F337064

General Info

Members Datasets Scaffolds Average Seq Length
224 89 448 394

Family's Representative Sequence

Representative Sequence 3300046492|Ga0495585_0045271|Ga0495585_0045271_992_2248
Length 418
Sequence MKRNENGPLIMQQGEFLPGGVLHDVASIQNIGAVPTILETVAATTGLGFVCIARVTQDSWTNCAVLDKLNFGLKVGDGLDVTTTLCEEVRDTGKAVIIDCVSQDAVYCDHHTPRIYGFQSYISIPIFRQDGAYFGTLCGLDPRPMTLSTPAIVSSMTLFAQLISLQLDADRQLADTRSLLADANETAELREQFIAVLGHDLRTPLGSILMAVEVARRKQPDAGMQALLDHIGRSAHRISALVDDVVDFTRGRMGGGIALELRRDDTLHLAFEQVIEELRGVHPGRRIDARLQPIPTLLCDRGRMGQMLSNLLNNALVHGDPAKPVEVAAWQADGVFQLTVTNAGPRIPDEVKRQLFKPFWRGSAKVAREGLGLGLFIVSEIARSHGGSIDVITSDAATSFIYQVRKPDFTCGLSSGAQ

Samples

Sample ID Description Type Environment
1 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
2 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
5 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
6 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
7 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
8 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
9 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
10 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
11 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
16 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
17 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
18 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
19 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
20 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
21 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
22 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
23 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
24 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
25 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
26 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
27 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
28 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
29 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
30 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
31 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
32 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
33 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
34 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
35 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
36 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
37 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
38 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
39 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
40 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
41 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
42 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
43 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
44 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
45 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
46 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
47 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
48 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
49 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
50 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
51 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
52 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
53 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
54 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
55 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
56 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
57 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
58 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
59 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
60 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
61 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
62 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
63 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
64 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
65 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
66 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
67 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
68 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
69 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
70 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
71 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
72 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
73 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
74 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
75 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
76 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
77 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
78 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
79 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
80 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
81 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
82 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
83 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
84 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
85 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
86 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
87 2857553236 Duganella sp. R-74557 Isolate Unclassified
88 2857558681 Duganella sp. R-74565 Isolate Unclassified
89 2904424332 Duganella sp. 1411 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.66
Metatranscriptomes 0
Isolates 1.34

