F298256

General Info

Members Datasets Scaffolds Average Seq Length
194 115 388 754

Family's Representative Sequence

Representative Sequence 3300005436|Ga0070713_100032507|Ga0070713_1000325072
Length 864
Sequence MNRLMRRAVPPAHSRDTWKTTSRPSGRVSPVESDGVVLVMCSDRSRISTTWPSKMIGASVRTAVVGGFSATQSQADAGHAAPSTNTHAADASPAALVIPPIVDQNRRARPHWLVLAGVALISASLLITELSLTRIFSVTMYYHFAFMAISVALFGLSASGVYVFLMRDRWRDVATERLLARHSIAFTIATAGALAVLAHLRIGLTYTPSHIALMALTYLLSALPFFCGGSAISIAISRVSRRVNAIYAADLLGAGLGCLLLMPALNGVGAPNAVLFASIFGGLGATVAAIAAGLFNPLWNVSTTKGHETHAVLFSKWNSFSRIGVYDQPYGAWSLSEKYTGPLPDTHLMDIDSAAGTQIIKFNGDLNTVSYLRYELTALGYRLFDKGFHALVIGTGGGRDLLSALVFGASSIDGVEINPIIVNDVMRGRFREYSGGVYDRPEVHVTVEDGRSFVRRSTTQYDIIQASLVDTWAATAAGAYALSENSLYTTEAFEDYLDHLTDRGVLSISRWVFDGLRLISLAQEAGARRGWNPADRLAIVQQDKVATFLLKKTPYTPVEIDTIAKAASDLGFAVLYLPGRVSPHYGDTRDDYSRLLHAPDRSEFYTRYPLDVTPTTDDRPFFFNTTKLRNHAFVSPVARAIGLSTEHAVNPGAWATGGLTALLVLLGISTLLIVLFVLGPLAITSRAALGRGWLGSLAYFGCLGGAFMLIEVALLQRFVLLLGHPVYSLTVTLFSLLIGTGLGSMLSRRVPDAHVRAAAVIACLAVAAIGLLWATVLPGLVRAAIASGLGRLLAERQPQLIPWAWGMNGALSVLGATLAVFIAMNWGFSVTLVCGAALYAAAALNIGYHSAAAAQKIQPEVKSS

