F351987

General Info

Members Datasets Scaffolds Average Seq Length
239 158 209 379

Family's Representative Sequence

Representative Sequence 3300025292|Ga0209676_1000255|Ga0209676_100025535
Length 380
Sequence MTVQRDTADAVIIGGGFYGSAIAVYLTKTRGLRRVILLEQESELLIRASYNNQARVHNGYHYPRSFTTAFRSRVNLPRFVRDWPQAIKQDFVKLYAIARRNSKVTAKQFERFCYEIGATIKPAEAGLKRLFEPRLIENVFLVEEYAFDSRRLAEWAVKELQDAGVEVHYLTRATAISRSPADKSLAVAIQSKSGDVSSITCRYVFNCTYSGLNQFSGDFPGTQTDLKQEVTEMALMQAPDVLKEIGVTVMDGPFFSMMPFPARGLHTLSHVRYTPHFSWKDEQGVDPYKKLAEYDRATRVDRMVRDIGRYLPSVLDAKYVDSLFEVKTVLVKNEGDDGRPILFEKHAKLPGCYSVLGGKIDNIYDVLEKLETEEFKSSLE

Samples

Sample ID Description Type Environment
1 2124908027 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v1 Metagenome Rhizosphere
2 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
3 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
4 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
5 2511231020 Pseudomonas sp. GM74 Isolate Nodule
6 2511231022 Pseudomonas sp. GM79 Isolate Nodule
7 2511231023 Pseudomonas sp. GM80 Isolate Nodule
8 2599185160 Pseudomonas sp. NFPP25 Isolate Rhizoplane
9 2599185164 Pseudomonas sp. NFPP13 Isolate Rhizoplane
10 2599185165 Pseudomonas sp. NFPP18 Isolate Rhizoplane
11 2599185181 Pseudomonas sp. NFPP17 Isolate Rhizoplane
12 2599185186 Pseudomonas sp. NFPP15 Isolate Rhizoplane
13 2599185189 Pseudomonas sp. NFPP02 Isolate Rhizoplane
14 2599185356 Pseudomonas sp. NFPP14 Isolate Rhizoplane
15 2600255313 Pseudomonas sp. NFPP16 Isolate Rhizoplane
16 2643221638 Duganella sp. Root336D2 Isolate Unclassified
17 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
18 2816332133 Acidovorax radicis 2721A Isolate Unclassified
19 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere
20 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
21 2908446538 Pseudomonas sp. R76 Isolate Rhizosphere
22 2919063839 Pseudomonas pharyngis 1098 Isolate Rhizosphere
23 2919385768 Pseudomonas sp. 2957 Isolate Unclassified
24 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
25 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
26 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
27 3007718800 Pseudomonas fluorescens BW11P2 Isolate Rhizosphere
28 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
29 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
30 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
31 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
32 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
33 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
34 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
35 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
36 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
37 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
38 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
39 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
40 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
43 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
44 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
54 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
55 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
56 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
57 3300016635 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A10 Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
60 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
61 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
62 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
63 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
64 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
76 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
79 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
80 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
81 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
82 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
83 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
84 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
85 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
86 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
87 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
88 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
89 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
90 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
91 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
92 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
93 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
94 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
95 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
96 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
97 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
98 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
99 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
100 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
101 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
102 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
103 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
104 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
105 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
106 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
107 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
108 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
109 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
110 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
111 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
112 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
113 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
114 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
115 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
116 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
117 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
118 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
119 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
120 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
121 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
122 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
123 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
124 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
125 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
126 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
127 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
128 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
129 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
130 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
131 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
132 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
133 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
134 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
135 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
136 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
137 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
138 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
139 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
140 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
141 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
142 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
143 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
144 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
147 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
148 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
149 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
150 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
151 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
152 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
153 3300053126 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere Metagenome Endosphere
154 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
155 639633007 Azoarcus olearius BH72 Isolate Unclassified
156 8054347763 Pseudomonas carnis NWU Be30 Isolate Unclassified
157 8056155041 Pseudomonas farris SWRI79 Isolate Rhizosphere
158 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.03
Metatranscriptomes 0.42
Isolates 12.55