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.23
Nodule 0.45
Rhizoplane 4.91
Rhizosphere 89.73
Stem 0
Stem Tuber 0
Unclassified 1.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495585_0045271 3300046492 Bacteria 2456
2 Ga0065165_1002989 3300005262 Bacteria 12832
3 Ga0070668_100020640 3300005347 Bacteria 4974
4 Ga0070669_100035535 3300005353 Bacteria 3611
5 Ga0070672_100103861 3300005543 Bacteria 2308
6 Ga0070665_100000008 3300005548 Bacteria 606341
7 Ga0068861_100056343 3300005719 Bacteria 3000
8 Ga0079104_1026083 3300006946 Bacteria 1515
9 Ga0157371_10000001 3300013102 Bacteria 1162285
10 Ga0182008_10021901 3300014497 Bacteria 3278
11 Ga0207681_10064979 3300025923 Bacteria 2521
12 Ga0207691_10162022 3300025940 Bacteria 1962
13 Ga0207668_10027157 3300025972 Bacteria 3727
14 Ga0268266_10000016 3300028379 Bacteria 629101
15 Ga0268265_10093678 3300028380 Bacteria 2407
16 Ga0316180_1119664 3300030736 Bacteria 1447
17 Ga0307510_10109085 3300033180 Unclassified 2519
18 Ga0450904_000388 3300042139 Bacteria 9121
19 Ga0450906_019091 3300042145 Bacteria 1229
20 Ga0495617_000043 3300046452 Bacteria 121136
21 Ga0495617_001783 3300046452 Bacteria 9187
22 Ga0495627_000008 3300046453 Bacteria 572150
23 Ga0495627_000286 3300046453 Bacteria 50832
24 Ga0495627_013595 3300046453 Bacteria 2860
25 Ga0495592_0045073 3300046454 Bacteria 3292
26 Ga0495590_0000049 3300046457 Bacteria 113002
27 Ga0495591_000362 3300046458 Bacteria 39501
28 Ga0495591_043542 3300046458 Bacteria 1262
29 Ga0495638_0080674 3300046460 Unclassified 1976
30 Ga0495651_0011677 3300046462 Bacteria 6752
31 Ga0495650_0000108 3300046471 Bacteria 200369
32 Ga0495650_0035631 3300046471 Bacteria 2188
33 Ga0495605_0000479 3300046474 Bacteria 35085
34 Ga0495605_0008758 3300046474 Bacteria 5710
35 Ga0495584_0000339 3300046491 Bacteria 32432
36 Ga0495584_0004699 3300046491 Bacteria 7314
37 Ga0495584_0009919 3300046491 Bacteria 4894
38 Ga0495584_0024281 3300046491 Bacteria 3074
39 Ga0495584_0079988 3300046491 Bacteria 1644
40 Ga0495585_0002513 3300046492 Bacteria 13053
41 Ga0495585_0002514 3300046492 Bacteria 13044
42 Ga0495585_0015101 3300046492 Bacteria 4488
43 Ga0495585_0059862 3300046492 Bacteria 2097
44 Ga0495585_0070112 3300046492 Bacteria 1912
45 Ga0495594_0079632 3300046499 Bacteria 1829
46 Ga0495596_0000371 3300046500 Bacteria 28783
47 Ga0495596_0004190 3300046500 Bacteria 7082
48 Ga0495596_0004629 3300046500 Bacteria 6654
49 Ga0495596_0009125 3300046500 Bacteria 4378
50 Ga0495596_0010708 3300046500 Bacteria 3984
51 Ga0495596_0011802 3300046500 Bacteria 3751
52 Ga0495596_0019124 3300046500 Bacteria 2818
53 Ga0495596_0025789 3300046500 Bacteria 2373
54 Ga0495596_0027548 3300046500 Bacteria 2284
55 Ga0495596_0037958 3300046500 Bacteria 1904
56 Ga0495607_0003403 3300046501 Bacteria 12189
57 Ga0495607_0013690 3300046501 Bacteria 5304
58 Ga0495607_0015068 3300046501 Bacteria 5020
59 Ga0495583_0000205 3300046506 Bacteria 99711
60 Ga0495583_0002908 3300046506 Bacteria 13845
61 Ga0495583_0005476 3300046506 Bacteria 8616
62 Ga0495583_0030324 3300046506 Bacteria 2635
63 Ga0495583_0030827 3300046506 Bacteria 2606
64 Ga0495583_0031813 3300046506 Bacteria 2553
65 Ga0495583_0036546 3300046506 Bacteria 2335
66 Ga0495606_0000232 3300046507 Bacteria 98402
67 Ga0495606_0003671 3300046507 Bacteria 16072
68 Ga0495606_0003810 3300046507 Bacteria 15668
69 Ga0495606_0018398 3300046507 Bacteria 5238
70 Ga0495606_0030033 3300046507 Bacteria 3804
71 Ga0495606_0086210 3300046507 Bacteria 1941
72 Ga0495606_0109574 3300046507 Bacteria 1667
73 Ga0495610_0001541 3300046512 Bacteria 20301
74 Ga0495610_0037547 3300046512 Bacteria 2464
75 Ga0495616_0000720 3300046513 Bacteria 24464
76 Ga0495616_0010370 3300046513 Bacteria 5398
77 Ga0495616_0013230 3300046513 Bacteria 4662
78 Ga0495616_0024373 3300046513 Bacteria 3245
79 Ga0495628_0069447 3300046516 Bacteria 2748
80 Ga0495631_0002018 3300046518 Bacteria 11823