Samples

Sample ID Description Type Environment
1 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
71 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
72 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
73 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
81 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
82 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
83 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
84 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
85 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
86 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
89 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
90 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
91 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
92 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
93 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
94 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
95 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
96 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
97 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
98 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
99 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
100 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
101 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
102 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
107 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
111 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
112 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
113 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
114 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.58
Nodule 0
Rhizoplane 1.55
Rhizosphere 95.36
Stem 0
Stem Tuber 0
Unclassified 7.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070713_100032507 3300005436 Bacteria 4168
2 Ga0070683_100025561 3300005329 Bacteria 5305
3 Ga0070690_100023958 3300005330 Bacteria 3750
4 Ga0070680_100001701 3300005336 Bacteria 16128
5 Ga0070689_100028090 3300005340 Bacteria 4249
6 Ga0070675_100000079 3300005354 Bacteria 56265
7 Ga0070673_100011514 3300005364 Bacteria 6039
8 Ga0070714_100003770 3300005435 Bacteria 11370
9 Ga0070705_100010657 3300005440 Unclassified 4609
10 Ga0070694_100005370 3300005444 Bacteria 7750
11 Ga0070694_100005683 3300005444 Bacteria 7561
12 Ga0070694_100020339 3300005444 Bacteria 4230
13 Ga0070698_100019539 3300005471 Bacteria 7111
14 Ga0070698_100032856 3300005471 Bacteria 5374
15 Ga0070699_100006558 3300005518 Bacteria 10130
16 Ga0070699_100028591 3300005518 Bacteria 4808
17 Ga0070695_100000033 3300005545 Bacteria 52528
18 Ga0070695_100003133 3300005545 Bacteria 9639
19 Ga0070696_100003206 3300005546 Bacteria 10889
20 Ga0070696_100004024 3300005546 Bacteria 9799
21 Ga0070704_100010735 3300005549 Bacteria 5580
22 Ga0068855_100005015 3300005563 Bacteria 16162
23 Ga0068855_100016119 3300005563 Bacteria 8986
24 Ga0068855_100081642 3300005563 Bacteria 3747
25 Ga0068856_100004771 3300005614 Bacteria 13442
26 Ga0070702_100019220 3300005615 Bacteria 3558
27 Ga0068852_100075699 3300005616 Bacteria 2970
28 Ga0068861_100021107 3300005719 Bacteria 4679
29 Ga0068863_100007696 3300005841 Bacteria 10534
30 Ga0068863_100017940 3300005841 Bacteria 6774
31 Ga0068862_100027180 3300005844 Bacteria 4815
32 Ga0081455_10050426 3300005937 Bacteria 3579
33 Ga0075368_10013059 3300006042 Bacteria 3046
34 Ga0075362_10013099 3300006177 Bacteria 3310
35 Ga0075367_10005180 3300006178 Bacteria 6443
36 Ga0097621_100000705 3300006237 Bacteria 23419
37 Ga0097621_100004292 3300006237 Bacteria 9900
38 Ga0097621_100006029 3300006237 Bacteria 8567
39 Ga0068871_100003753 3300006358 Bacteria 10458
40 Ga0075428_100004274 3300006844 Bacteria 15723
41 Ga0075428_100011575 3300006844 Bacteria 9815
42 Ga0075428_100056377 3300006844 Bacteria 4304
43 Ga0075431_100006783 3300006847 Bacteria 11370
44 Ga0075431_100043766 3300006847 Unclassified 4618
