F323482

General Info

Members Datasets Scaffolds Average Seq Length
212 142 203 1040

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2889415604|2889419332
Length 1138
Sequence IFALRRPVTVLMLMLALALGGLYSLYRMQKDIFPSLNQPVIYVVHSYGGMDPKQIEGLATNVYETLFQYISGLEHVESRSLQSMCVMKLYFQPGTNMSEATANTVAYSNKAVSIMPYGSQPPFIIRLDAGSLPVGYLVFASKTKTIAEIQDMAMYRVRPMFASIPGTMSPPPFGGNVRAIVINLDPDRLRSYGLSPQDVVEALDRGNYASPSGNVTIKDQMAVVPANTMVLDPKELNNVPLKLGQNVYIRDVGKVSDSSDIEVGYALVNGRTSVYLPVVKRADASTLSVVADVKASLPRFQAALPDDVTISYEFDESPIVHRAIESVGVEGALGAGLTGLMVLLFLRDLRSVIVVVLNIPLALLGSIIVLDLTGNTINVMTLGGLALAIGILVDEATVEVENIHTQMEHTPSIARAVRQGNLETAVPRLLALLCILSVFIPSFIMQGAVKALFLPLSLAVGASMITSYLLSSTLVPVLSVWLLTGHEHDHDAEKADRENHPGMFSRLMGVFESVLGWTVKHRVKVVAAYLAITATVVVLVGTQLGRELFPRVNAGQFQMRVRPPEGTRYDLTLRVAQKTLEAIGEEVGPENVATSMGYIGAIPPQFTVNLAYQWSRGPDDSMLRVGLRPGSKIDVFELQENLRKSLPEKVGSWFRDELIRLGVDKDDAEERADRLVFAFEPGDLISSTMSLGSPAPIEVVVNGRNLTDTAAFMDRVYEQLDKVPSLRDLQIQQTLHYPTVQVVVDRERAGLSGVTARDIGDSMIAATYSSRFTSRNYWRDDISGTSYQVQVSVPPTKMTEATDVSLIPITKSGRRPDAPVEPSNPESPLLLRDVARVMRSAMPGEIDRYNMRRYLSVTANVEGEDLGRAITQVRQAIKAAGEPPRGVEVDMRGQVKPMEQMFTSLQIGLAVAVLVILIMLTAYFQSFRLALTAVASVPAVLTGVVLALYLTNTTLNIESFMGAIMAVGVAVSNAILLVSFADRDRRELHLAPAEAAVMAAKGRLRPIIMTSCAMIAGMIPMSLALEEGSEQNAPLGRAVVGGMAMSTFAALLVIPAVFTLVMARASKVSPSLDPDDPESPHYDPAAATHHDGHHAAPGHSHDHHRNGDSRADAPPPLDGAPSNGQASPPEESPNVHHT

