97 3300047443 Ga0495687_029272 Ga0495687_029272_655_2355 534
98 iso_pu_bacteria 2838048938 2838049482 534
99 iso_pu_bacteria 2838680041 2838682375 534
100 iso_pu_bacteria 2838694306 2838696946 534
101 iso_pu_bacteria 2838707686 2838709813 534
102 iso_pu_bacteria 2842118031 2842119505 534
103 iso_pu_bacteria 2842237096 2842239226 534
104 iso_pu_bacteria 2842291075 2842291650 534
105 iso_pu_bacteria 2842370503 2842372941 534
106 iso_pu_bacteria 2842377471 2842378046 534
107 iso_pu_bacteria 2842384541 2842386013 534
108 iso_pu_bacteria 2935894831 2935899187 534
109 3300047320 Ga0495672_0028785 Ga0495672_0028785_1649_3358 535
110 3300053153 Ga0500616_0001467 Ga0500616_0001467_8910_10619 535
111 iso_pu_bacteria 2775506901 2776258148 536
112 iso_pu_bacteria 2775507049 2776911511 536
113 3300041503 Ga0451847_0291690 Ga0451847_0291690_34_1749 537
114 3300042009 Ga0439451_000358 Ga0439451_000358_6300_8090 537
115 3300046452 Ga0495617_000126 Ga0495617_000126_47884_49674 537
116 3300046513 Ga0495616_0004646 Ga0495616_0004646_767_2557 537
117 3300046648 Ga0495611_0002978 Ga0495611_0002978_5118_6908 537
118 3300047318 Ga0495636_0000309 Ga0495636_0000309_2065_3855 537
119 3300047320 Ga0495672_0004690 Ga0495672_0004690_10_1800 537
120 iso_pu_bacteria 2510917022 2511133165 537
121 iso_pu_bacteria 2585427531 2585563732 537
122 iso_pu_bacteria 2585427609 2585907070 537
123 iso_pu_bacteria 2585428125 2587982936 537
124 3300031901 Ga0307406_10026443 Ga0307406_100264432 538
125 3300046524 Ga0495648_0003733 Ga0495648_0003733_4101_5813 538
126 3300048924 Ga0496121_0024898 Ga0496121_0024898_1697_3412 538
127 3300048925 Ga0496122_0030200 Ga0496122_0030200_809_2521 538
128 3300048926 Ga0496123_0023453 Ga0496123_0023453_1573_3285 538
129 3300049459 Ga0495678_000778 Ga0495678_000778_4405_6117 538
130 3300053162 Ga0500638_000458 Ga0500638_000458_4170_5882 538
131 3300053177 Ga0500636_0001389 Ga0500636_0001389_7421_9133 538
132 3300003775 Ga0055524_1009613 Ga0055524_10096132 539
133 3300025299 Ga0209256_1001796 Ga0209256_100179617 539
134 3300025294 Ga0209025_1004408 Ga0209025_10044083 540
135 iso_pu_bacteria 2919166419 2919171114 540
136 iso_pu_bacteria 8056875544 8056876675 540
137 iso_pu_bacteria 2515075009 2515109911 541
138 iso_pu_bacteria 2895511927 2895518918 541
139 iso_pu_bacteria 8005460587 8005465945 541
140 3300046558 Ga0495633_0013385 Ga0495633_0013385_1629_3383 542
141 3300053125 Ga0500618_002671 Ga0500618_002671_727_2475 542
142 3300025913 Ga0207695_10000948 Ga0207695_1000094834 543
143 iso_pu_bacteria 2582581316 2585332391 543
144 3300005288 Ga0065714_10003634 Ga0065714_100036344 544
145 3300005985 Ga0081539_10004404 Ga0081539_100044049 544
146 3300006058 Ga0075432_10002898 Ga0075432_100028984 544
147 3300027907 Ga0207428_10007336 Ga0207428_100073365 544
148 3300031251 Ga0265327_10000500 Ga0265327_1000050029 544
149 iso_pu_bacteria 2513237144 2513910070 544
150 iso_pu_bacteria 2513237146 2513928801 544
151 iso_pu_bacteria 2599185170 2599414988 544
152 iso_pu_bacteria 2838035591 2838039285 544
153 iso_pu_bacteria 2838661181 2838668227 544
154 3300041413 Ga0439465_0012832 Ga0439465_0012832_674_2419 545
155 3300046460 Ga0495638_0002794 Ga0495638_0002794_415_2163 545
156 3300047320 Ga0495672_0018344 Ga0495672_0018344_829_2577 545
157 3300050516 nmdc:mga0sz30_12299_c1 nmdc:mga0sz30_12299_c1_137_1888 545
158 3300053096 Ga0500641_0001600 Ga0500641_0001600_4603_6336 545
159 3300053139 Ga0500568_0000781 Ga0500568_0000781_8864_10612 545
160 3300053153 Ga0500616_0001797 Ga0500616_0001797_12004_13752 545
161 iso_pu_bacteria 2517093001 2517107659 545
162 3300032126 Ga0307415_100022940 Ga0307415_1000229402 546
163 iso_pu_bacteria 2842077413 2842077987 546
164 iso_pu_bacteria 2513237084 2513574041 547
165 iso_pu_bacteria 2515075009 2515109907 547
166 iso_pu_bacteria 2515154116 2515661776 547
167 iso_pu_bacteria 2519899620 2520380297 547
168 iso_pu_bacteria 2582581298 2585220573 547
169 iso_pu_bacteria 2585427527 2585536836 547
170 iso_pu_bacteria 2585427529 2585548376 547
171 iso_pu_bacteria 2643221634 2644196130 547
172 iso_pu_bacteria 2643221634 2644196207 547