Biome Distribution

Category Percentage (%)
Aerial Root 0.42
Bulb 0
Endosphere 12.97
Nodule 1.26
Rhizoplane 3.35
Rhizosphere 67.36
Stem 0
Stem Tuber 0
Unclassified 14.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS2a_Contig_237 2124908027 Bacteria 31415
2 JGI25154J39366_1000190 3300002738 Bacteria 45605
3 JGI25150J39212_1000274 3300002774 Bacteria 27353
4 rootH2_10077143 3300003320 Bacteria 2416
5 rootL2_10357965 3300003322 Bacteria 1606
6 rootL2_10384062 3300003322 Bacteria 1577
7 rootH1_10174005 3300003323 Bacteria 3967
8 rootH1_10280415 3300003323 Bacteria 2369
9 Ga0055526_1000496 3300003771 Bacteria 31280
10 Ga0055526_1002209 3300003771 Bacteria 13339
11 Ga0055537_1000806 3300003773 Bacteria 15544
12 Ga0055537_1001860 3300003773 Bacteria 7614
13 Ga0055524_1001544 3300003775 Bacteria 13025
14 Ga0055524_1009722 3300003775 Bacteria 3886
15 Ga0055534_1000329 3300003784 Bacteria 31280
16 Ga0055530_10000283 3300003791 Bacteria 46150
17 Ga0065714_10002315 3300005288 Bacteria 25390
18 Ga0065714_10002559 3300005288 Bacteria 17358
19 Ga0065714_10003006 3300005288 Bacteria 10499
20 Ga0065714_10005092 3300005288 Bacteria 5306
21 Ga0065714_10066213 3300005288 Bacteria 7350
22 Ga0065712_10068142 3300005290 Bacteria 13939
23 Ga0070669_100030754 3300005353 Bacteria 3875
24 Ga0075364_10000388 3300006051 Bacteria 21839
25 Ga0075364_10018899 3300006051 Bacteria 4321
26 Ga0105251_10000284 3300009011 Bacteria 50987
27 Ga0105251_10000893 3300009011 Bacteria 26707
28 Ga0105251_10018328 3300009011 Bacteria 3725
29 Ga0105251_10029847 3300009011 Bacteria 2743
30 Ga0105244_10000638 3300009036 Bacteria 30900
31 Ga0105244_10061956 3300009036 Bacteria 1881
32 Ga0105250_10000348 3300009092 Bacteria 35617
33 Ga0105250_10000746 3300009092 Bacteria 19826
34 Ga0105250_10008314 3300009092 Bacteria 4416
35 Ga0105237_10202188 3300009545 Bacteria 1987
36 Ga0157373_10000759 3300013100 Bacteria 25031
37 Ga0157371_10002469 3300013102 Bacteria 17608
38 Ga0157371_10011536 3300013102 Bacteria 6795
39 Ga0157371_10123980 3300013102 Bacteria 1837
40 Ga0157370_10003235 3300013104 Bacteria 19221
41 Ga0157370_10011642 3300013104 Bacteria 9183
42 Ga0157370_10021727 3300013104 Bacteria 6392
43 Ga0157369_10048951 3300013105 Bacteria 4584
44 Ga0163162_10000688 3300013306 Bacteria 31284
45 Ga0157372_10116663 3300013307 Bacteria 3061
46 Ga0157375_10010776 3300013308 Bacteria 8053
47 Ga0182008_10000650 3300014497 Bacteria 25384
48 Ga0182008_10001249 3300014497 Bacteria 17458
49 Ga0182008_10009213 3300014497 Bacteria 5337
50 Ga0182006_1013355 3300015261 Bacteria 3566
51 Ga0182007_10000296 3300015262 Bacteria 32264
52 Ga0182007_10000636 3300015262 Bacteria 20375
53 Ga0182005_1000014 3300015265 Bacteria 389763
54 Ga0182005_1000325 3300015265 Bacteria 28280
55 Ga0182005_1000529 3300015265 Bacteria 19383
56 Ga0182005_1000970 3300015265 Bacteria 12455
57 Ga0183361_10022 3300016635 Bacteria 112719
58 Ga0163161_10124062 3300017792 Bacteria 1943
59 Ga0207425_1000050 3300025245 Bacteria 177008
60 Ga0209646_1000075 3300025246 Bacteria 221755
61 Ga0209026_1006606 3300025250 Bacteria 2801
62 Ga0209759_1001109 3300025256 Bacteria 17383
63 Ga0209129_1001335 3300025258 Bacteria 13951
64 Ga0209565_1000348 3300025263 Bacteria 40662
65 Ga0209565_1000421 3300025263 Bacteria 34378
66 Ga0209565_1000439 3300025263 Bacteria 33341
67 Ga0209565_1001005 3300025263 Bacteria 14486
68 Ga0209673_1002992 3300025273 Bacteria 10520
69 Ga0209675_1000418 3300025291 Bacteria 34762
70 Ga0209676_1000255 3300025292 Bacteria 112911
71 Ga0209564_1001027 3300025295 Bacteria 34378
72 Ga0209564_1001062 3300025295 Bacteria 33341
73 Ga0209050_1000271 3300025298 Bacteria 110802
74 Ga0209256_1000757 3300025299 Bacteria 42054
75 Ga0209256_1005349 3300025299 Bacteria 7437
76 Ga0209256_1008277 3300025299 Bacteria 4862
77 Ga0207696_1000161 3300025711 Bacteria 109070
78 Ga0207655_1000857 3300025728 Bacteria 32446
79 Ga0207713_1000344 3300025735 Bacteria 50995
80 Ga0207713_1000614 3300025735 Bacteria 35058
81 Ga0207713_1002635 3300025735 Bacteria 12899
82 Ga0207713_1028877 3300025735 Bacteria 2494
83 Ga0207681_10065901 3300025923 Bacteria 2505
84 Ga0265331_10000024 3300031250 Bacteria 235118
85 Ga0265327_10000079 3300031251 Bacteria 206892
86 Ga0265327_10001446 3300031251 Bacteria 29886
87 Ga0395905_0003906 3300037471 Bacteria 15715
88 Ga0439438_000275 3300041405 Bacteria 23167
89 Ga0439447_000209 3300041407 Bacteria 20602
90 Ga0439447_006675 3300041407 Bacteria 3724
91 Ga0439466_0001149 3300041411 Bacteria 10290
92 Ga0439432_011523 3300042006 Bacteria 3046
93 Ga0439451_000343 3300042009 Bacteria 9025
94 Ga0439452_001021 3300042010 Bacteria 12401
95 Ga0439463_002335 3300042016 Bacteria 4840
96 Ga0450905_000007 3300042142 Bacteria 28289
97 Ga0439460_0000071 3300042461 Bacteria 15336
98 Ga0495617_000086 3300046452 Bacteria 67731
99 Ga0495617_000200 3300046452 Bacteria 37820
100 Ga0495603_0000188 3300046455 Bacteria 32204
101 Ga0495591_000430 3300046458 Bacteria 34469
102 Ga0495638_0000583 3300046460 Bacteria 41251
103 Ga0495638_0000868 3300046460 Bacteria 31437