Samples

Sample ID Description Type Environment
1 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
4 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
5 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
6 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
7 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
8 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
9 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
10 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
11 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
16 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
17 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
18 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
19 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
22 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
23 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
24 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
25 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
26 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
27 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
28 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
31 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
32 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
33 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
36 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
39 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
40 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
41 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
42 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
43 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
44 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
45 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
46 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
47 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
48 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
49 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
65 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
66 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
67 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
70 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
71 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
73 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
80 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
106 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
107 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
108 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
109 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
110 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
111 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
112 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
113 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
114 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
115 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
116 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
117 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
118 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
119 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
120 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
121 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
122 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
123 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
124 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
125 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
126 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
127 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
128 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
135 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
136 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
137 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
138 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
139 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
140 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
141 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
142 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.28
Metatranscriptomes 0
Isolates 4.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.04
Nodule 0
Rhizoplane 0.94
Rhizosphere 69.81
Stem 0
Stem Tuber 0
Unclassified 13.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000457 3300001979 Bacteria 17511
2 JGI25154J39366_1000016 3300002738 Bacteria 255057
3 rootH2_10009210 3300003320 Bacteria 76383
4 rootH2_10088382 3300003320 Bacteria 11597
5 rootH2_10171561 3300003320 Unclassified 4788
6 rootL2_10014561 3300003322 Bacteria 12679
