F319145

General Info

Members Datasets Scaffolds Average Seq Length
209 145 418 178

Family's Representative Sequence

Representative Sequence 3300025303|Ga0209051_1001621|Ga0209051_100162114
Length 206
Sequence MREPSRVDTVPLQGTVLASCGYPFDEVDMDSINRKQPETNRADLSGSDAIDLLREAVKKNGTCFFCTGVSTGGSHATRPMSTLQVDEAGTLWFMSASDSHKNAELGQNPLVWMFFQGSEHSGFVTLHGRATVKRDKAKIGELWSPLMKTWFTEGEDDPRITTIAVTPLAGYYWDNKHGDTVAGIKMAVGAAIGRTLDDSIEGELRF

Samples

Sample ID Description Type Environment
1 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027552 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
79 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
85 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
86 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
87 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
88 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
89 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
90 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
91 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
92 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
93 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
94 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
95 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
96 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
97 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
98 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
99 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
100 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
101 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
102 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
103 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
104 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
105 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
106 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
107 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
108 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
111 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
112 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
113 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
114 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
115 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
116 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
117 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
118 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
119 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
120 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
121 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
124 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
125 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
126 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
127 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
128 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
129 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
130 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
131 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
134 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
135 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
137 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
138 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
139 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
140 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
141 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
142 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
143 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
144 2831864461 Roseateles noduli HZ7 Isolate Nodule