81 Ga0495631_0003464 3300046518 Bacteria 8631
82 Ga0495631_0012443 3300046518 Bacteria 4153
83 Ga0495631_0012738 3300046518 Bacteria 4099
84 Ga0495631_0014881 3300046518 Bacteria 3743
85 Ga0495631_0045418 3300046518 Bacteria 1934
86 Ga0495631_0055830 3300046518 Bacteria 1720
87 Ga0495632_0000362 3300046519 Bacteria 43114
88 Ga0495632_0002511 3300046519 Bacteria 13903
89 Ga0495632_0005866 3300046519 Bacteria 8022
90 Ga0495632_0014180 3300046519 Bacteria 4519
91 Ga0495632_0049841 3300046519 Bacteria 2068
92 Ga0495637_0000014 3300046520 Bacteria 228956
93 Ga0495637_0003318 3300046520 Bacteria 8559
94 Ga0495643_0000671 3300046522 Bacteria 40243
95 Ga0495643_0020768 3300046522 Bacteria 3779
96 Ga0495643_0025214 3300046522 Bacteria 3366
97 Ga0495643_0044078 3300046522 Bacteria 2425
98 Ga0495648_0001528 3300046524 Bacteria 22639
99 Ga0495648_0002941 3300046524 Bacteria 15284
100 Ga0495648_0002950 3300046524 Bacteria 15275
101 Ga0495648_0013461 3300046524 Bacteria 6046
102 Ga0495648_0018957 3300046524 Bacteria 4854
103 Ga0495648_0027873 3300046524 Bacteria 3773
104 Ga0495648_0051599 3300046524 Bacteria 2505
105 Ga0495648_0072272 3300046524 Bacteria 1997
106 Ga0495648_0078102 3300046524 Bacteria 1894
107 Ga0495663_0021094 3300046525 Bacteria 1874
108 Ga0495642_0000970 3300046528 Bacteria 13358
109 Ga0495642_0004847 3300046528 Bacteria 5201
110 Ga0495642_0038060 3300046528 Bacteria 1948
111 Ga0495609_0002888 3300046538 Bacteria 10250
112 Ga0495609_0036631 3300046538 Bacteria 2214
113 Ga0495597_0000712 3300046542 Bacteria 26699
114 Ga0495597_0000713 3300046542 Bacteria 26682
115 Ga0495597_0037998 3300046542 Bacteria 2159
116 Ga0495597_0039039 3300046542 Bacteria 2127
117 Ga0495622_0049426 3300046557 Bacteria 1952
118 Ga0495633_0002296 3300046558 Bacteria 13647
119 Ga0495633_0007926 3300046558 Bacteria 6055
120 Ga0495633_0019173 3300046558 Bacteria 3460
121 Ga0495633_0040186 3300046558 Bacteria 2229
122 Ga0495656_0009603 3300046615 Bacteria 3486
123 Ga0495668_0002541 3300046616 Bacteria 14875
124 Ga0495668_0013961 3300046616 Bacteria 4722
125 Ga0495668_0014316 3300046616 Bacteria 4654
126 Ga0495668_0042867 3300046616 Bacteria 2518
127 Ga0495668_0043876 3300046616 Bacteria 2485
128 Ga0495668_0073852 3300046616 Bacteria 1873
129 Ga0495611_0000170 3300046648 Bacteria 46958
130 Ga0495611_0042611 3300046648 Bacteria 2027
131 Ga0495625_0019123 3300046660 Bacteria 5327
132 Ga0495625_0049106 3300046660 Bacteria 3034
133 Ga0495661_0000857 3300046665 Bacteria 28333
134 Ga0495661_0001133 3300046665 Bacteria 23317
135 Ga0495661_0004235 3300046665 Bacteria 10427
136 Ga0495661_0021179 3300046665 Bacteria 4240
137 Ga0495661_0038408 3300046665 Bacteria 2982
138 Ga0495661_0092909 3300046665 Bacteria 1713
139 Ga0495588_0020034 3300046674 Bacteria 3281
140 Ga0495588_0050524 3300046674 Bacteria 2139
141 Ga0495588_0103740 3300046674 Bacteria 1495
142 Ga0495669_0000075 3300046684 Bacteria 65812
143 Ga0495669_0001082 3300046684 Bacteria 11293
144 Ga0495669_0004469 3300046684 Bacteria 5779
145 Ga0495669_0006528 3300046684 Bacteria 4876
146 Ga0495669_0008148 3300046684 Bacteria 4397
147 Ga0495669_0035259 3300046684 Bacteria 2208
148 Ga0495670_0001297 3300046691 Bacteria 12172
149 Ga0495670_0012832 3300046691 Bacteria 4119
150 Ga0495670_0077358 3300046691 Bacteria 1691
151 Ga0495671_0001500 3300046692 Bacteria 15622
152 Ga0495671_0003346 3300046692 Bacteria 9893
153 Ga0495671_0018937 3300046692 Bacteria 3646
154 Ga0495649_0000359 3300046694 Bacteria 39325
155 Ga0495649_0014242 3300046694 Bacteria 4566
156 Ga0495649_0036668 3300046694 Bacteria 2693
157 Ga0495589_0020910 3300046794 Bacteria 3344
158 Ga0495589_0023949 3300046794 Bacteria 3105
159 Ga0495589_0035553 3300046794 Bacteria 2498
160 Ga0495589_0059720 3300046794 Bacteria 1873
161 Ga0495660_0001496 3300046810 Bacteria 15805
162 Ga0495660_0005727 3300046810 Bacteria 7420
163 Ga0495660_0015929 3300046810 Bacteria 4338