7 rootL2_10070141 3300003322 Bacteria 9135
8 rootL2_10151900 3300003322 Bacteria 3691
9 rootL2_10229907 3300003322 Bacteria 7133
10 rootH1_10010450 3300003316 Bacteria 2142
11 rootH1_10010450 3300003323 Bacteria 64322
12 rootH1_10040670 3300003323 Bacteria 13538
13 rootH1_10070244 3300003323 Bacteria 18155
14 rootH1_10099492 3300003323 Bacteria 8461
15 rootH1_10135383 3300003323 Bacteria 15014
16 rootH1_10167906 3300003323 Bacteria 9552
17 JGI25160J50197_1001365 3300003354 Bacteria 12297
18 Ga0055535_1002109 3300003761 Bacteria 7888
19 Ga0055536_1000001 3300003781 Bacteria 630663
20 Ga0055528_1000610 3300003790 Bacteria 26690
21 Ga0055530_10003642 3300003791 Bacteria 8638
22 Ga0065165_1000232 3300005262 Bacteria 97117
23 Ga0070666_10000308 3300005335 Bacteria 31713
24 Ga0070680_100001032 3300005336 Bacteria 19943
25 Ga0070682_100001680 3300005337 Bacteria 12301
26 Ga0070660_100005355 3300005339 Bacteria 8879
27 Ga0070691_10004442 3300005341 Bacteria 6373
28 Ga0070669_100010050 3300005353 Bacteria 6728
29 Ga0070671_100009447 3300005355 Bacteria 7828
30 Ga0070708_100004153 3300005445 Bacteria 11370
31 Ga0070681_10011539 3300005458 Bacteria 8746
32 Ga0070706_100004248 3300005467 Bacteria 13902
33 Ga0070707_100000343 3300005468 Bacteria 45816
34 Ga0070698_100004429 3300005471 Bacteria 15434
35 Ga0070699_100003854 3300005518 Bacteria 13259
36 Ga0070679_100000398 3300005530 Bacteria 37016
37 Ga0070679_100008814 3300005530 Bacteria 9516
38 Ga0070697_100009583 3300005536 Bacteria 7564
39 Ga0070665_100000008 3300005548 Bacteria 606341
40 Ga0068855_100008221 3300005563 Bacteria 12613
41 Ga0068855_100012668 3300005563 Bacteria 10177
42 Ga0068855_100017404 3300005563 Bacteria 8647
43 Ga0068857_100000507 3300005577 Bacteria 27953
44 Ga0068852_100000123 3300005616 Bacteria 52266
45 Ga0068852_100002787 3300005616 Bacteria 12105
46 Ga0068859_100006144 3300005617 Bacteria 12206
47 Ga0068859_100009027 3300005617 Bacteria 10070
48 Ga0068863_100015364 3300005841 Bacteria 7359
49 Ga0068860_100000039 3300005843 Bacteria 232543
50 Ga0068860_100001055 3300005843 Bacteria 30405
51 Ga0081539_10000732 3300005985 Bacteria 65756
52 Ga0081539_10002589 3300005985 Bacteria 24876
53 Ga0081539_10007458 3300005985 Bacteria 9967
54 Ga0070716_100011557 3300006173 Bacteria 4448
55 Ga0070712_100011320 3300006175 Bacteria 5652
56 Ga0068871_100001537 3300006358 Bacteria 15484
57 Ga0075434_100058762 3300006871 Unclassified 3822
58 Ga0075436_100014355 3300006914 Bacteria 5423
59 Ga0097620_100006143 3300006931 Bacteria 12206
60 Ga0097620_100009027 3300006931 Bacteria 10070
61 Ga0105240_10000833 3300009093 Bacteria 55556
62 Ga0105240_10001248 3300009093 Bacteria 44154
63 Ga0105240_10002592 3300009093 Bacteria 28936
64 Ga0105240_10005205 3300009093 Bacteria 19450
65 Ga0105240_10020005 3300009093 Bacteria 8937
66 Ga0105240_10021603 3300009093 Bacteria 8559
67 Ga0114129_10127669 3300009147 Bacteria 3495
68 Ga0105241_10003552 3300009174 Bacteria 11602
69 Ga0105241_10003906 3300009174 Bacteria 11042
70 Ga0105248_10002377 3300009177 Bacteria 20905
71 Ga0105248_10021268 3300009177 Bacteria 7189
72 Ga0105237_10001914 3300009545 Bacteria 26581
73 Ga0105237_10003161 3300009545 Bacteria 19803
74 Ga0105237_10005379 3300009545 Bacteria 14473
75 Ga0105238_10000106 3300009551 Bacteria 91792
76 Ga0105238_10010963 3300009551 Bacteria 9115
77 Ga0105239_10000013 3300010375 Bacteria 327371
78 Ga0105239_10000078 3300010375 Bacteria 135743
79 Ga0105239_10000099 3300010375 Bacteria 120205
80 Ga0105239_10001502 3300010375 Bacteria 31023
81 Ga0105239_10002450 3300010375 Bacteria 23661
82 Ga0157371_10000155 3300013102 Bacteria 100230
83 Ga0157370_10003547 3300013104 Bacteria 18259
84 Ga0157370_10005261 3300013104 Bacteria 14556
85 Ga0157369_10033386 3300013105 Bacteria 5656
86 Ga0157369_10038711 3300013105 Bacteria 5214
87 Ga0157374_10000003 3300013296 Bacteria 854471
88 Ga0157374_10001068 3300013296 Bacteria 23756
89 Ga0157378_10001756 3300013297 Bacteria 19450
90 Ga0163162_10000266 3300013306 Bacteria 47442
91 Ga0163162_10003190 3300013306 Bacteria 15681
92 Ga0163162_10003230 3300013306 Bacteria 15601
93 Ga0163162_10009467 3300013306 Bacteria 9470
94 Ga0157372_10000441 3300013307 Bacteria 45823
95 Ga0157372_10003009 3300013307 Bacteria 18174
96 Ga0157372_10034932 3300013307 Bacteria 5532
97 Ga0157376_10001454 3300014969 Bacteria 15605
98 Ga0157376_10002421 3300014969 Bacteria 12619
99 Ga0182005_1000160 3300015265 Bacteria 46911
100 Ga0163161_10004951 3300017792 Bacteria 9269
101 Ga0209436_100757 3300025208 Bacteria 13377
102 Ga0209258_100234 3300025242 Bacteria 103648
103 Ga0209646_1000003 3300025246 Bacteria 1160860
104 Ga0209026_1000334 3300025250 Bacteria 45711
105 Ga0209148_1000234 3300025254 Bacteria 90627