145 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.09
Metatranscriptomes 0
Isolates 1.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.7
Nodule 0.96
Rhizoplane 5.26
Rhizosphere 84.21
Stem 0
Stem Tuber 0
Unclassified 9.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209051_1001621 3300025303 Bacteria 18339
2 rootH1_10055850 3300003316 Bacteria 10138
3 rootH2_10006617 3300003320 Bacteria 52484
4 rootH2_10041278 3300003320 Bacteria 10366
5 Ga0055526_1016741 3300003771 Bacteria 2848
6 Ga0065165_1003062 3300005262 Bacteria 12515
7 Ga0070658_10326553 3300005327 Bacteria 1311
8 Ga0070676_10072602 3300005328 Bacteria 2069
9 Ga0070670_100522786 3300005331 Bacteria 1057
10 Ga0070677_10086733 3300005333 Bacteria 1353
11 Ga0070666_10011216 3300005335 Bacteria 5619
12 Ga0070680_100123492 3300005336 Bacteria 2162
13 Ga0070682_101232307 3300005337 Unclassified 633
14 Ga0070660_100602358 3300005339 Bacteria 919
15 Ga0070689_100585293 3300005340 Bacteria 965
16 Ga0070668_100037318 3300005347 Bacteria 3710
17 Ga0070669_100319163 3300005353 Bacteria 1254
18 Ga0070669_100628854 3300005353 Bacteria 901
19 Ga0070675_100084685 3300005354 Bacteria 2648
20 Ga0070671_100265477 3300005355 Bacteria 1459
21 Ga0070673_100072418 3300005364 Unclassified 2771
22 Ga0070659_100634866 3300005366 Bacteria 920
23 Ga0070678_100260823 3300005456 Bacteria 1457
24 Ga0070678_100580169 3300005456 Bacteria 999
25 Ga0070678_101062353 3300005456 Unclassified 746
26 Ga0070678_101123845 3300005456 Bacteria 726
27 Ga0070662_100006175 3300005457 Bacteria 7707
28 Ga0070681_10694346 3300005458 Bacteria 933
29 Ga0068853_100125648 3300005539 Bacteria 2291
30 Ga0070672_100007136 3300005543 Bacteria 7559
31 Ga0070672_100642624 3300005543 Bacteria 926
32 Ga0068861_100111061 3300005719 Bacteria 2196
33 Ga0068860_100094256 3300005843 Bacteria 2853
34 Ga0097621_101407647 3300006237 Bacteria 660
35 Ga0075370_10122914 3300006353 Bacteria 1512
36 Ga0075370_10213094 3300006353 Bacteria 1141
37 Ga0068871_100155248 3300006358 Unclassified 1954
38 Ga0068865_100007950 3300006881 Bacteria 6549
39 Ga0105240_10018823 3300009093 Bacteria 9250
40 Ga0105240_10256495 3300009093 Bacteria 2019
41 Ga0105240_10404113 3300009093 Bacteria 1538
42 Ga0105240_11272286 3300009093 Unclassified 777
43 Ga0111539_10225299 3300009094 Bacteria 2184
44 Ga0111539_11116967 3300009094 Bacteria 916
45 Ga0105241_10135228 3300009174 Bacteria 2001
46 Ga0105248_10290025 3300009177 Unclassified 1842
47 Ga0105237_10000485 3300009545 Bacteria 56664
48 Ga0105237_10021936 3300009545 Bacteria 6558
49 Ga0105237_10076962 3300009545 Bacteria 3326
50 Ga0105249_10571065 3300009553 Bacteria 1183
51 Ga0105239_10001068 3300010375 Bacteria 38074
52 Ga0157373_10222849 3300013100 Bacteria 1331
53 Ga0157371_10049449 3300013102 Unclassified 2987
54 Ga0157371_10056104 3300013102 Unclassified 2794
55 Ga0157371_10691194 3300013102 Unclassified 763
56 Ga0157370_10024024 3300013104 Bacteria 6043
57 Ga0157370_10087862 3300013104 Unclassified 2920
58 Ga0157370_10550264 3300013104 Bacteria 1058
59 Ga0157369_10019657 3300013105 Bacteria 7559
60 Ga0157369_10181731 3300013105 Bacteria 2213
61 Ga0157369_10277820 3300013105 Bacteria 1744
62 Ga0163162_10259737 3300013306 Bacteria 1869
63 Ga0163162_10380667 3300013306 Bacteria 1544
64 Ga0163162_10712347 3300013306 Unclassified 1125
65 Ga0157372_10153503 3300013307 Unclassified 2659
66 Ga0157372_10876733 3300013307 Bacteria 1042
67 Ga0157372_10988877 3300013307 Unclassified 975
68 Ga0157372_11223042 3300013307 Bacteria 868
69 Ga0157375_10018589 3300013308 Bacteria 6305
70 Ga0157380_10698987 3300014326 Bacteria 1019
71 Ga0157380_11176303 3300014326 Bacteria 809
72 Ga0209455_1011475 3300025272 Bacteria 2178
73 Ga0209673_1025770 3300025273 Bacteria 1948