164 Ga0495660_0024747 3300046810 Bacteria 3418
165 Ga0495660_0036823 3300046810 Bacteria 2728
166 Ga0495660_0136953 3300046810 Bacteria 1222
167 Ga0495636_0008068 3300047318 Bacteria 4151
168 Ga0495672_0000102 3300047320 Bacteria 137373
169 Ga0495672_0000530 3300047320 Bacteria 43361
170 Ga0495676_0000034 3300047321 Bacteria 124977
171 Ga0495683_0008319 3300047323 Bacteria 5557
172 Ga0495683_0040454 3300047323 Bacteria 2355
173 Ga0495683_0104529 3300047323 Bacteria 1358
174 Ga0495687_000060 3300047443 Bacteria 179124
175 Ga0495687_016416 3300047443 Bacteria 3723
176 Ga0495677_0000351 3300047445 Bacteria 19904
177 Ga0495677_0006409 3300047445 Bacteria 4446
178 Ga0495677_0006658 3300047445 Bacteria 4354
179 Ga0495679_005671 3300047446 Bacteria 5506
180 Ga0495673_0000028 3300047469 Bacteria 473418
181 Ga0495681_0001849 3300047470 Bacteria 15555
182 Ga0495681_0001909 3300047470 Bacteria 15280
183 Ga0495681_0004185 3300047470 Bacteria 9906
184 Ga0495681_0010767 3300047470 Bacteria 5509
185 Ga0495684_0017642 3300047471 Bacteria 5498
186 Ga0495686_0000054 3300047472 Bacteria 259400
187 Ga0495686_0000646 3300047472 Bacteria 48002
188 Ga0495686_0095291 3300047472 Bacteria 1802
189 Ga0495686_0135265 3300047472 Bacteria 1458
190 Ga0495626_0000567 3300048091 Bacteria 36729
191 Ga0495626_0003891 3300048091 Bacteria 9357
192 Ga0495626_0022452 3300048091 Bacteria 3116
193 Ga0495626_0028659 3300048091 Bacteria 2697
194 Ga0495626_0034957 3300048091 Bacteria 2401
195 Ga0495626_0038709 3300048091 Bacteria 2259
196 Ga0495626_0052447 3300048091 Bacteria 1880
197 Ga0496102_0000362 3300048905 Bacteria 54816
198 Ga0496102_0034469 3300048905 Bacteria 4553
199 Ga0496102_0224363 3300048905 Bacteria 1771
200 Ga0496102_0302155 3300048905 Bacteria 1508
201 Ga0496103_0004627 3300048906 Bacteria 8332
202 Ga0496103_0041237 3300048906 Bacteria 2838
203 Ga0496107_0141401 3300048910 Bacteria 1779
204 Ga0496108_0433582 3300048911 Bacteria 1148
205 Ga0496110_0030781 3300048913 Bacteria 4627
206 Ga0496110_0040414 3300048913 Bacteria 4065
207 Ga0496111_0184720 3300048914 Bacteria 1550
208 Ga0496124_0049899 3300048927 Bacteria 3567
209 Ga0496124_0066289 3300048927 Bacteria 3007
210 Ga0496124_0127125 3300048927 Bacteria 2029
211 Ga0495678_000006 3300049459 Bacteria 463690
212 Ga0495678_000174 3300049459 Bacteria 74631
213 Ga0495678_002628 3300049459 Bacteria 11978
214 Ga0495678_004762 3300049459 Bacteria 7735
215 Ga0495682_0000909 3300049460 Bacteria 18062
216 Ga0495682_0030304 3300049460 Bacteria 2001
217 Ga0501269_000224 3300049766 Bacteria 16560
218 Ga0500618_001193 3300053125 Bacteria 12477
219 Ga0500642_0018490 3300053130 Unclassified 2697
220 Ga0500616_0008961 3300053153 Bacteria 6134
221 Ga0500622_0001725 3300053156 Bacteria 16914
222 2857558404 2857553236 Bacteria 6166726
223 2857563591 2857558681 Bacteria 6617694
224 2904427228 2904424332 Bacteria 7633521
225 Ga0495585_0045271
226 Ga0065165_1002989
227 Ga0070668_100020640
228 Ga0070669_100035535
229 Ga0070672_100103861
230 Ga0070665_100000008
231 Ga0068861_100056343
232 Ga0079104_1026083
233 Ga0157371_10000001
234 Ga0182008_10021901
235 Ga0207681_10064979
236 Ga0207691_10162022
237 Ga0207668_10027157
238 Ga0268266_10000016
239 Ga0268265_10093678
240 Ga0316180_1119664
241 Ga0307510_10109085
242 Ga0450904_000388
243 Ga0450906_019091
244 Ga0495617_000043
245 Ga0495617_001783
246 Ga0495627_000008
247 Ga0495627_000286
248 Ga0495627_013595
249 Ga0495592_0045073
250 Ga0495590_0000049
251 Ga0495591_000362
252 Ga0495591_043542
253 Ga0495638_0080674
254 Ga0495651_0011677
255 Ga0495650_0000108
256 Ga0495650_0035631
257 Ga0495605_0000479
258 Ga0495605_0008758
259 Ga0495584_0000339
260 Ga0495584_0004699
261 Ga0495584_0009919
262 Ga0495584_0024281
263 Ga0495584_0079988
264 Ga0495585_0002513
265 Ga0495585_0002514
266 Ga0495585_0015101
267 Ga0495585_0059862
268 Ga0495585_0070112
269 Ga0495594_0079632