106 Ga0209233_1000495 3300025261 Bacteria 23831
107 Ga0209673_1000166 3300025273 Bacteria 135260
108 Ga0209130_1001099 3300025284 Bacteria 20092
109 Ga0209676_1000008 3300025292 Bacteria 991778
110 Ga0209564_1002289 3300025295 Bacteria 15606
111 Ga0209564_1002520 3300025295 Bacteria 14161
112 Ga0209564_1006140 3300025295 Bacteria 6587
113 Ga0209758_1001139 3300025297 Bacteria 34076
114 Ga0209758_1005538 3300025297 Bacteria 9636
115 Ga0209050_1000045 3300025298 Bacteria 388022
116 Ga0209050_1003589 3300025298 Bacteria 11275
117 Ga0207426_1000096 3300025302 Bacteria 271627
118 Ga0207426_1000583 3300025302 Bacteria 48573
119 Ga0207426_1000757 3300025302 Bacteria 36041
120 Ga0209257_1004524 3300025304 Bacteria 10679
121 Ga0207680_10000163 3300025903 Bacteria 32422
122 Ga0207684_10004279 3300025910 Bacteria 13527
123 Ga0207654_10000632 3300025911 Bacteria 19858
124 Ga0207654_10007414 3300025911 Bacteria 5524
125 Ga0207707_10002168 3300025912 Bacteria 17774
126 Ga0207695_10000184 3300025913 Bacteria 181201
127 Ga0207695_10000645 3300025913 Bacteria 69294
128 Ga0207695_10003194 3300025913 Bacteria 23345
129 Ga0207695_10008337 3300025913 Bacteria 12983
130 Ga0207695_10025921 3300025913 Bacteria 6552
131 Ga0207695_10031488 3300025913 Bacteria 5815
132 Ga0207695_10056823 3300025913 Unclassified 4070
133 Ga0207671_10012110 3300025914 Bacteria 6964
134 Ga0207671_10037167 3300025914 Bacteria 3611
135 Ga0207693_10012561 3300025915 Bacteria 6841
136 Ga0207660_10004093 3300025917 Bacteria 9499
137 Ga0207657_10011197 3300025919 Bacteria 8918
138 Ga0207646_10000630 3300025922 Bacteria 45810
139 Ga0207694_10018873 3300025924 Bacteria 5213
140 Ga0207665_10012107 3300025939 Bacteria 5662
141 Ga0207711_10002109 3300025941 Bacteria 17957
142 Ga0207667_10000337 3300025949 Bacteria 64244
143 Ga0207667_10003030 3300025949 Bacteria 20857
144 Ga0207668_10005233 3300025972 Bacteria 7633
145 Ga0207658_10016386 3300025986 Bacteria 5098
146 Ga0207703_10005167 3300026035 Bacteria 10549
147 Ga0207639_10007543 3300026041 Bacteria 7419
148 Ga0207641_10001111 3300026088 Bacteria 27043
149 Ga0207648_10018465 3300026089 Bacteria 6313
150 Ga0207674_10002587 3300026116 Bacteria 22784
151 Ga0207698_10000290 3300026142 Bacteria 30465
152 Ga0268266_10000016 3300028379 Bacteria 629101
153 Ga0268264_10000080 3300028381 Bacteria 249126
154 Ga0268264_10000532 3300028381 Bacteria 48255
155 Ga0268264_10006309 3300028381 Bacteria 10000
156 Ga0268264_10027231 3300028381 Bacteria 4668
157 Ga0307515_10000024 3300028794 Bacteria 393119
158 Ga0265327_10003986 3300031251 Bacteria 13464
159 Ga0307509_10047710 3300031507 Bacteria 4606
160 Ga0265314_10014706 3300031711 Bacteria 6245
161 Ga0307516_10000750 3300031730 Bacteria 44208
162 Ga0307516_10033898 3300031730 Bacteria 5135
163 Ga0307510_10001159 3300033180 Bacteria 28372
164 Ga0373937_0004421 3300036401 Bacteria 11953
165 Ga0395899_0000003 3300037312 Bacteria 1232684
166 Ga0436360_0402962 3300039438 Bacteria 6329
167 Ga0466969_0000030 3300044656 Bacteria 90368
168 Ga0466972_0000006 3300044658 Bacteria 282264
169 Ga0466972_0000114 3300044658 Bacteria 68658
170 Ga0466972_0000139 3300044658 Bacteria 59557
171 Ga0466972_0001532 3300044658 Bacteria 11268
172 Ga0466966_0000293 3300044684 Bacteria 32754
173 Ga0466968_0006776 3300044735 Bacteria 4333
174 Ga0466970_0002381 3300044765 Bacteria 9088
175 Ga0466957_0000009 3300044842 Bacteria 76227
176 Ga0466957_0000235 3300044842 Bacteria 26217
177 Ga0466959_0000021 3300045049 Bacteria 132387
178 Ga0466959_0001837 3300045049 Bacteria 13330
179 Ga0495638_0000008 3300046460 Bacteria 565643
180 Ga0495638_0000069 3300046460 Bacteria 167503
181 Ga0495606_0015062 3300046507 Bacteria 5986
182 Ga0495630_0001000 3300046517 Bacteria 19667
183 Ga0495611_0000010 3300046648 Bacteria 156661
184 Ga0495674_0004577 3300047319 Bacteria 13299
185 Ga0495687_000004 3300047443 Bacteria 779298
186 Ga0495684_0007307 3300047471 Bacteria 8560
187 Ga0496109_0000107 3300048912 Bacteria 86168
188 Ga0496115_0026594 3300048918 Bacteria 4518
189 Ga0501034_0012616 3300049571 Bacteria 8719
190 Ga0501034_0023435 3300049571 Bacteria 6290
191 Ga0501047_0020582 3300049581 Bacteria 6335
192 nmdc:mga08x19_10697_c1 3300050514 Bacteria 5513
193 nmdc:mga0a205_48727_c1 3300050515 Bacteria 4089
194 Ga0500578_0000009 3300053086 Bacteria 219807
195 Ga0500578_0000324 3300053086 Bacteria 58297
196 Ga0500644_0000017 3300053088 Bacteria 106518
197 Ga0500583_0003781 3300053092 Unclassified 4830
198 Ga0500562_000100 3300053108 Bacteria 33338
199 Ga0500658_0000850 3300053134 Bacteria 12535
200 Ga0500559_0015109 3300053136 Unclassified 3262
201 Ga0500616_0000003 3300053153 Bacteria 1220687
202 Ga0500622_0000090 3300053156 Bacteria 96270
203 Ga0500622_0013662 3300053156 Unclassified 4378