173 iso_pu_bacteria 2643221643 2644240893 547
174 iso_pu_bacteria 2791355261 2793331549 547
175 iso_pu_bacteria 2791355266 2793364483 547
176 iso_pu_bacteria 2842395702 2842398535 547
177 iso_pu_bacteria 3005409236 3005413670 547
178 iso_pu_bacteria 8005460587 8005465941 547
179 iso_pu_bacteria 8005695170 8005700841 547
180 iso_pu_bacteria 8024486573 8024493093 547
181 3300005842 Ga0068858_100000935 Ga0068858_10000093517 548
182 3300025924 Ga0207694_10044586 Ga0207694_100445862 548
183 3300025927 Ga0207687_10000271 Ga0207687_1000027137 548
184 3300026035 Ga0207703_10000751 Ga0207703_100007517 548
185 3300031616 Ga0307508_10005073 Ga0307508_100050737 548
186 3300053177 Ga0500636_0000790 Ga0500636_0000790_8728_10515 548
187 3300046512 Ga0495610_0019430 Ga0495610_0019430_752_2506 549
188 3300046522 Ga0495643_0001926 Ga0495643_0001926_7764_9518 549
189 3300046542 Ga0495597_0036926 Ga0495597_0036926_181_1935 549
190 3300053086 Ga0500578_0003002 Ga0500578_0003002_8171_9925 549
191 3300053153 Ga0500616_0002397 Ga0500616_0002397_8764_10518 549
192 iso_pu_bacteria 2510917030 2511198632 549
193 iso_pu_bacteria 2513237146 2513930679 549
194 iso_pu_bacteria 2582581298 2585221424 549
195 iso_pu_bacteria 2585427529 2585544406 549
196 iso_pu_bacteria 2599185170 2599413875 549
197 iso_pu_bacteria 2838035591 2838042881 549
198 iso_pu_bacteria 2838122688 2838127608 549
199 iso_pu_bacteria 2841941048 2841941446 549
200 iso_pu_bacteria 2841949485 2841952543 549
201 iso_pu_bacteria 2841966195 2841967581 549
202 iso_pu_bacteria 2841974524 2841979023 549
203 iso_pu_bacteria 2841983080 2841986568 549
204 3300005367 Ga0070667_100002673 Ga0070667_10000267315 550
205 3300005618 Ga0068864_100014181 Ga0068864_1000141815 550
206 3300005841 Ga0068863_100000052 Ga0068863_10000005223 550
207 3300005842 Ga0068858_100007332 Ga0068858_1000073324 550
208 3300005843 Ga0068860_100000007 Ga0068860_100000007393 550
209 3300005844 Ga0068862_100005670 Ga0068862_1000056705 550
210 3300009765 Ga0123341_1000219 Ga0123341_10002192 550
211 3300009766 Ga0123342_1005154 Ga0123342_100515416 550
212 3300014325 Ga0163163_10189868 Ga0163163_101898682 550
213 3300025272 Ga0209455_1005845 Ga0209455_10058452 550
214 3300025986 Ga0207658_10009434 Ga0207658_100094345 550
215 3300026035 Ga0207703_10006231 Ga0207703_100062314 550
216 3300026088 Ga0207641_10000042 Ga0207641_1000004223 550
217 3300026095 Ga0207676_10007005 Ga0207676_100070053 550
218 3300028380 Ga0268265_10010057 Ga0268265_100100574 550
219 3300028381 Ga0268264_10000134 Ga0268264_1000013423 550
220 3300041492 Ga0451835_0634759 Ga0451835_0634759_665_2440 550
221 3300041498 Ga0451841_1097982 Ga0451841_1097982_1824_3599 550
222 3300041501 Ga0451845_0728726 Ga0451845_0728726_12587_14362 550
223 3300041507 Ga0451851_1018981 Ga0451851_1018981_1961_3736 550
224 3300041512 Ga0451853_0375546 Ga0451853_0375546_665_2440 550
225 3300046506 Ga0495583_0015182 Ga0495583_0015182_1782_3539 550
226 3300046557 Ga0495622_0045689 Ga0495622_0045689_13_1770 550
227 3300048919 Ga0496116_0052838 Ga0496116_0052838_507_2246 550
228 3300053136 Ga0500559_0035903 Ga0500559_0035903_117_1874 550
229 3300053140 Ga0500573_0000040 Ga0500573_0000040_54230_56014 550
230 iso_pu_bacteria 2821123053 2821130399 550
231 3300003215 JGI25153J46596_10006670 JGI25153J46596_100066702 551
232 3300003775 Ga0055524_1001708 Ga0055524_10017083 551
233 3300003790 Ga0055528_1001816 Ga0055528_10018163 551
234 3300025297 Ga0209758_1000374 Ga0209758_100037425 551
235 3300046452 Ga0495617_018581 Ga0495617_018581_483_2291 551
236 3300046506 Ga0495583_0001175 Ga0495583_0001175_15237_16979 551
237 3300046616 Ga0495668_0055418 Ga0495668_0055418_210_2018 551
238 3300046648 Ga0495611_0012323 Ga0495611_0012323_292_2100 551
239 3300048908 Ga0496105_0000436 Ga0496105_0000436_2003_3790 551
240 3300053105 Ga0500557_000543 Ga0500557_000543_1917_3725 551
241 3300053122 Ga0500608_000645 Ga0500608_000645_9405_11183 551
242 3300053141 Ga0500574_000019 Ga0500574_000019_4994_6772 551
243 3300053177 Ga0500636_0000119 Ga0500636_0000119_5159_6937 551
244 iso_pu_bacteria 2582581299 2585232177 551