270 Ga0495596_0000371
271 Ga0495596_0004190
272 Ga0495596_0004629
273 Ga0495596_0009125
274 Ga0495596_0010708
275 Ga0495596_0011802
276 Ga0495596_0019124
277 Ga0495596_0025789
278 Ga0495596_0027548
279 Ga0495596_0037958
280 Ga0495607_0003403
281 Ga0495607_0013690
282 Ga0495607_0015068
283 Ga0495583_0000205
284 Ga0495583_0002908
285 Ga0495583_0005476
286 Ga0495583_0030324
287 Ga0495583_0030827
288 Ga0495583_0031813
289 Ga0495583_0036546
290 Ga0495606_0000232
291 Ga0495606_0003671
292 Ga0495606_0003810
293 Ga0495606_0018398
294 Ga0495606_0030033
295 Ga0495606_0086210
296 Ga0495606_0109574
297 Ga0495610_0001541
298 Ga0495610_0037547
299 Ga0495616_0000720
300 Ga0495616_0010370
301 Ga0495616_0013230
302 Ga0495616_0024373
303 Ga0495628_0069447
304 Ga0495631_0002018
305 Ga0495631_0003464
306 Ga0495631_0012443
307 Ga0495631_0012738
308 Ga0495631_0014881
309 Ga0495631_0045418
310 Ga0495631_0055830
311 Ga0495632_0000362
312 Ga0495632_0002511
313 Ga0495632_0005866
314 Ga0495632_0014180
315 Ga0495632_0049841
316 Ga0495637_0000014
317 Ga0495637_0003318
318 Ga0495643_0000671
319 Ga0495643_0020768
320 Ga0495643_0025214
321 Ga0495643_0044078
322 Ga0495648_0001528
323 Ga0495648_0002941
324 Ga0495648_0002950
325 Ga0495648_0013461
326 Ga0495648_0018957
327 Ga0495648_0027873
328 Ga0495648_0051599
329 Ga0495648_0072272
330 Ga0495648_0078102
331 Ga0495663_0021094
332 Ga0495642_0000970
333 Ga0495642_0004847
334 Ga0495642_0038060
335 Ga0495609_0002888
336 Ga0495609_0036631
337 Ga0495597_0000712
338 Ga0495597_0000713
339 Ga0495597_0037998
340 Ga0495597_0039039
341 Ga0495622_0049426
342 Ga0495633_0002296
343 Ga0495633_0007926
344 Ga0495633_0019173
345 Ga0495633_0040186
346 Ga0495656_0009603
347 Ga0495668_0002541
348 Ga0495668_0013961
349 Ga0495668_0014316
350 Ga0495668_0042867
351 Ga0495668_0043876
352 Ga0495668_0073852
353 Ga0495611_0000170
354 Ga0495611_0042611
355 Ga0495625_0019123
356 Ga0495625_0049106
357 Ga0495661_0000857
358 Ga0495661_0001133
359 Ga0495661_0004235
360 Ga0495661_0021179
361 Ga0495661_0038408
362 Ga0495661_0092909
363 Ga0495588_0020034
364 Ga0495588_0050524
365 Ga0495588_0103740
366 Ga0495669_0000075
367 Ga0495669_0001082
368 Ga0495669_0004469
369 Ga0495669_0006528
370 Ga0495669_0008148
371 Ga0495669_0035259
372 Ga0495670_0001297
373 Ga0495670_0012832
374 Ga0495670_0077358
375 Ga0495671_0001500
376 Ga0495671_0003346
377 Ga0495671_0018937
378 Ga0495649_0000359
379 Ga0495649_0014242
380 Ga0495649_0036668
381 Ga0495589_0020910
382 Ga0495589_0023949
383 Ga0495589_0035553
384 Ga0495589_0059720
385 Ga0495660_0001496
386 Ga0495660_0005727
387 Ga0495660_0015929
388 Ga0495660_0024747
389 Ga0495660_0036823
390 Ga0495660_0136953
391 Ga0495636_0008068
392 Ga0495672_0000102
393 Ga0495672_0000530
394 Ga0495676_0000034
395 Ga0495683_0008319
396 Ga0495683_0040454
397 Ga0495683_0104529
398 Ga0495687_000060
399 Ga0495687_016416
400 Ga0495677_0000351
401 Ga0495677_0006409
402 Ga0495677_0006658
403 Ga0495679_005671
404 Ga0495673_0000028
405 Ga0495681_0001849
406 Ga0495681_0001909
407 Ga0495681_0004185
408 Ga0495681_0010767
409 Ga0495684_0017642
410 Ga0495686_0000054
411 Ga0495686_0000646
412 Ga0495686_0095291
413 Ga0495686_0135265
414 Ga0495626_0000567
415 Ga0495626_0003891
416 Ga0495626_0022452
417 Ga0495626_0028659
418 Ga0495626_0034957
419 Ga0495626_0038709
420 Ga0495626_0052447
421 Ga0496102_0000362
422 Ga0496102_0034469
423 Ga0496102_0224363
424 Ga0496102_0302155
425 Ga0496103_0004627
426 Ga0496103_0041237
427 Ga0496107_0141401
428 Ga0496108_0433582
429 Ga0496110_0030781
430 Ga0496110_0040414
431 Ga0496111_0184720
432 Ga0496124_0049899
433 Ga0496124_0066289
434 Ga0496124_0127125
435 Ga0495678_000006
436 Ga0495678_000174
437 Ga0495678_002628
438 Ga0495678_004762
439 Ga0495682_0000909
440 Ga0495682_0030304
441 Ga0501269_000224
442 Ga0500618_001193
443 Ga0500642_0018490
444 Ga0500616_0008961
445 Ga0500622_0001725
446 2857558404
447 2857563591
448 2904427228