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053136 Ga0500559_0015109 Ga0500559_0015109_625_3246 871
2 3300003322 rootL2_10151900 rootL2_101519002 885
3 3300025913 Ga0207695_10008337 Ga0207695_1000833711 973
4 3300049571 Ga0501034_0012616 Ga0501034_0012616_1613_4921 977
5 3300053156 Ga0500622_0013662 Ga0500622_0013662_1378_4329 980
6 3300044735 Ga0466968_0006776 Ga0466968_0006776_77_3034 981
7 3300009545 Ga0105237_10001914 Ga0105237_1000191421 984
8 3300010375 Ga0105239_10000013 Ga0105239_1000001312 984
9 3300037312 Ga0395899_0000003 Ga0395899_0000003_974549_977686 984
10 3300039438 Ga0436360_0402962 Ga0436360_0402962_2187_5648 988
11 3300009177 Ga0105248_10002377 Ga0105248_100023774 992
12 3300002738 JGI25154J39366_1000016 JGI25154J39366_100001612 994
13 3300025246 Ga0209646_1000003 Ga0209646_100000312 994
14 3300025250 Ga0209026_1000334 Ga0209026_100033412 994
15 3300048918 Ga0496115_0026594 Ga0496115_0026594_544_3828 994
16 3300053156 Ga0500622_0000090 Ga0500622_0000090_11501_14647 995
17 3300005445 Ga0070708_100004153 Ga0070708_1000041535 996
18 3300025941 Ga0207711_10002109 Ga0207711_1000210912 999
19 3300036401 Ga0373937_0004421 Ga0373937_0004421_2414_5638 1001
20 3300047471 Ga0495684_0007307 Ga0495684_0007307_1314_4538 1001
21 3300005467 Ga0070706_100004248 Ga0070706_1000042487 1003
22 3300005471 Ga0070698_100004429 Ga0070698_1000044299 1003
23 3300005518 Ga0070699_100003854 Ga0070699_1000038545 1003
24 3300005536 Ga0070697_100009583 Ga0070697_1000095832 1003
25 3300005985 Ga0081539_10002589 Ga0081539_1000258915 1003
26 3300025910 Ga0207684_10004279 Ga0207684_100042796 1003
27 3300010375 Ga0105239_10000099 Ga0105239_10000099116 1004
28 3300050515 nmdc:mga0a205_48727_c1 nmdc:mga0a205_48727_c1_404_3553 1005
29 3300003323 rootH1_10099492 rootH1_100994925 1007
30 3300053134 Ga0500658_0000850 Ga0500658_0000850_5361_8495 1007
31 3300003320 rootH2_10088382 rootH2_100883823 1008
32 3300005985 Ga0081539_10007458 Ga0081539_100074584 1009
33 3300013307 Ga0157372_10000441 Ga0157372_1000044133 1009
34 3300053086 Ga0500578_0000324 Ga0500578_0000324_27933_31079 1009
35 3300006914 Ga0075436_100014355 Ga0075436_1000143552 1010
36 3300044658 Ga0466972_0000114 Ga0466972_0000114_50561_53842 1010
37 3300050514 nmdc:mga08x19_10697_c1 nmdc:mga08x19_10697_c1_1361_4510 1010
38 3300046460 Ga0495638_0000069 Ga0495638_0000069_149606_152812 1016
39 3300005468 Ga0070707_100000343 Ga0070707_10000034343 1018
40 3300025922 Ga0207646_10000630 Ga0207646_1000063044 1018
41 3300005339 Ga0070660_100005355 Ga0070660_1000053554 1022
42 3300005530 Ga0070679_100000398 Ga0070679_1000003985 1022
43 3300005616 Ga0068852_100002787 Ga0068852_1000027879 1022
44 3300006173 Ga0070716_100011557 Ga0070716_1000115572 1022
45 3300006175 Ga0070712_100011320 Ga0070712_1000113203 1022
46 3300006871 Ga0075434_100058762 Ga0075434_1000587621 1022
47 3300025915 Ga0207693_10012561 Ga0207693_100125614 1022
48 3300025919 Ga0207657_10011197 Ga0207657_100111974 1022
49 3300025939 Ga0207665_10012107 Ga0207665_100121072 1022
50 3300025972 Ga0207668_10005233 Ga0207668_100052335 1022
51 3300031730 Ga0307516_10033898 Ga0307516_100338982 1022
52 3300009177 Ga0105248_10021268 Ga0105248_100212684 1023
53 3300010375 Ga0105239_10000078 Ga0105239_1000007859 1023
54 3300046517 Ga0495630_0001000 Ga0495630_0001000_10175_13405 1024
55 3300047319 Ga0495674_0004577 Ga0495674_0004577_9292_12522 1024
56 3300053108 Ga0500562_000100 Ga0500562_000100_6993_10136 1025
57 3300005563 Ga0068855_100008221 Ga0068855_1000082213 1027
58 3300005577 Ga0068857_100000507 Ga0068857_1000005079 1027
59 3300005616 Ga0068852_100000123 Ga0068852_1000001233 1027
60 3300009093 Ga0105240_10020005 Ga0105240_100200055 1027
61 3300009551 Ga0105238_10010963 Ga0105238_100109633 1027
62 3300025913 Ga0207695_10025921 Ga0207695_100259212 1027
63 3300025924 Ga0207694_10018873 Ga0207694_100188733 1027
64 3300025949 Ga0207667_10000337 Ga0207667_1000033750 1027
65 3300026116 Ga0207674_10002587 Ga0207674_1000258710 1027
66 3300026142 Ga0207698_10000290 Ga0207698_1000029027 1027
67 3300009174 Ga0105241_10003552 Ga0105241_100035522 1028
68 3300049571 Ga0501034_0023435 Ga0501034_0023435_1479_4745 1028
69 3300053092 Ga0500583_0003781 Ga0500583_0003781_486_3620 1028