104 Ga0495638_0078124 3300046460 Bacteria 2014
105 Ga0495651_0097939 3300046462 Bacteria 2189
106 Ga0495653_0000603 3300046463 Bacteria 27534
107 Ga0495653_0020010 3300046463 Bacteria 5424
108 Ga0495650_0001217 3300046471 Bacteria 26985
109 Ga0495650_0023627 3300046471 Bacteria 2923
110 Ga0495580_0112428 3300046472 Bacteria 1891
111 Ga0495605_0000672 3300046474 Bacteria 25764
112 Ga0495605_0009896 3300046474 Bacteria 5346
113 Ga0495584_0059795 3300046491 Bacteria 1916
114 Ga0495585_0000671 3300046492 Bacteria 31409
115 Ga0495585_0000992 3300046492 Bacteria 23785
116 Ga0495585_0001976 3300046492 Bacteria 15273
117 Ga0495594_0012069 3300046499 Bacteria 4498
118 Ga0495596_0000781 3300046500 Bacteria 19375
119 Ga0495607_0000639 3300046501 Bacteria 34018
120 Ga0495607_0000882 3300046501 Bacteria 27974
121 Ga0495607_0081730 3300046501 Bacteria 1774
122 Ga0495583_0002001 3300046506 Bacteria 18656
123 Ga0495606_0001551 3300046507 Bacteria 30264
124 Ga0495608_0032218 3300046511 Bacteria 3543
125 Ga0495630_0052325 3300046517 Bacteria 3057
126 Ga0495631_0000299 3300046518 Bacteria 34689
127 Ga0495631_0003654 3300046518 Bacteria 8399
128 Ga0495632_0003475 3300046519 Bacteria 11144
129 Ga0495637_0003599 3300046520 Bacteria 8206
130 Ga0495643_0000897 3300046522 Bacteria 31700
131 Ga0495643_0001100 3300046522 Bacteria 26910
132 Ga0495643_0007806 3300046522 Bacteria 6845
133 Ga0495648_0000742 3300046524 Bacteria 34816
134 Ga0495648_0000821 3300046524 Bacteria 32785
135 Ga0495648_0086334 3300046524 Unclassified 1770
136 Ga0495666_0000555 3300046526 Bacteria 16646
137 Ga0495654_0000487 3300046530 Bacteria 32718
138 Ga0495654_0002608 3300046530 Bacteria 11491
139 Ga0495654_0010939 3300046530 Bacteria 4930
140 Ga0495587_0000318 3300046536 Bacteria 34260
141 Ga0495609_0000262 3300046538 Bacteria 49441
142 Ga0495609_0000689 3300046538 Bacteria 26028
143 Ga0495609_0007387 3300046538 Bacteria 5492
144 Ga0495597_0000305 3300046542 Bacteria 44060
145 Ga0495622_0003438 3300046557 Bacteria 7465
146 Ga0495622_0031968 3300046557 Bacteria 2458
147 Ga0495633_0001202 3300046558 Bacteria 20822
148 Ga0495668_0000689 3300046616 Bacteria 40549
149 Ga0495611_0000562 3300046648 Bacteria 21465
150 Ga0495611_0006970 3300046648 Bacteria 4802
151 Ga0495635_0000131 3300046663 Bacteria 45264
152 Ga0495623_0001154 3300046679 Bacteria 17868
153 Ga0495670_0000159 3300046691 Bacteria 29368
154 Ga0495671_0001364 3300046692 Bacteria 16559
155 Ga0495589_0000578 3300046794 Bacteria 25244
156 Ga0495589_0000809 3300046794 Bacteria 19813
157 Ga0495600_0015625 3300046809 Bacteria 4805
158 Ga0495604_0046681 3300047317 Bacteria 3377
159 Ga0495636_0000132 3300047318 Bacteria 29973
160 Ga0495674_0004354 3300047319 Bacteria 13608
161 Ga0495672_0000378 3300047320 Bacteria 55187
162 Ga0495672_0046293 3300047320 Bacteria 2595
163 Ga0495672_0083307 3300047320 Unclassified 1776
164 Ga0495676_0000157 3300047321 Bacteria 52412
165 Ga0495680_0000664 3300047322 Bacteria 38534
166 Ga0495683_0000320 3300047323 Bacteria 40260
167 Ga0495683_0000619 3300047323 Bacteria 26557
168 Ga0495683_0001295 3300047323 Bacteria 16901
169 Ga0495675_0027134 3300047444 Bacteria 3650
170 Ga0495677_0016641 3300047445 Unclassified 2669
171 Ga0495673_0000903 3300047469 Bacteria 27211
172 Ga0495673_0007082 3300047469 Bacteria 6499
173 Ga0495673_0027039 3300047469 Unclassified 2734
174 Ga0495681_0004449 3300047470 Bacteria 9560
175 Ga0495681_0004815 3300047470 Bacteria 9144
176 Ga0495593_0000168 3300047673 Bacteria 33647
177 Ga0495626_0000621 3300048091 Bacteria 34549
178 Ga0495626_0000703 3300048091 Bacteria 31806
179 Ga0495626_0009082 3300048091 Bacteria 5393
180 Ga0496116_0004915 3300048919 Bacteria 12594
181 Ga0496117_0002337 3300048920 Bacteria 24254
182 Ga0496117_0003251 3300048920 Bacteria 19125
183 Ga0496117_0014475 3300048920 Bacteria 6792
184 Ga0496118_0001738 3300048921 Bacteria 31643
185 Ga0496118_0002512 3300048921 Bacteria 24623
186 Ga0496118_0010986 3300048921 Bacteria 8896
187 Ga0496118_0016450 3300048921 Bacteria 6785
188 Ga0496121_0001685 3300048924 Bacteria 36349
189 Ga0496121_0002454 3300048924 Bacteria 28322
190 Ga0496122_0000847 3300048925 Bacteria 57788
191 Ga0496122_0003546 3300048925 Bacteria 20414
192 Ga0496123_0000794 3300048926 Bacteria 50999
193 Ga0496124_0003860 3300048927 Bacteria 17927
194 Ga0496124_0011728 3300048927 Bacteria 8743
195 Ga0496124_0017256 3300048927 Bacteria 6809
196 Ga0496125_0001710 3300048928 Bacteria 30576
197 Ga0501310_000805 3300049130 Bacteria 2787
198 Ga0495682_0000080 3300049460 Bacteria 84736
199 Ga0495682_0000466 3300049460 Bacteria 27939
200 Ga0495682_0011220 3300049460 Bacteria 3451
201 Ga0495682_0069740 3300049460 Bacteria 1265
202 Ga0501227_003287 3300049665 Bacteria 3510
203 Ga0501080_0181566 3300049742 Bacteria 1936
204 Ga0501044_0034034 3300049823 Bacteria 5348
205 nmdc:mga00v17_367_c1 3300050491 Bacteria 25605
206 Ga0500618_002755 3300053125 Bacteria 6391
207 Ga0500618_002927 3300053125 Bacteria 6110
208 Ga0500621_000036 3300053126 Bacteria 25015
209 Ga0500636_0001254 3300053177 Bacteria 13752