45 Ga0075433_10005966 3300006852 Bacteria 9592
46 Ga0075433_10025454 3300006852 Bacteria 5002
47 Ga0075434_100000066 3300006871 Bacteria 54004
48 Ga0075434_100002212 3300006871 Bacteria 16962
49 Ga0075434_100004125 3300006871 Bacteria 13026
50 Ga0075429_100054297 3300006880 Bacteria 3485
51 Ga0075436_100002722 3300006914 Bacteria 12151
52 Ga0075436_100015626 3300006914 Bacteria 5197
53 Ga0075436_100025293 3300006914 Unclassified 4084
54 Ga0075435_100000084 3300007076 Bacteria 49470
55 Ga0075435_100005067 3300007076 Bacteria 9158
56 Ga0075435_100006850 3300007076 Bacteria 8087
57 Ga0075435_100012865 3300007076 Bacteria 6206
58 Ga0075435_100069910 3300007076 Bacteria 2864
59 Ga0105240_10000772 3300009093 Bacteria 58085
60 Ga0105240_10001831 3300009093 Bacteria 35639
61 Ga0105240_10001881 3300009093 Bacteria 34891
62 Ga0105240_10011092 3300009093 Bacteria 12600
63 Ga0105240_10042230 3300009093 Bacteria 5812
64 Ga0105240_10049334 3300009093 Bacteria 5314
65 Ga0111539_10000325 3300009094 Bacteria 58382
66 Ga0111539_10001033 3300009094 Bacteria 36485
67 Ga0111539_10001197 3300009094 Bacteria 34523
68 Ga0111539_10010055 3300009094 Bacteria 11927
69 Ga0111539_10029326 3300009094 Bacteria 6704
70 Ga0111539_10076612 3300009094 Bacteria 3938
71 Ga0111539_10086931 3300009094 Bacteria 3673
72 Ga0105245_10058202 3300009098 Bacteria 3478
73 Ga0114129_10003199 3300009147 Bacteria 22981
74 Ga0114129_10004514 3300009147 Bacteria 19642
75 Ga0114129_10006992 3300009147 Bacteria 16064
76 Ga0114129_10007209 3300009147 Bacteria 15823
77 Ga0114129_10012248 3300009147 Bacteria 12204
78 Ga0114129_10044666 3300009147 Bacteria 6233
79 Ga0114129_10053375 3300009147 Bacteria 5668
80 Ga0114129_10073732 3300009147 Bacteria 4755
81 Ga0105243_10022442 3300009148 Bacteria 4797
82 Ga0105241_10005891 3300009174 Bacteria 9046
83 Ga0105242_10002352 3300009176 Bacteria 14918
84 Ga0105242_10014739 3300009176 Bacteria 6054
85 Ga0105248_10007140 3300009177 Bacteria 12246
86 Ga0105248_10060837 3300009177 Unclassified 4240
87 Ga0105248_10073823 3300009177 Bacteria 3834
88 Ga0105237_10004014 3300009545 Bacteria 17211
89 Ga0105237_10007539 3300009545 Bacteria 11890
90 Ga0105238_10018888 3300009551 Bacteria 7019
91 Ga0105238_10029979 3300009551 Bacteria 5537
92 Ga0157370_10009829 3300013104 Bacteria 10141
93 Ga0157369_10003188 3300013105 Bacteria 19569
94 Ga0157378_10014495 3300013297 Bacteria 6902
95 Ga0207645_10004065 3300025907 Bacteria 10903
96 Ga0207654_10033762 3300025911 Bacteria 2838
97 Ga0207707_10030202 3300025912 Bacteria 4740
98 Ga0207695_10001373 3300025913 Bacteria 41313
99 Ga0207695_10003418 3300025913 Bacteria 22408
100 Ga0207695_10007756 3300025913 Bacteria 13597
101 Ga0207695_10019489 3300025913 Bacteria 7812
102 Ga0207695_10024179 3300025913 Bacteria 6842
103 Ga0207671_10007607 3300025914 Bacteria 9374
104 Ga0207671_10017144 3300025914 Bacteria 5597
105 Ga0207660_10003898 3300025917 Bacteria 9724
106 Ga0207657_10004098 3300025919 Bacteria 15473
107 Ga0207657_10008343 3300025919 Bacteria 10526
108 Ga0207681_10009496 3300025923 Bacteria 5944
109 Ga0207659_10000628 3300025926 Bacteria 20952
110 Ga0207700_10044729 3300025928 Unclassified 3262
111 Ga0207670_10033252 3300025936 Bacteria 3321
112 Ga0207689_10013206 3300025942 Bacteria 7049
113 Ga0207667_10105367 3300025949 Bacteria 2909
114 Ga0207667_10122669 3300025949 Unclassified 2677
115 Ga0207651_10019074 3300025960 Bacteria 4099
116 Ga0207639_10044172 3300026041 Unclassified 3350
117 Ga0207641_10018950 3300026088 Bacteria 5645
118 Ga0207641_10041795 3300026088 Bacteria 3844
119 Ga0207674_10014225 3300026116 Bacteria 8793
120 Ga0207675_100007372 3300026118 Bacteria 10395
121 Ga0207428_10000207 3300027907 Bacteria 81801
122 Ga0207428_10000384 3300027907 Bacteria 55472
123 Ga0207428_10003027 3300027907 Bacteria 16548
124 Ga0268266_10009650 3300028379 Bacteria 8488
125 Ga0268265_10050598 3300028380 Bacteria 3131
126 Ga0265338_10022706 3300028800 Bacteria 6480