70 3300005336 Ga0070680_100001032 Ga0070680_10000103212 1031
71 3300005337 Ga0070682_100001680 Ga0070682_1000016807 1031
72 3300005341 Ga0070691_10004442 Ga0070691_100044423 1031
73 3300005458 Ga0070681_10011539 Ga0070681_100115393 1031
74 3300005530 Ga0070679_100008814 Ga0070679_1000088145 1031
75 3300009093 Ga0105240_10005205 Ga0105240_100052057 1031
76 3300009147 Ga0114129_10127669 Ga0114129_101276692 1031
77 3300013104 Ga0157370_10003547 Ga0157370_100035475 1031
78 3300025911 Ga0207654_10000632 Ga0207654_100006322 1031
79 3300025912 Ga0207707_10002168 Ga0207707_100021686 1031
80 3300025917 Ga0207660_10004093 Ga0207660_100040936 1031
81 3300013105 Ga0157369_10033386 Ga0157369_100333863 1032
82 3300013307 Ga0157372_10034932 Ga0157372_100349323 1032
83 3300053086 Ga0500578_0000009 Ga0500578_0000009_25703_28978 1032
84 3300003781 Ga0055536_1000001 Ga0055536_100000184 1033
85 3300025292 Ga0209676_1000008 Ga0209676_1000008773 1033
86 3300025298 Ga0209050_1000045 Ga0209050_100004512 1033
87 3300044658 Ga0466972_0000139 Ga0466972_0000139_4453_7599 1033
88 3300003761 Ga0055535_1002109 Ga0055535_10021094 1034
89 3300025242 Ga0209258_100234 Ga0209258_1002348 1034
90 3300025254 Ga0209148_1000234 Ga0209148_10002348 1034
91 3300046507 Ga0495606_0015062 Ga0495606_0015062_1652_4816 1034
92 3300053088 Ga0500644_0000017 Ga0500644_0000017_44662_47772 1034
93 3300013306 Ga0163162_10000266 Ga0163162_100002663 1035
94 3300028381 Ga0268264_10006309 Ga0268264_100063096 1035
95 3300031730 Ga0307516_10000750 Ga0307516_1000075025 1035
96 3300013102 Ga0157371_10000155 Ga0157371_1000015536 1036
97 3300013104 Ga0157370_10005261 Ga0157370_100052617 1036
98 3300013105 Ga0157369_10038711 Ga0157369_100387112 1036
99 3300013307 Ga0157372_10003009 Ga0157372_100030096 1036
100 3300025261 Ga0209233_1000495 Ga0209233_10004958 1036
101 3300045049 Ga0466959_0001837 Ga0466959_0001837_2201_5335 1036
102 3300031507 Ga0307509_10047710 Ga0307509_100477102 1037
103 3300003320 rootH2_10009210 rootH2_1000921011 1038
104 3300003322 rootL2_10070141 rootL2_100701415 1038
105 3300003322 rootL2_10229907 rootL2_102299074 1038
106 3300003323 rootH1_10010450 rootH1_1001045035 1038
107 3300003323 rootH1_10040670 rootH1_100406708 1038
108 3300003323 rootH1_10135383 rootH1_101353835 1038
109 3300003323 rootH1_10167906 rootH1_101679065 1038
110 3300026041 Ga0207639_10007543 Ga0207639_100075435 1038
111 iso_pu_bacteria 2684623219 2687240375 1038
112 iso_pu_bacteria 2818991442 2819572891 1038
113 iso_pu_bacteria 2889415604 2889419332 1038
114 iso_pu_bacteria 2929177148 2929181412 1038
115 iso_pu_bacteria 2945977869 2945983819 1038
116 iso_pu_bacteria 2946013367 2946016787 1038
117 iso_pu_bacteria 8006984368 8006993882 1038
118 3300026089 Ga0207648_10018465 Ga0207648_100184652 1039
119 3300031251 Ga0265327_10003986 Ga0265327_100039868 1039
120 3300031711 Ga0265314_10014706 Ga0265314_100147061 1039
121 3300044658 Ga0466972_0001532 Ga0466972_0001532_4523_7654 1039
122 3300046460 Ga0495638_0000008 Ga0495638_0000008_36295_39432 1039
123 3300053153 Ga0500616_0000003 Ga0500616_0000003_499991_503128 1039
124 3300005355 Ga0070671_100009447 Ga0070671_1000094473 1040
125 3300005563 Ga0068855_100012668 Ga0068855_1000126686 1040
126 3300005563 Ga0068855_100017404 Ga0068855_1000174044 1040
127 3300006358 Ga0068871_100001537 Ga0068871_1000015376 1040
128 3300009093 Ga0105240_10000833 Ga0105240_1000083331 1040
129 3300009093 Ga0105240_10002592 Ga0105240_1000259223 1040
130 3300009093 Ga0105240_10021603 Ga0105240_100216036 1040
131 3300013296 Ga0157374_10000003 Ga0157374_10000003268 1040
132 3300013297 Ga0157378_10001756 Ga0157378_100017568 1040
133 3300013306 Ga0163162_10003190 Ga0163162_100031906 1040
134 3300014969 Ga0157376_10001454 Ga0157376_100014547 1040
135 3300014969 Ga0157376_10002421 Ga0157376_100024215 1040
136 3300017792 Ga0163161_10004951 Ga0163161_100049516 1040
137 3300025208 Ga0209436_100757 Ga0209436_10075710 1040
138 3300025284 Ga0209130_1001099 Ga0209130_100109912 1040
139 3300025302 Ga0207426_1000096 Ga0207426_100009621 1040
140 3300025913 Ga0207695_10000184 Ga0207695_1000018459 1040
141 3300025913 Ga0207695_10000645 Ga0207695_1000064546 1040
142 3300025913 Ga0207695_10056823 Ga0207695_100568232 1040