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049460 Ga0495682_0069740 Ga0495682_0069740_19_1056 339
2 iso_pu_bacteria 2901300506 2901305522 345
3 iso_pu_bacteria 2510065055 2510294512 350
4 3300031250 Ga0265331_10000024 Ga0265331_10000024238 351
5 3300031251 Ga0265327_10000079 Ga0265327_100000797 351
6 3300003323 rootH1_10280415 rootH1_102804151 354
7 3300013102 Ga0157371_10002469 Ga0157371_1000246919 354
8 3300013307 Ga0157372_10116663 Ga0157372_101166632 354
9 3300048927 Ga0496124_0003860 Ga0496124_0003860_14625_15791 358
10 3300048925 Ga0496122_0000847 Ga0496122_0000847_27495_28619 360
11 3300002774 JGI25150J39212_1000274 JGI25150J39212_100027425 361
12 3300003771 Ga0055526_1000496 Ga0055526_10004963 361
13 3300003773 Ga0055537_1000806 Ga0055537_100080615 361
14 3300003775 Ga0055524_1001544 Ga0055524_100154413 361
15 3300003775 Ga0055524_1009722 Ga0055524_10097223 361
16 3300003784 Ga0055534_1000329 Ga0055534_10003293 361
17 3300015265 Ga0182005_1000014 Ga0182005_100001451 361
18 3300025245 Ga0207425_1000050 Ga0207425_100005089 361
19 3300025258 Ga0209129_1001335 Ga0209129_10013357 361
20 3300025263 Ga0209565_1000421 Ga0209565_10004217 361
21 3300025291 Ga0209675_1000418 Ga0209675_10004187 361
22 3300025295 Ga0209564_1001027 Ga0209564_10010277 361
23 3300025299 Ga0209256_1000757 Ga0209256_10007577 361
24 iso_pu_bacteria 2510065053 2510281208 364
25 iso_pu_bacteria 2510065058 2510309356 364
26 iso_pu_bacteria 2773857672 2774131773 364
27 iso_pu_bacteria 2974298342 2974300886 364
28 iso_pu_bacteria 2984499530 2984503358 364
29 3300015265 Ga0182005_1000529 Ga0182005_10005297 367
30 3300009011 Ga0105251_10018328 Ga0105251_100183282 368
31 3300009036 Ga0105244_10061956 Ga0105244_100619562 368
32 3300013102 Ga0157371_10123980 Ga0157371_101239802 368
33 3300013105 Ga0157369_10048951 Ga0157369_100489515 368
34 3300046452 Ga0495617_000086 Ga0495617_000086_53625_54737 370
35 3300046492 Ga0495585_0000992 Ga0495585_0000992_14189_15301 370
36 3300046538 Ga0495609_0000262 Ga0495609_0000262_4126_5238 370
37 3300046558 Ga0495633_0001202 Ga0495633_0001202_9018_10130 370
38 3300046692 Ga0495671_0001364 Ga0495671_0001364_6761_7873 370
39 3300049460 Ga0495682_0000080 Ga0495682_0000080_71483_72595 370
40 3300046460 Ga0495638_0000868 Ga0495638_0000868_18092_19210 371
41 3300006051 Ga0075364_10000388 Ga0075364_100003883 372
42 3300006051 Ga0075364_10018899 Ga0075364_100188993 372
43 3300009011 Ga0105251_10000284 Ga0105251_1000028420 372
44 3300009092 Ga0105250_10000348 Ga0105250_1000034825 372
45 3300025711 Ga0207696_1000161 Ga0207696_100016122 372
46 3300025735 Ga0207713_1000344 Ga0207713_100034420 372
47 3300050491 nmdc:mga00v17_367_c1 nmdc:mga00v17_367_c1_22693_23817 372
48 iso_pu_bacteria 2643221638 2644216685 372
49 iso_pu_bacteria 2816332133 2816475872 372
50 3300003320 rootH2_10077143 rootH2_100771432 373
51 3300003322 rootL2_10357965 rootL2_103579652 373
52 3300005288 Ga0065714_10066213 Ga0065714_100662136 373
53 3300009036 Ga0105244_10000638 Ga0105244_1000063824 373
54 3300014497 Ga0182008_10009213 Ga0182008_100092134 373
55 3300015262 Ga0182007_10000636 Ga0182007_1000063614 373
56 3300025728 Ga0207655_1000857 Ga0207655_10008573 373
57 3300031251 Ga0265327_10001446 Ga0265327_100014465 373
58 3300037471 Ga0395905_0003906 Ga0395905_0003906_10292_11416 373
59 3300046474 Ga0495605_0009896 Ga0495605_0009896_2685_3818 373
60 3300046491 Ga0495584_0059795 Ga0495584_0059795_691_1824 373
61 3300046492 Ga0495585_0000671 Ga0495585_0000671_20178_21311 373
62 3300046500 Ga0495596_0000781 Ga0495596_0000781_16904_18037 373