127 Ga0265331_10010651 3300031250 Bacteria 5073
128 Ga0265316_10001778 3300031344 Bacteria 22735
129 Ga0307408_100027382 3300031548 Bacteria 3927
130 Ga0265314_10015856 3300031711 Bacteria 5968
131 Ga0316576_10034991 3300031727 Bacteria 3583
132 Ga0307405_10010357 3300031731 Bacteria 4826
133 Ga0307406_10036147 3300031901 Bacteria 3041
134 Ga0307412_10004007 3300031911 Bacteria 8210
135 Ga0307416_100004782 3300032002 Bacteria 8225
136 Ga0307416_100008104 3300032002 Bacteria 6744
137 Ga0307416_100028442 3300032002 Bacteria 4157
138 Ga0307411_10004009 3300032005 Bacteria 6962
139 Ga0307415_100004562 3300032126 Bacteria 7215
140 Ga0373924_0001943 3300035410 Bacteria 6877
141 Ga0373927_0004022 3300035695 Bacteria 10400
142 Ga0373927_0004625 3300035695 Bacteria 9595
143 Ga0373927_0017726 3300035695 Unclassified 4684
144 Ga0373947_0000895 3300035725 Bacteria 18055
145 Ga0373947_0009730 3300035725 Bacteria 5517
146 Ga0373947_0014114 3300035725 Unclassified 4580
147 Ga0373937_0028322 3300036401 Bacteria 5068
148 Ga0316584_0001239 3300036712 Bacteria 15088
149 Ga0373925_0000143 3300037068 Bacteria 76104
150 Ga0373925_0001159 3300037068 Bacteria 23352
151 Ga0373925_0002708 3300037068 Bacteria 14040
152 Ga0436364_1221927 3300037853 Bacteria 3880
153 Ga0495592_0006655 3300046454 Bacteria 8616
154 Ga0495580_0012486 3300046472 Bacteria 6511
155 Ga0495580_0019888 3300046472 Bacteria 4979
156 Ga0495580_0030001 3300046472 Bacteria 3942
157 Ga0495584_0014599 3300046491 Bacteria 4003
158 Ga0495594_0022501 3300046499 Bacteria 3372
159 Ga0495608_0022301 3300046511 Unclassified 4341
160 Ga0495628_0047450 3300046516 Unclassified 3407
161 Ga0495643_0002671 3300046522 Bacteria 13793
162 Ga0495665_0034871 3300046531 Unclassified 2691
163 Ga0495613_0003254 3300046689 Bacteria 12146
164 Ga0495674_0013787 3300047319 Bacteria 7587
165 Ga0495674_0027765 3300047319 Bacteria 5168
166 Ga0496100_0003954 3300048903 Bacteria 7791
167 Ga0496101_0000261 3300048904 Bacteria 37482
168 Ga0496109_0083820 3300048912 Unclassified 2940
169 Ga0501040_0004255 3300049576 Bacteria 9315
170 Ga0501079_0013398 3300049741 Bacteria 6254
171 Ga0501081_0038937 3300049743 Bacteria 3251
172 Ga0501044_0011035 3300049823 Bacteria 9803
173 nmdc:mga00v17_33522_c1 3300050491 Bacteria 3043
174 nmdc:mga0k408_11027_c1 3300050493 Bacteria 4907
175 nmdc:mga05p37_131768_c1 3300050507 Bacteria 3067
176 nmdc:mga05p37_3632_c1 3300050507 Bacteria 18032
177 nmdc:mga05p37_62098_c1 3300050507 Bacteria 4599
178 nmdc:mga08y16_12_c1 3300050511 Bacteria 438455
179 nmdc:mga08y16_445_c1 3300050511 Bacteria 38283
180 nmdc:mga08y16_6185_c1 3300050511 Bacteria 12562
181 nmdc:mga08y16_72365_c1 3300050511 Bacteria 3592
182 nmdc:mga0n895_2018_c1 3300050512 Bacteria 15602
183 nmdc:mga0n895_20833_c1 3300050512 Bacteria 6124
184 nmdc:mga0n895_46_c1 3300050512 Bacteria 73853
185 nmdc:mga0rr50_17560_c1 3300050513 Bacteria 4780
186 nmdc:mga0rr50_23230_c1 3300050513 Bacteria 4272
187 nmdc:mga0rr50_2_c1 3300050513 Bacteria 373938
188 nmdc:mga0rr50_6768_c1 3300050513 Bacteria 7020
189 nmdc:mga08x19_11992_c1 3300050514 Bacteria 5216
190 nmdc:mga08x19_340_c1 3300050514 Bacteria 33767
191 nmdc:mga08x19_48537_c1 3300050514 Unclassified 2720
192 nmdc:mga0a205_4586_c1 3300050515 Bacteria 12393
193 Ga0495601_0004400 3300053077 Bacteria 8142
194 Ga0501082_0000562 3300060353 Bacteria 32961
195 Ga0070713_100032507
196 Ga0070683_100025561
197 Ga0070690_100023958
198 Ga0070680_100001701
199 Ga0070689_100028090
200 Ga0070675_100000079
201 Ga0070673_100011514
202 Ga0070714_100003770
203 Ga0070705_100010657
204 Ga0070694_100005370
205 Ga0070694_100005683
206 Ga0070694_100020339
207 Ga0070698_100019539
208 Ga0070698_100032856
209 Ga0070699_100006558
210 Ga0070699_100028591
211 Ga0070695_100000033
212 Ga0070695_100003133
213 Ga0070696_100003206
214 Ga0070696_100004024
215 Ga0070704_100010735
216 Ga0068855_100005015
217 Ga0068855_100016119
218 Ga0068855_100081642
219 Ga0068856_100004771