74 Ga0209564_1000005 3300025295 Bacteria 1147192
75 Ga0209256_1039930 3300025299 Bacteria 1203
76 Ga0209051_1031309 3300025303 Bacteria 2050
77 Ga0207697_10082868 3300025315 Bacteria 1353
78 Ga0207697_10089518 3300025315 Bacteria 1304
79 Ga0207682_10019433 3300025893 Bacteria 2659
80 Ga0207682_10072734 3300025893 Bacteria 1459
81 Ga0207680_10002457 3300025903 Bacteria 8647
82 Ga0207705_10220822 3300025909 Bacteria 1439
83 Ga0207705_10331892 3300025909 Bacteria 1170
84 Ga0207705_10716460 3300025909 Unclassified 778
85 Ga0207705_11162687 3300025909 Unclassified 593
86 Ga0207654_10329795 3300025911 Unclassified 1046
87 Ga0207695_10000013 3300025913 Bacteria 821265
88 Ga0207671_10013403 3300025914 Bacteria 6528
89 Ga0207671_10048380 3300025914 Bacteria 3147
90 Ga0207657_10202537 3300025919 Unclassified 1596
91 Ga0207657_10620677 3300025919 Bacteria 843
92 Ga0207652_10497898 3300025921 Bacteria 1097
93 Ga0207681_10258554 3300025923 Bacteria 1362
94 Ga0207681_10485899 3300025923 Bacteria 1009
95 Ga0207659_10067073 3300025926 Bacteria 2606
96 Ga0207659_10187044 3300025926 Bacteria 1645
97 Ga0207659_10353821 3300025926 Bacteria 1219
98 Ga0207644_10447563 3300025931 Bacteria 1061
99 Ga0207690_10813738 3300025932 Bacteria 772
100 Ga0207706_10139305 3300025933 Unclassified 2134
101 Ga0207669_10200162 3300025937 Bacteria 1449
102 Ga0207669_10605254 3300025937 Bacteria 891
103 Ga0207704_10001024 3300025938 Bacteria 12410
104 Ga0207691_10014909 3300025940 Bacteria 7406
105 Ga0207691_10103529 3300025940 Bacteria 2538
106 Ga0207711_10053590 3300025941 Bacteria 3459
107 Ga0207668_10308112 3300025972 Bacteria 1309
108 Ga0207639_10235031 3300026041 Bacteria 1591
109 Ga0207678_10153159 3300026067 Bacteria 1969
110 Ga0207648_10237462 3300026089 Bacteria 1622
111 Ga0207648_10457172 3300026089 Bacteria 1163
112 Ga0207674_10051926 3300026116 Bacteria 4182
113 Ga0207675_100076758 3300026118 Plasmid 3129
114 Ga0207683_10104287 3300026121 Bacteria 2534
115 Ga0207683_10910255 3300026121 Bacteria 817
116 Ga0209982_1012863 3300027552 Unclassified 1258
117 Ga0268264_10094294 3300028381 Bacteria 2587
118 Ga0307408_100009185 3300031548 Bacteria 6519
119 Ga0307405_10931794 3300031731 Bacteria 737
120 Ga0307406_10005096 3300031901 Bacteria 7171
121 Ga0307407_10232456 3300031903 Bacteria 1253
122 Ga0307409_100232085 3300031995 Bacteria 1673
123 Ga0307416_100609688 3300032002 Bacteria 1172
124 Ga0373937_0903150 3300036401 Bacteria 832
125 Ga0373925_0417373 3300037068 Bacteria 1096
126 Ga0451791_0126698 3300041451 Bacteria 761
127 Ga0466969_0065378 3300044656 Bacteria 1758
128 Ga0466959_0034772 3300045049 Bacteria 3727
129 Ga0495580_0459172 3300046472 Bacteria 854
130 Ga0495605_0070578 3300046474 Bacteria 1651
131 Ga0495605_0112540 3300046474 Bacteria 1240
132 Ga0495584_0000323 3300046491 Bacteria 33436
133 Ga0495585_0145762 3300046492 Bacteria 1237
134 Ga0495607_0012209 3300046501 Bacteria 5678
135 Ga0495607_0038756 3300046501 Bacteria 2852
136 Ga0495607_0045450 3300046501 Bacteria 2583
137 Ga0495607_0050538 3300046501 Bacteria 2420
138 Ga0495607_0067792 3300046501 Bacteria 2003
139 Ga0495583_0008655 3300046506 Bacteria 6192
140 Ga0495606_0000020 3300046507 Bacteria 274490
141 Ga0495606_0005342 3300046507 Bacteria 12344
142 Ga0495606_0043266 3300046507 Bacteria 3005
143 Ga0495606_0060492 3300046507 Bacteria 2426
144 Ga0495610_0001673 3300046512 Bacteria 19508
145 Ga0495616_0013413 3300046513 Bacteria 4621
146 Ga0495616_0058058 3300046513 Bacteria 1906
147 Ga0495631_0000295 3300046518 Bacteria 34905
148 Ga0495631_0168494 3300046518 Bacteria 939
149 Ga0495637_0029495 3300046520 Bacteria 2442
150 Ga0495643_0025957 3300046522 Bacteria 3311
151 Ga0495644_0062536 3300046523 Bacteria 1399