63 3300046501 Ga0495607_0081730 Ga0495607_0081730_428_1552 373
64 3300046518 Ga0495631_0003654 Ga0495631_0003654_5397_6530 373
65 3300046522 Ga0495643_0007806 Ga0495643_0007806_960_2093 373
66 3300046524 Ga0495648_0000742 Ga0495648_0000742_5892_7013 373
67 3300046524 Ga0495648_0086334 Ga0495648_0086334_497_1630 373
68 3300046538 Ga0495609_0007387 Ga0495609_0007387_1314_2447 373
69 3300046648 Ga0495611_0000562 Ga0495611_0000562_10610_11734 373
70 3300047320 Ga0495672_0083307 Ga0495672_0083307_244_1377 373
71 3300047445 Ga0495677_0016641 Ga0495677_0016641_1419_2552 373
72 3300047469 Ga0495673_0000903 Ga0495673_0000903_13381_14505 373
73 3300047469 Ga0495673_0027039 Ga0495673_0027039_459_1592 373
74 3300048091 Ga0495626_0009082 Ga0495626_0009082_3790_4923 373
75 3300048921 Ga0496118_0001738 Ga0496118_0001738_17866_18987 373
76 3300048925 Ga0496122_0003546 Ga0496122_0003546_6637_7758 373
77 3300048926 Ga0496123_0000794 Ga0496123_0000794_16645_17766 373
78 3300013104 Ga0157370_10021727 Ga0157370_100217272 374
79 3300048919 Ga0496116_0004915 Ga0496116_0004915_6578_7705 374
80 3300048920 Ga0496117_0014475 Ga0496117_0014475_2555_3682 374
81 3300048921 Ga0496118_0016450 Ga0496118_0016450_3178_4305 374
82 3300048927 Ga0496124_0017256 Ga0496124_0017256_3101_4228 374
83 iso_pu_bacteria 2511231022 2511362935 374
84 iso_pu_bacteria 2599185160 2599358272 375
85 iso_pu_bacteria 2599185164 2599383437 375
86 iso_pu_bacteria 2599185165 2599389884 375
87 iso_pu_bacteria 2599185181 2599465087 375
88 iso_pu_bacteria 2599185186 2599493998 375
89 iso_pu_bacteria 2599185356 2600217821 375
90 iso_pu_bacteria 2600255313 2601777988 375
91 iso_pu_bacteria 2885080285 2885083333 375
92 iso_pu_bacteria 639633007 639788759 375
93 iso_pu_bacteria 8057798959 8057805170 375
94 3300009545 Ga0105237_10202188 Ga0105237_102021882 376
95 3300025735 Ga0207713_1002635 Ga0207713_10026355 376
96 3300046471 Ga0495650_0023627 Ga0495650_0023627_582_1715 376
97 3300046499 Ga0495594_0012069 Ga0495594_0012069_1408_2541 376
98 3300046506 Ga0495583_0002001 Ga0495583_0002001_9144_10277 376
99 3300046520 Ga0495637_0003599 Ga0495637_0003599_5131_6264 376
100 3300046542 Ga0495597_0000305 Ga0495597_0000305_8380_9513 376
101 3300047470 Ga0495681_0004815 Ga0495681_0004815_6000_7133 376
102 3300049460 Ga0495682_0000466 Ga0495682_0000466_18962_20092 376
103 3300053125 Ga0500618_002755 Ga0500618_002755_2997_4130 376
104 3300046460 Ga0495638_0078124 Ga0495638_0078124_21_1166 377
105 3300046519 Ga0495632_0003475 Ga0495632_0003475_4372_5517 377
106 3300047320 Ga0495672_0046293 Ga0495672_0046293_1417_2562 377
107 3300047470 Ga0495681_0004449 Ga0495681_0004449_6769_7914 377
108 iso_pu_bacteria 2908446538 2908451157 377
109 iso_pu_bacteria 2961064222 2961065466 377
110 3300002738 JGI25154J39366_1000190 JGI25154J39366_100019024 378
111 3300003771 Ga0055526_1002209 Ga0055526_10022095 378
112 3300003773 Ga0055537_1001860 Ga0055537_10018606 378
113 3300003791 Ga0055530_10000283 Ga0055530_1000028338 378
114 3300025246 Ga0209646_1000075 Ga0209646_100007537 378
115 3300025250 Ga0209026_1006606 Ga0209026_10066062 378
116 3300025256 Ga0209759_1001109 Ga0209759_10011096 378
117 3300025263 Ga0209565_1000439 Ga0209565_10004395 378
118 3300025263 Ga0209565_1001005 Ga0209565_10010057 378
119 3300025273 Ga0209673_1002992 Ga0209673_10029924 378
120 3300025292 Ga0209676_1000255 Ga0209676_100025535 378
121 3300025295 Ga0209564_1001062 Ga0209564_10010625 378
122 3300025298 Ga0209050_1000271 Ga0209050_100027175 378
123 3300025299 Ga0209256_1005349 Ga0209256_10053495 378