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00512

HisKA

His Kinase A (phospho-acceptor) domain

189

254

0.95

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

299

408

0.89

PF01590

GAF

GAF domain

31

167

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8h70-assembly1.cif.gz_A crystal structure of the catalytic atp-binding domain of the phor sensor histidine kinase from vibrio cholera 0.8901 246 390
8dx0-assembly2.cif.gz_B vansc ca domain 0.8675 246 391
3a0z-assembly1.cif.gz_A catalytic domain of histidine kinase thka (tm1359) (nucleotide free form 4: isopropanol, orthorombic) 0.8661 245 390
8dx0-assembly2.cif.gz_B vansc ca domain 0.8561 246 391
8dwz-assembly1.cif.gz_A ca domain of vansa histidine kinase, 7 kev data 0.8536 246 391
ID Description Score Start End Superfamily
af_Q2FX96_176_237_1.20.5.1930 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.9233 172 229 1.20.5.1930
af_I1LI26_490_569_1.10.287.130 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.899 163 238 1.10.287.130
af_Q95PI2_414_485_1.10.287.130 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.8824 173 238 1.10.287.130
af_Q2FVQ8_303_454_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8692 246 390 3.30.565.10
af_P08400_277_428_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8687 248 390 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A2E8H2L5-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8708 244 389 GO:0016301
AF-A0A2H0PNL1-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8673 241 390 GO:0000155
AF-A0A3N5JLH6-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8644 245 392 GO:0000156
GO:0007234
GO:0016301
GO:0030295
AF-A0A534D1U0-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8636 224 397 GO:0000155
AF-A0A2V9ULQ1-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8603 239 391 GO:0000155
GO:0005886

Map