152 Ga0495648_0018911 3300046524 Bacteria 4860
153 Ga0495648_0186304 3300046524 Bacteria 1050
154 Ga0495654_0003975 3300046530 Bacteria 8904
155 Ga0495609_0022558 3300046538 Bacteria 2899
156 Ga0495597_0055486 3300046542 Bacteria 1737
157 Ga0495633_0007954 3300046558 Bacteria 6041
158 Ga0495633_0048418 3300046558 Bacteria 2007
159 Ga0495668_0002104 3300046616 Bacteria 17216
160 Ga0495668_0275904 3300046616 Bacteria 921
161 Ga0495611_0038602 3300046648 Bacteria 2124
162 Ga0495611_0101850 3300046648 Bacteria 1334
163 Ga0495625_0004594 3300046660 Bacteria 12980
164 Ga0495625_0032202 3300046660 Bacteria 3892
165 Ga0495659_0047381 3300046664 Bacteria 1554
166 Ga0495661_0148463 3300046665 Bacteria 1268
167 Ga0495588_0004945 3300046674 Bacteria 5913
168 Ga0495670_0000707 3300046691 Bacteria 15898
169 Ga0495671_0035616 3300046692 Bacteria 2526
170 Ga0495671_0092699 3300046692 Bacteria 1478
171 Ga0495660_0043527 3300046810 Bacteria 2475
172 Ga0495672_0009026 3300047320 Bacteria 7270
173 Ga0495687_001120 3300047443 Bacteria 26041
174 Ga0495687_110007 3300047443 Bacteria 1015
175 Ga0495677_0064867 3300047445 Bacteria 1357
176 Ga0495677_0122174 3300047445 Bacteria 994
177 Ga0495679_016042 3300047446 Bacteria 2720
178 Ga0495685_013967 3300047447 Bacteria 2725
179 Ga0495681_0070069 3300047470 Bacteria 1591
180 Ga0495686_0006391 3300047472 Bacteria 9035
181 Ga0495686_0009687 3300047472 Bacteria 6917
182 Ga0495626_0038591 3300048091 Bacteria 2263
183 Ga0495626_0214766 3300048091 Bacteria 783
184 Ga0496102_0000173 3300048905 Bacteria 87737
185 Ga0496103_0864527 3300048906 Bacteria 568
186 Ga0496104_0015887 3300048907 Bacteria 6830
187 Ga0496104_0862263 3300048907 Bacteria 811
188 Ga0496105_0366128 3300048908 Bacteria 1149
189 Ga0496106_0173846 3300048909 Bacteria 1708
190 Ga0496107_0080694 3300048910 Bacteria 2373
191 Ga0496110_0001557 3300048913 Bacteria 16711
192 Ga0496110_0109640 3300048913 Bacteria 2479
193 Ga0496111_0038442 3300048914 Bacteria 3429
194 Ga0496124_0017546 3300048927 Bacteria 6741
195 Ga0496124_0038760 3300048927 Bacteria 4135
196 Ga0495678_000035 3300049459 Bacteria 200957
197 Ga0495682_0106658 3300049460 Bacteria 1004
198 Ga0501034_0000002 3300049571 Bacteria 565510
199 Ga0501240_008483 3300049673 Bacteria 1320
200 Ga0501080_0003226 3300049742 Bacteria 14392
201 nmdc:mga08y16_270157_c1 3300050511 Bacteria 1755
202 Ga0500578_0000011 3300053086 Bacteria 217243
203 Ga0500562_008542 3300053108 Bacteria 2588
204 Ga0500618_045925 3300053125 Bacteria 996
205 Ga0500622_0039779 3300053156 Bacteria 2451
206 2588291673 2588253510 Bacteria 6901809
207 2831868815 2831864461 Bacteria 6502356
208 2831869786 2831864461 Bacteria 6502356
209 2977232874 2977232053 Bacteria 5485925
210 Ga0209051_1001621
211 rootH1_10055850
212 rootH2_10006617
213 rootH2_10041278
214 Ga0055526_1016741
215 Ga0065165_1003062
216 Ga0070658_10326553
217 Ga0070676_10072602
218 Ga0070670_100522786
219 Ga0070677_10086733
220 Ga0070666_10011216
221 Ga0070680_100123492
222 Ga0070682_101232307
223 Ga0070660_100602358
224 Ga0070689_100585293
225 Ga0070668_100037318
226 Ga0070669_100319163
227 Ga0070669_100628854
228 Ga0070675_100084685
229 Ga0070671_100265477
230 Ga0070673_100072418
231 Ga0070659_100634866
232 Ga0070678_100260823
233 Ga0070678_100580169
234 Ga0070678_101062353
235 Ga0070678_101123845
236 Ga0070662_100006175
237 Ga0070681_10694346
238 Ga0068853_100125648
239 Ga0070672_100007136
240 Ga0070672_100642624
241 Ga0068861_100111061
242 Ga0068860_100094256
243 Ga0097621_101407647
244 Ga0075370_10122914
245 Ga0075370_10213094
246 Ga0068871_100155248
247 Ga0068865_100007950
248 Ga0105240_10018823
249 Ga0105240_10256495
250 Ga0105240_10404113
251 Ga0105240_11272286