124 3300025299 Ga0209256_1008277 Ga0209256_10082772 378
125 3300046492 Ga0495585_0001976 Ga0495585_0001976_5054_6190 378
126 3300046691 Ga0495670_0000159 Ga0495670_0000159_20476_21612 378
127 3300049665 Ga0501227_003287 Ga0501227_003287_512_1648 378
128 3300049742 Ga0501080_0181566 Ga0501080_0181566_37_1176 378
129 3300049823 Ga0501044_0034034 Ga0501044_0034034_2643_3782 378
130 3300003322 rootL2_10384062 rootL2_103840622 379
131 3300013100 Ga0157373_10000759 Ga0157373_1000075911 379
132 3300025263 Ga0209565_1000348 Ga0209565_100034818 379
133 3300049130 Ga0501310_000805 Ga0501310_000805_1060_2199 379
134 3300048920 Ga0496117_0002337 Ga0496117_0002337_17722_18867 380
135 3300048921 Ga0496118_0002512 Ga0496118_0002512_17775_18920 380
136 iso_pu_bacteria 2919385768 2919388042 380
137 3300047321 Ga0495676_0000157 Ga0495676_0000157_38133_39290 381
138 3300047323 Ga0495683_0000320 Ga0495683_0000320_17148_18305 381
139 iso_pu_bacteria 2511231023 2511368073 381
140 iso_pu_bacteria 2919063839 2919068924 381
141 iso_pu_bacteria 3007718800 3007718944 381
142 3300003323 rootH1_10174005 rootH1_101740053 383
143 3300005288 Ga0065714_10002559 Ga0065714_1000255910 383
144 3300005288 Ga0065714_10003006 Ga0065714_100030062 383
145 3300009011 Ga0105251_10000893 Ga0105251_1000089313 383
146 3300009011 Ga0105251_10029847 Ga0105251_100298472 383
147 3300009092 Ga0105250_10008314 Ga0105250_100083142 383
148 3300013104 Ga0157370_10003235 Ga0157370_100032356 383
149 3300013104 Ga0157370_10011642 Ga0157370_100116423 383
150 3300014497 Ga0182008_10001249 Ga0182008_100012498 383
151 3300015261 Ga0182006_1013355 Ga0182006_10133552 383
152 3300015262 Ga0182007_10000296 Ga0182007_1000029620 383
153 3300015265 Ga0182005_1000325 Ga0182005_10003259 383
154 3300017792 Ga0163161_10124062 Ga0163161_101240622 383
155 3300025735 Ga0207713_1000614 Ga0207713_100061420 383
156 3300025735 Ga0207713_1028877 Ga0207713_10288772 383
157 3300041407 Ga0439447_006675 Ga0439447_006675_92_1264 383
158 3300046455 Ga0495603_0000188 Ga0495603_0000188_7887_9068 383
159 3300046458 Ga0495591_000430 Ga0495591_000430_26694_27875 383
160 3300046460 Ga0495638_0000583 Ga0495638_0000583_29042_30223 383
161 3300046462 Ga0495651_0097939 Ga0495651_0097939_965_2137 383
162 3300046463 Ga0495653_0020010 Ga0495653_0020010_1712_2893 383
163 3300046501 Ga0495607_0000882 Ga0495607_0000882_3937_5118 383
164 3300046507 Ga0495606_0001551 Ga0495606_0001551_6311_7492 383
165 3300046511 Ga0495608_0032218 Ga0495608_0032218_1911_3083 383
166 3300046517 Ga0495630_0052325 Ga0495630_0052325_1590_2771 383
167 3300046524 Ga0495648_0000821 Ga0495648_0000821_6228_7409 383
168 3300046526 Ga0495666_0000555 Ga0495666_0000555_13981_15162 383
169 3300046530 Ga0495654_0000487 Ga0495654_0000487_6244_7425 383
170 3300046530 Ga0495654_0010939 Ga0495654_0010939_2764_3936 383
171 3300046536 Ga0495587_0000318 Ga0495587_0000318_20719_21900 383
172 3300046557 Ga0495622_0031968 Ga0495622_0031968_622_1803 383
173 3300046663 Ga0495635_0000131 Ga0495635_0000131_11481_12662 383
174 3300046679 Ga0495623_0001154 Ga0495623_0001154_3547_4728 383
175 3300046794 Ga0495589_0000809 Ga0495589_0000809_6686_7867 383
176 3300046809 Ga0495600_0015625 Ga0495600_0015625_3283_4464 383
177 3300047317 Ga0495604_0046681 Ga0495604_0046681_904_2085 383
178 3300047319 Ga0495674_0004354 Ga0495674_0004354_8934_10115 383
179 3300047322 Ga0495680_0000664 Ga0495680_0000664_5738_6919 383
180 3300047323 Ga0495683_0000619 Ga0495683_0000619_5962_7143 383
181 3300047323 Ga0495683_0001295 Ga0495683_0001295_6203_7384 383
182 3300047444 Ga0495675_0027134 Ga0495675_0027134_997_2178 383