220 Ga0070702_100019220
221 Ga0068852_100075699
222 Ga0068861_100021107
223 Ga0068863_100007696
224 Ga0068863_100017940
225 Ga0068862_100027180
226 Ga0081455_10050426
227 Ga0075368_10013059
228 Ga0075362_10013099
229 Ga0075367_10005180
230 Ga0097621_100000705
231 Ga0097621_100004292
232 Ga0097621_100006029
233 Ga0068871_100003753
234 Ga0075428_100004274
235 Ga0075428_100011575
236 Ga0075428_100056377
237 Ga0075431_100006783
238 Ga0075431_100043766
239 Ga0075433_10005966
240 Ga0075433_10025454
241 Ga0075434_100000066
242 Ga0075434_100002212
243 Ga0075434_100004125
244 Ga0075429_100054297
245 Ga0075436_100002722
246 Ga0075436_100015626
247 Ga0075436_100025293
248 Ga0075435_100000084
249 Ga0075435_100005067
250 Ga0075435_100006850
251 Ga0075435_100012865
252 Ga0075435_100069910
253 Ga0105240_10000772
254 Ga0105240_10001831
255 Ga0105240_10001881
256 Ga0105240_10011092
257 Ga0105240_10042230
258 Ga0105240_10049334
259 Ga0111539_10000325
260 Ga0111539_10001033
261 Ga0111539_10001197
262 Ga0111539_10010055
263 Ga0111539_10029326
264 Ga0111539_10076612
265 Ga0111539_10086931
266 Ga0105245_10058202
267 Ga0114129_10003199
268 Ga0114129_10004514
269 Ga0114129_10006992
270 Ga0114129_10007209
271 Ga0114129_10012248
272 Ga0114129_10044666
273 Ga0114129_10053375
274 Ga0114129_10073732
275 Ga0105243_10022442
276 Ga0105241_10005891
277 Ga0105242_10002352
278 Ga0105242_10014739
279 Ga0105248_10007140
280 Ga0105248_10060837
281 Ga0105248_10073823
282 Ga0105237_10004014
283 Ga0105237_10007539
284 Ga0105238_10018888
285 Ga0105238_10029979
286 Ga0157370_10009829
287 Ga0157369_10003188
288 Ga0157378_10014495
289 Ga0207645_10004065
290 Ga0207654_10033762
291 Ga0207707_10030202
292 Ga0207695_10001373
293 Ga0207695_10003418
294 Ga0207695_10007756
295 Ga0207695_10019489
296 Ga0207695_10024179
297 Ga0207671_10007607
298 Ga0207671_10017144
299 Ga0207660_10003898
300 Ga0207657_10004098
301 Ga0207657_10008343
302 Ga0207681_10009496
303 Ga0207659_10000628
304 Ga0207700_10044729
305 Ga0207670_10033252
306 Ga0207689_10013206
307 Ga0207667_10105367
308 Ga0207667_10122669
309 Ga0207651_10019074
310 Ga0207639_10044172
311 Ga0207641_10018950
312 Ga0207641_10041795
313 Ga0207674_10014225
314 Ga0207675_100007372
315 Ga0207428_10000207
316 Ga0207428_10000384
317 Ga0207428_10003027
318 Ga0268266_10009650
319 Ga0268265_10050598
320 Ga0265338_10022706
321 Ga0265331_10010651
322 Ga0265316_10001778
323 Ga0307408_100027382
324 Ga0265314_10015856
325 Ga0316576_10034991
326 Ga0307405_10010357
327 Ga0307406_10036147
328 Ga0307412_10004007
329 Ga0307416_100004782
330 Ga0307416_100008104
331 Ga0307416_100028442
332 Ga0307411_10004009
333 Ga0307415_100004562
334 Ga0373924_0001943
335 Ga0373927_0004022
336 Ga0373927_0004625
337 Ga0373927_0017726
338 Ga0373947_0000895
339 Ga0373947_0009730
340 Ga0373947_0014114
341 Ga0373937_0028322
342 Ga0316584_0001239
343 Ga0373925_0000143
344 Ga0373925_0001159
345 Ga0373925_0002708
346 Ga0436364_1221927
347 Ga0495592_0006655
348 Ga0495580_0012486
349 Ga0495580_0019888
350 Ga0495580_0030001
351 Ga0495584_0014599
352 Ga0495594_0022501
353 Ga0495608_0022301
354 Ga0495628_0047450
355 Ga0495643_0002671
356 Ga0495665_0034871
357 Ga0495613_0003254
358 Ga0495674_0013787
359 Ga0495674_0027765
360 Ga0496100_0003954
361 Ga0496101_0000261
362 Ga0496109_0083820
363 Ga0501040_0004255
364 Ga0501079_0013398
365 Ga0501081_0038937
366 Ga0501044_0011035
367 nmdc:mga00v17_33522_c1
368 nmdc:mga0k408_11027_c1
369 nmdc:mga05p37_131768_c1
370 nmdc:mga05p37_3632_c1
371 nmdc:mga05p37_62098_c1
372 nmdc:mga08y16_12_c1
373 nmdc:mga08y16_445_c1
374 nmdc:mga08y16_6185_c1
375 nmdc:mga08y16_72365_c1
376 nmdc:mga0n895_2018_c1
377 nmdc:mga0n895_20833_c1
378 nmdc:mga0n895_46_c1
379 nmdc:mga0rr50_17560_c1
380 nmdc:mga0rr50_23230_c1
381 nmdc:mga0rr50_2_c1
382 nmdc:mga0rr50_6768_c1
383 nmdc:mga08x19_11992_c1
384 nmdc:mga08x19_340_c1
385 nmdc:mga08x19_48537_c1
386 nmdc:mga0a205_4586_c1
387 Ga0495601_0004400
388 Ga0501082_0000562