143 3300025914 Ga0207671_10037167 Ga0207671_100371672 1040
144 3300025949 Ga0207667_10003030 Ga0207667_1000303019 1040
145 3300025986 Ga0207658_10016386 Ga0207658_100163862 1040
146 3300044842 Ga0466957_0000235 Ga0466957_0000235_1666_4812 1040
147 iso_pu_bacteria 2884791551 2884792685 1040
148 3300005335 Ga0070666_10000308 Ga0070666_100003083 1041
149 3300005353 Ga0070669_100010050 Ga0070669_1000100502 1041
150 3300005617 Ga0068859_100006144 Ga0068859_1000061448 1041
151 3300006931 Ga0097620_100006143 Ga0097620_1000061438 1041
152 3300009174 Ga0105241_10003906 Ga0105241_100039062 1041
153 3300009545 Ga0105237_10003161 Ga0105237_1000316116 1041
154 3300009545 Ga0105237_10005379 Ga0105237_100053795 1041
155 3300010375 Ga0105239_10002450 Ga0105239_100024503 1041
156 3300013306 Ga0163162_10003230 Ga0163162_100032304 1041
157 3300015265 Ga0182005_1000160 Ga0182005_10001604 1041
158 3300025302 Ga0207426_1000757 Ga0207426_100075711 1041
159 3300025903 Ga0207680_10000163 Ga0207680_1000016330 1041
160 3300025911 Ga0207654_10007414 Ga0207654_100074142 1041
161 3300025914 Ga0207671_10012110 Ga0207671_100121103 1041
162 3300026035 Ga0207703_10005167 Ga0207703_100051672 1041
163 3300026088 Ga0207641_10001111 Ga0207641_1000111124 1041
164 3300028381 Ga0268264_10027231 Ga0268264_100272312 1041
165 iso_pu_bacteria 2818991460 2819677983 1041
166 iso_pu_bacteria 2929921140 2929924953 1041
167 3300003320 rootH2_10171561 rootH2_101715612 1042
168 3300003322 rootL2_10014561 rootL2_100145618 1042
169 3300003323 rootH1_10070244 rootH1_100702449 1042
170 3300005985 Ga0081539_10000732 Ga0081539_1000073251 1042
171 3300009551 Ga0105238_10000106 Ga0105238_1000010625 1042
172 3300025913 Ga0207695_10003194 Ga0207695_100031945 1042
173 3300044656 Ga0466969_0000030 Ga0466969_0000030_44358_47498 1042
174 3300044684 Ga0466966_0000293 Ga0466966_0000293_11757_14897 1042
175 3300044842 Ga0466957_0000009 Ga0466957_0000009_60166_63306 1042
176 3300045049 Ga0466959_0000021 Ga0466959_0000021_32589_35729 1042
177 3300048912 Ga0496109_0000107 Ga0496109_0000107_75996_79178 1042
178 3300049581 Ga0501047_0020582 Ga0501047_0020582_2523_5663 1042
179 3300005617 Ga0068859_100009027 Ga0068859_1000090277 1043
180 3300005841 Ga0068863_100015364 Ga0068863_1000153644 1043
181 3300006931 Ga0097620_100009027 Ga0097620_1000090277 1043
182 3300028794 Ga0307515_10000024 Ga0307515_1000002422 1043
183 3300013296 Ga0157374_10001068 Ga0157374_1000106817 1044
184 3300025295 Ga0209564_1006140 Ga0209564_10061403 1044
185 3300025297 Ga0209758_1001139 Ga0209758_100113913 1044
186 3300033180 Ga0307510_10001159 Ga0307510_100011593 1044
187 3300044658 Ga0466972_0000006 Ga0466972_0000006_210505_213639 1044
188 3300044765 Ga0466970_0002381 Ga0466970_0002381_3776_6910 1044
189 3300001979 JGI24740J21852_10000457 JGI24740J21852_1000045712 1045
190 3300003354 JGI25160J50197_1001365 JGI25160J50197_10013656 1045
191 3300003790 Ga0055528_1000610 Ga0055528_100061022 1045
192 3300003791 Ga0055530_10003642 Ga0055530_100036423 1045
193 3300005262 Ga0065165_1000232 Ga0065165_100023227 1045
194 3300005548 Ga0070665_100000008 Ga0070665_10000000845 1045
195 3300005843 Ga0068860_100000039 Ga0068860_10000003980 1045
196 3300005843 Ga0068860_100001055 Ga0068860_1000010555 1045
197 3300009093 Ga0105240_10001248 Ga0105240_1000124830 1045
198 3300010375 Ga0105239_10001502 Ga0105239_1000150218 1045
199 3300013306 Ga0163162_10009467 Ga0163162_100094678 1045
200 3300025273 Ga0209673_1000166 Ga0209673_100016646 1045
201 3300025295 Ga0209564_1002289 Ga0209564_10022898 1045
202 3300025295 Ga0209564_1002520 Ga0209564_10025205 1045
203 3300025297 Ga0209758_1005538 Ga0209758_10055382 1045
204 3300025298 Ga0209050_1003589 Ga0209050_10035894 1045
205 3300025302 Ga0207426_1000583 Ga0207426_100058318 1045
206 3300025304 Ga0209257_1004524 Ga0209257_10045243 1045
207 3300025913 Ga0207695_10031488 Ga0207695_100314882 1045
208 3300028379 Ga0268266_10000016 Ga0268266_1000001644 1045
209 3300028381 Ga0268264_10000080 Ga0268264_10000080129 1045
210 3300028381 Ga0268264_10000532 Ga0268264_1000053213 1045
211 3300046648 Ga0495611_0000010 Ga0495611_0000010_76963_80133 1045
212 3300047443 Ga0495687_000004 Ga0495687_000004_127475_130633 1045