183 3300047673 Ga0495593_0000168 Ga0495593_0000168_15508_16689 383
184 3300048091 Ga0495626_0000621 Ga0495626_0000621_27127_28308 383
185 3300048924 Ga0496121_0001685 Ga0496121_0001685_23981_25162 383
186 3300048927 Ga0496124_0011728 Ga0496124_0011728_5448_6629 383
187 3300053126 Ga0500621_000036 Ga0500621_000036_18634_19815 383
188 3300053177 Ga0500636_0001254 Ga0500636_0001254_5454_6626 383
189 iso_pu_bacteria 2511231020 2511349711 383
190 iso_pu_bacteria 2599185189 2599507478 383
191 iso_pu_bacteria 8054347763 8054352025 383
192 iso_pu_bacteria 8056155041 8056155073 383
193 3300046522 Ga0495643_0000897 Ga0495643_0000897_19070_20227 384
194 3300048928 Ga0496125_0001710 Ga0496125_0001710_43_1200 384
195 2124908027 MRS2a_Contig_237 MRS2a_00139440 385
196 3300005288 Ga0065714_10002315 Ga0065714_100023152 385
197 3300005288 Ga0065714_10005092 Ga0065714_100050923 385
198 3300005290 Ga0065712_10068142 Ga0065712_100681422 385
199 3300005353 Ga0070669_100030754 Ga0070669_1000307544 385
200 3300009092 Ga0105250_10000746 Ga0105250_1000074617 385
201 3300013102 Ga0157371_10011536 Ga0157371_100115363 385
202 3300013306 Ga0163162_10000688 Ga0163162_1000068825 385
203 3300013308 Ga0157375_10010776 Ga0157375_100107766 385
204 3300014497 Ga0182008_10000650 Ga0182008_100006504 385
205 3300015265 Ga0182005_1000970 Ga0182005_10009709 385
206 3300016635 Ga0183361_10022 Ga0183361_1002294 385
207 3300025923 Ga0207681_10065901 Ga0207681_100659013 385
208 3300041405 Ga0439438_000275 Ga0439438_000275_17833_18993 385
209 3300041407 Ga0439447_000209 Ga0439447_000209_16524_17684 385
210 3300041411 Ga0439466_0001149 Ga0439466_0001149_3126_4286 385
211 3300042006 Ga0439432_011523 Ga0439432_011523_461_1621 385
212 3300042009 Ga0439451_000343 Ga0439451_000343_5762_6922 385
213 3300042010 Ga0439452_001021 Ga0439452_001021_8283_9443 385
214 3300042016 Ga0439463_002335 Ga0439463_002335_437_1597 385
215 3300042142 Ga0450905_000007 Ga0450905_000007_6162_7319 385
216 3300042461 Ga0439460_0000071 Ga0439460_0000071_9652_10812 385
217 3300046452 Ga0495617_000200 Ga0495617_000200_24989_26149 385
218 3300046463 Ga0495653_0000603 Ga0495653_0000603_4278_5435 385
219 3300046471 Ga0495650_0001217 Ga0495650_0001217_4646_5806 385
220 3300046472 Ga0495580_0112428 Ga0495580_0112428_561_1721 385
221 3300046474 Ga0495605_0000672 Ga0495605_0000672_3412_4572 385
222 3300046501 Ga0495607_0000639 Ga0495607_0000639_24974_26134 385
223 3300046518 Ga0495631_0000299 Ga0495631_0000299_16392_17555 385
224 3300046522 Ga0495643_0001100 Ga0495643_0001100_21658_22818 385
225 3300046530 Ga0495654_0002608 Ga0495654_0002608_6190_7350 385
226 3300046538 Ga0495609_0000689 Ga0495609_0000689_21319_22479 385
227 3300046557 Ga0495622_0003438 Ga0495622_0003438_4721_5878 385
228 3300046616 Ga0495668_0000689 Ga0495668_0000689_28848_30005 385
229 3300046648 Ga0495611_0006970 Ga0495611_0006970_365_1525 385
230 3300046794 Ga0495589_0000578 Ga0495589_0000578_20673_21833 385
231 3300047318 Ga0495636_0000132 Ga0495636_0000132_4580_5740 385
232 3300047320 Ga0495672_0000378 Ga0495672_0000378_29052_30212 385
233 3300047469 Ga0495673_0007082 Ga0495673_0007082_3974_5134 385
234 3300048091 Ga0495626_0000703 Ga0495626_0000703_8559_9716 385
235 3300048920 Ga0496117_0003251 Ga0496117_0003251_16862_18019 385
236 3300048921 Ga0496118_0010986 Ga0496118_0010986_3137_4294 385
237 3300048924 Ga0496121_0002454 Ga0496121_0002454_20977_22134 385
238 3300049460 Ga0495682_0011220 Ga0495682_0011220_1466_2626 385
239 3300053125 Ga0500618_002927 Ga0500618_002927_3960_5135 385