252 Ga0111539_10225299
253 Ga0111539_11116967
254 Ga0105241_10135228
255 Ga0105248_10290025
256 Ga0105237_10000485
257 Ga0105237_10021936
258 Ga0105237_10076962
259 Ga0105249_10571065
260 Ga0105239_10001068
261 Ga0157373_10222849
262 Ga0157371_10049449
263 Ga0157371_10056104
264 Ga0157371_10691194
265 Ga0157370_10024024
266 Ga0157370_10087862
267 Ga0157370_10550264
268 Ga0157369_10019657
269 Ga0157369_10181731
270 Ga0157369_10277820
271 Ga0163162_10259737
272 Ga0163162_10380667
273 Ga0163162_10712347
274 Ga0157372_10153503
275 Ga0157372_10876733
276 Ga0157372_10988877
277 Ga0157372_11223042
278 Ga0157375_10018589
279 Ga0157380_10698987
280 Ga0157380_11176303
281 Ga0209455_1011475
282 Ga0209673_1025770
283 Ga0209564_1000005
284 Ga0209256_1039930
285 Ga0209051_1031309
286 Ga0207697_10082868
287 Ga0207697_10089518
288 Ga0207682_10019433
289 Ga0207682_10072734
290 Ga0207680_10002457
291 Ga0207705_10220822
292 Ga0207705_10331892
293 Ga0207705_10716460
294 Ga0207705_11162687
295 Ga0207654_10329795
296 Ga0207695_10000013
297 Ga0207671_10013403
298 Ga0207671_10048380
299 Ga0207657_10202537
300 Ga0207657_10620677
301 Ga0207652_10497898
302 Ga0207681_10258554
303 Ga0207681_10485899
304 Ga0207659_10067073
305 Ga0207659_10187044
306 Ga0207659_10353821
307 Ga0207644_10447563
308 Ga0207690_10813738
309 Ga0207706_10139305
310 Ga0207669_10200162
311 Ga0207669_10605254
312 Ga0207704_10001024
313 Ga0207691_10014909
314 Ga0207691_10103529
315 Ga0207711_10053590
316 Ga0207668_10308112
317 Ga0207639_10235031
318 Ga0207678_10153159
319 Ga0207648_10237462
320 Ga0207648_10457172
321 Ga0207674_10051926
322 Ga0207675_100076758
323 Ga0207683_10104287
324 Ga0207683_10910255
325 Ga0209982_1012863
326 Ga0268264_10094294
327 Ga0307408_100009185
328 Ga0307405_10931794
329 Ga0307406_10005096
330 Ga0307407_10232456
331 Ga0307409_100232085
332 Ga0307416_100609688
333 Ga0373937_0903150
334 Ga0373925_0417373
335 Ga0451791_0126698
336 Ga0466969_0065378
337 Ga0466959_0034772
338 Ga0495580_0459172
339 Ga0495605_0070578
340 Ga0495605_0112540
341 Ga0495584_0000323
342 Ga0495585_0145762
343 Ga0495607_0012209
344 Ga0495607_0038756
345 Ga0495607_0045450
346 Ga0495607_0050538
347 Ga0495607_0067792
348 Ga0495583_0008655
349 Ga0495606_0000020
350 Ga0495606_0005342
351 Ga0495606_0043266
352 Ga0495606_0060492
353 Ga0495610_0001673
354 Ga0495616_0013413
355 Ga0495616_0058058
356 Ga0495631_0000295
357 Ga0495631_0168494
358 Ga0495637_0029495
359 Ga0495643_0025957
360 Ga0495644_0062536
361 Ga0495648_0018911
362 Ga0495648_0186304
363 Ga0495654_0003975
364 Ga0495609_0022558
365 Ga0495597_0055486
366 Ga0495633_0007954
367 Ga0495633_0048418
368 Ga0495668_0002104
369 Ga0495668_0275904
370 Ga0495611_0038602
371 Ga0495611_0101850
372 Ga0495625_0004594
373 Ga0495625_0032202
374 Ga0495659_0047381
375 Ga0495661_0148463
376 Ga0495588_0004945
377 Ga0495670_0000707
378 Ga0495671_0035616
379 Ga0495671_0092699
380 Ga0495660_0043527
381 Ga0495672_0009026
382 Ga0495687_001120
383 Ga0495687_110007
384 Ga0495677_0064867
385 Ga0495677_0122174
386 Ga0495679_016042
387 Ga0495685_013967
388 Ga0495681_0070069
389 Ga0495686_0006391
390 Ga0495686_0009687
391 Ga0495626_0038591
392 Ga0495626_0214766
393 Ga0496102_0000173
394 Ga0496103_0864527
395 Ga0496104_0015887
396 Ga0496104_0862263
397 Ga0496105_0366128
398 Ga0496106_0173846
399 Ga0496107_0080694
400 Ga0496110_0001557
401 Ga0496110_0109640
402 Ga0496111_0038442
403 Ga0496124_0017546
404 Ga0496124_0038760
405 Ga0495678_000035
406 Ga0495682_0106658
407 Ga0501034_0000002
408 Ga0501240_008483
409 Ga0501080_0003226
410 nmdc:mga08y16_270157_c1
411 Ga0500578_0000011
412 Ga0500562_008542
413 Ga0500618_045925
414 Ga0500622_0039779
415 2588291673
416 2831868815
417 2831869786
418 2977232874