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00664

ABC_membrane

ABC transporter transmembrane region

79

345

0.96

PF00005

ABC_tran

ABC transporter

406

555

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2fgk-assembly2.cif.gz_B crystal structure of the abc-cassette e631q mutant of hlyb with bound atp 0.9336 323 548
2ixe-assembly1.cif.gz_A crystal structure of the atpase domain of tap1 with atp (d645n mutant) 0.9271 314 551
5x7k-assembly2.cif.gz_B crystal structure of the nucleotide-binding domain (nbd) of lipb, a abc transporter subunit of a type i secretion system 0.9264 314 549
4k8o-assembly1.cif.gz_A-2 crystal structure of the atpase domain of tap1 with atp (d645n, d651a mutant) 0.9204 314 551
5x7k-assembly1.cif.gz_A crystal structure of the nucleotide-binding domain (nbd) of lipb, a abc transporter subunit of a type i secretion system 0.9189 314 549
ID Description Score Start End Superfamily
5l22B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9603 323 551 3.40.50.300
5l22B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9522 323 551 3.40.50.300
af_P9WQJ7_327_576_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9335 318 551 3.40.50.300
af_A4I2J3_1020_1267_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9321 320 551 3.40.50.300
5x7kB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9264 314 549 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A6N8W048-F1-model_v4 deleted 0.9668 325 549
AF-A0A519NP38-F1-model_v4 ATP-binding cassette domain-containing protein 0.9503 273 549 GO:0005524
GO:0016887
GO:0034040
AF-A0A2M6Z094-F1-model_v4 ABC transporter ATP-binding protein 0.9332 344 551 GO:0005524
GO:0015421
GO:0016887
GO:0090374
AF-A0A7W3T926-F1-model_v4 ATP-binding cassette domain-containing protein 0.926 343 546 GO:0005524
GO:0015421
GO:0016887
AF-S8DPT3-F1-model_v4 ABC transporter domain-containing protein 0.9174 398 551 GO:0005524
GO:0005743
GO:0015421
GO:0016887
GO:0090374

Feature Viewer

pLDDT pTM Quality
79.51 0.75 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map