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

1

611

0.97

PF00873

ACR_tran

AcrB/AcrD/AcrF family

664

1062

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4k0e-assembly1.cif.gz_A x-ray crystal structure of a heavy metal efflux pump, crystal form ii 0.9219 3 1023
4k0e-assembly1.cif.gz_A x-ray crystal structure of a heavy metal efflux pump, crystal form ii 0.9201 3 1023
4k0j-assembly2.cif.gz_F x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.9146 3 1019
4k0j-assembly2.cif.gz_E x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.9119 4 1019
4k0j-assembly2.cif.gz_F x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.911 3 1019
ID Description Score Start End Superfamily
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9635 872 1019 1.20.1640.10
af_P37637_331_506_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9358 325 496 1.20.1640.10
5lq3E05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9321 879 1019 1.20.1640.10
af_P76399_3_1009_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9292 4 1019 1.20.1640.10
af_P24177_305_504_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9265 295 491 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A355AMG5-F1-model_v4 AcrB/AcrD/AcrF family protein 0.9625 358 481 GO:0005886
GO:0042910
AF-E1YGF0-F1-model_v4 Uncharacterized protein 0.95 881 1027 GO:0005886
GO:0042910
AF-A0A7C2PBR1-F1-model_v4 Acriflavine resistance protein B 0.9468 880 1019 GO:0005886
GO:0042910
AF-A0A2R7S2T7-F1-model_v4 deleted 0.9456 869 1026
AF-A0A355AMG5-F1-model_v4 AcrB/AcrD/AcrF family protein 0.9405 358 481 GO:0005886
GO:0042910

Feature Viewer

pLDDT pTM Quality
83.53 0.78 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map