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01564

Spermine_synth

Spermine/spermidine synthase domain

375

510

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
3grz-assembly1.cif.gz_B crystal structure of ribosomal protein l11 methylase from lactobacillus delbrueckii subsp. bulgaricus 0.7676 289 473
2esr-assembly1.cif.gz_B conserved hypothetical protein- streptococcus pyogenes 0.7396 306 473
7v6h-assembly2.cif.gz_B crystal structure of the spnl 0.7364 294 433
5y4q-assembly2.cif.gz_D crystal structure of trypanosoma cruzi spermidine synthase in complex with n-(4-methoxyphenyl)quinolin-4-amine 0.7341 229 472
5y4p-assembly2.cif.gz_D crystal structure of trypanosoma cruzi spermidine synthase in complex with 5-methoxy-2-(5-methyl-4,5-dihydro-1h-imidazol-2-yl)phenol 0.7338 229 474
ID Description Score Start End Superfamily
3grzB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7676 289 473 3.40.50.150
af_Q9GZF8_8_143_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7594 301 428 3.40.50.150
af_Q4CXJ6_69_296_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.748 295 472 3.40.50.150
3grzA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7477 294 473 3.40.50.150
af_B4E3X6_90_272_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7359 295 476 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A7Y2B496-F1-model_v4 SAM-dependent methyltransferase 0.9143 10 772 GO:0006596
GO:0016020
AF-A0A2A5DJ27-F1-model_v4 Spermidine synthase 0.91 10 777 GO:0006596
GO:0016020
AF-A0A2V9VT46-F1-model_v4 Spermidine synthase 0.9097 13 167 GO:0016020
AF-A0A2A5DJ27-F1-model_v4 Spermidine synthase 0.8987 10 777 GO:0006596
GO:0016020
AF-A0A7C3VXI9-F1-model_v4 SAM-dependent methyltransferase 0.8985 10 775 GO:0016020

Map