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

12

83

0.79

PF01266

DAO

FAD dependent oxidoreductase

9

359

0.64

Structural Annotation

Top 5 Hits

ID Description Score Start End
6qss-assembly1.cif.gz_D crystal structure of ignicoccus islandicus malate dehydrogenase co-crystallized with 10 mm tb-xo4 0.884 7 38
1guz-assembly1.cif.gz_C structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases 0.8669 7 41
1guz-assembly1.cif.gz_D structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases 0.8643 7 41
1guz-assembly1.cif.gz_B structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases 0.8629 7 41
3kd9-assembly2.cif.gz_C-2 crystal structure of pyridine nucleotide disulfide oxidoreductase from pyrococcus horikoshii 0.8516 6 209
ID Description Score Start End Superfamily
5l1nB02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8926 7 44 3.50.50.60
2ivdA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8684 7 206 3.50.50.60
af_A1Z9F8_47_191_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.86 7 37 3.40.50.720
4a73C01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8418 7 37 3.40.50.720
6ihdA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8397 8 39 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3S0UEI6-F1-model_v4 FAD-binding oxidoreductase 0.9627 6 371 GO:0016614
AF-A0A257QQ76-F1-model_v4 D amino acid oxidase (DAO) family protein 0.9515 6 222 GO:0016020
GO:0016614
AF-A0A3S0UEI6-F1-model_v4 FAD-binding oxidoreductase 0.95 6 371 GO:0016614
AF-A0A2D7RS23-F1-model_v4 D amino acid oxidase (DAO) family protein 0.949 7 369
AF-A0A1I7ZKB1-F1-model_v4 DAO domain-containing protein 0.9447 1 293 GO:0016020

Feature Viewer

pLDDT pTM Quality
86.45 0.87 High
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Predicted Structure (AlphaFold2)

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