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01243

Putative_PNPOx

Pyridoxamine 5'-phosphate oxidase

50

137

0.95

PF16242

Pyrid_ox_like

Pyridoxamine 5'-phosphate oxidase like

48

197

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2i02-assembly1.cif.gz_B crystal structure of a pyridoxamine 5'-phosphate oxidase-like family protein (npun_r6570) from nostoc punctiforme pcc 73102 at 1.80 a resolution 0.9193 19 146
2re7-assembly1.cif.gz_A-2 crystal structure of a pyridoxamine 5'-phosphate oxidase related protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a resolution 0.916 23 142
2fhq-assembly1.cif.gz_B crystal structure of general stress protein from bacteroides thetaiotaomicron 0.8964 21 144
3ec6-assembly1.cif.gz_A-2 crystal structure of the general stress protein 26 from bacillus anthracis str. sterne 0.8858 22 144
2i02-assembly1.cif.gz_A crystal structure of a pyridoxamine 5'-phosphate oxidase-like family protein (npun_r6570) from nostoc punctiforme pcc 73102 at 1.80 a resolution 0.851 23 146
ID Description Score Start End Superfamily
2re7A00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.9138 23 142 2.30.110.10
2fhqB00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8965 22 144 2.30.110.10
3ec6A00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8703 22 144 2.30.110.10
af_Q2FVN7_2_129_2.30.110.10 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8572 21 142 2.30.110.10
2i02B00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8462 21 146 2.30.110.10
ID Description Score Start End GO Terms
AF-A0A519HWY4-F1-model_v4 General stress protein 0.9843 23 178
AF-A0A1H8INP5-F1-model_v4 General stress protein 26 0.9751 12 178
AF-A0A519HWY4-F1-model_v4 General stress protein 0.9714 23 178
AF-A0A4Q3C170-F1-model_v4 deleted 0.9594 61 178
AF-A0A840EGW4-F1-model_v4 General stress protein 26 0.9585 12 178

Map