F296441

General Info

Members Datasets Scaffolds Average Seq Length
192 166 115 363

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2984601300|2984604723
Length 397
Sequence LGPSAVFESDSVFPCLGSPHALKEQKVNFGDIMSDTAAPALKEIFNHEKLQHIADQTRAVHPPFDVSAFMALATENLEALGIMQRMRQVATSLHATLPGDYARNIEILTAAAPGIGNGFASISLPEYVALYGLDDFDLSMDALQYFTRFGSSEFAIRHFLQKDLTATLAVMETWSRHENEHVRRLASEGCRPRLPWSFQLKPLIDDPSPVTAILDTMKADQALYVRKSVANHLNDITKDNPAFVLALIDGWPKDNPHTRWIMRQALRTLIKKGDTAALAHLGAHEEAQITLAAFEVLPAKVALGNPVRISASFTSTAKSRQKLVIDYAVHYVKKSGDASAKVFKWKEVELPPGETCKLSISRAIRDFTTRKHYPGVHRVDLVINGRLIAESAFELLF

Samples

Sample ID Description Type Environment
1 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
2 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
3 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
4 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
5 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
6 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
7 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
8 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
9 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
10 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
11 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
12 2599185307 Pseudomonas sp. NFACC02 Isolate Rhizoplane
13 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
14 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
15 2643221582 Rhizobium sp. Root651 Isolate Unclassified
16 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
17 2643221693 Rhizobium sp. Root491 Isolate Unclassified
18 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
19 2738543024 Aminobacter sp. AP02 Isolate Unclassified
20 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
21 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
22 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
23 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
24 2831864461 Roseateles noduli HZ7 Isolate Nodule
25 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
26 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
27 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
28 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
29 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
30 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
31 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
32 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
33 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
34 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
35 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
36 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
37 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
38 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
39 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
40 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
41 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
42 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
43 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
44 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
45 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
46 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
47 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
48 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
49 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
50 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
51 2922554459 Rhodococcus sp. 66b Isolate Unclassified
52 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
53 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
54 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
55 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
56 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
57 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
58 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
59 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
60 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
61 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
62 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
63 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
64 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
65 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
66 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
67 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
68 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
69 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
70 3007395558 Pseudomonas chlororaphis PCL1601 Isolate Rhizosphere
71 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
72 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
73 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
74 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
75 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
76 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
77 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
78 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
79 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
80 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
81 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
82 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
83 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
84 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
85 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
86 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
87 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
88 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
89 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
90 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
91 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
92 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
93 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
94 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
95 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
96 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
97 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
98 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
99 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
100 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
102 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
103 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
104 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
105 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
106 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
107 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
110 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
111 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
112 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
113 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
115 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
116 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
117 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
118 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
119 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
120 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
121 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
122 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
123 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
124 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
125 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
126 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
127 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
128 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
129 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
130 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
131 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
132 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
133 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
134 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
135 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
136 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
137 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
138 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
139 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
140 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
141 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
142 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
143 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
144 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
145 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
148 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
149 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
150 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
151 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
152 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
153 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
154 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
155 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
156 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
157 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
158 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
159 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
160 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
161 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified
162 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
163 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
164 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
165 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
166 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60.42
Metatranscriptomes 0
Isolates 39.58

Biome Distribution

Category Percentage (%)
Aerial Root 2.08
Bulb 0
Endosphere 19.79
Nodule 16.15
Rhizoplane 4.17
Rhizosphere 30.73
Stem 0
Stem Tuber 0
Unclassified 27.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10033382 3300003187 Bacteria 1983
2 rootH2_10055440 3300003320 Bacteria 2052
3 rootH1_10166522 3300003323 Bacteria 2144
4 Ga0055526_1000906 3300003771 Bacteria 22039
5 Ga0055531_10001544 3300003794 Bacteria 16864
6 Ga0058692_1001955 3300003856 Bacteria 7181
7 Ga0058692_1002400 3300003856 Bacteria 6280
8 Ga0055543_1005136 3300004625 Bacteria 3401
9 Ga0065165_1000153 3300005262 Bacteria 120209
10 Ga0065165_1000569 3300005262 Bacteria 54781
11 Ga0068869_100000021 3300005334 Bacteria 66278
12 Ga0070669_100082206 3300005353 Bacteria 2401
13 Ga0070714_100190298 3300005435 Bacteria 1872
14 Ga0070665_100011379 3300005548 Bacteria 8996
15 Ga0070665_100055950 3300005548 Bacteria 3956
16 Ga0068854_100195428 3300005578 Bacteria 1587
17 Ga0075368_10012400 3300006042 Bacteria 3115
18 Ga0075364_10000619 3300006051 Bacteria 18320
19 Ga0075369_10060731 3300006186 Bacteria 1649
20 Ga0075366_10017546 3300006195 Bacteria 4120
21 Ga0097621_100016803 3300006237 Bacteria 5544
22 Ga0075370_10029590 3300006353 Bacteria 3051
23 Ga0075370_10108689 3300006353 Bacteria 1609
24 Ga0068871_100011905 3300006358 Bacteria 6402
25 Ga0068865_100031979 3300006881 Bacteria 3512
26 Ga0079104_1000063 3300006946 Bacteria 159519
27 Ga0099826_10000590 3300006948 Bacteria 18363
28 Ga0099826_10006096 3300006948 Bacteria 8735
29 Ga0105246_10100055 3300011119 Bacteria 2109
30 Ga0157319_1000016 3300012497 Bacteria 127256
31 Ga0157373_10013416 3300013100 Bacteria 6011
32 Ga0157371_10000002 3300013102 Bacteria 665040
33 Ga0157370_10000143 3300013104 Bacteria 87289
34 Ga0157380_10075982 3300014326 Bacteria 2732
35 Ga0209566_101256 3300025225 Bacteria 8588
36 Ga0209025_1001475 3300025294 Bacteria 30611
37 Ga0209564_1000008 3300025295 Bacteria 953227
38 Ga0209758_1000105 3300025297 Bacteria 221415
39 Ga0209758_1013427 3300025297 Bacteria 4465
40 Ga0209050_1000297 3300025298 Bacteria 104630
41 Ga0209050_1005092 3300025298 Bacteria 8474
42 Ga0209051_1001021 3300025303 Bacteria 26776
43 Ga0209257_1000984 3300025304 Bacteria 38671
44 Ga0207689_10000195 3300025942 Bacteria 53117
45 Ga0207648_10048736 3300026089 Bacteria 3708
46 Ga0209281_1000110 3300027111 Bacteria 215631
47 Ga0209371_1000003 3300027312 Bacteria 1122971
48 Ga0209371_1001357 3300027312 Bacteria 16945
49 Ga0209282_1001047 3300027666 Bacteria 14588
50 Ga0209282_1030235 3300027666 Bacteria 3337
51 Ga0209813_10001466 3300027866 Bacteria 5309
52 Ga0268266_10005338 3300028379 Bacteria 12023
53 Ga0268256_1000004 3300030500 Bacteria 1122967
54 Ga0316181_1162322 3300030744 Bacteria 3206
55 Ga0265320_10000819 3300031240 Bacteria 23457
56 Ga0307408_100002197 3300031548 Bacteria 13950
57 Ga0265314_10181851 3300031711 Unclassified 1259
58 Ga0316577_10006772 3300031733 Bacteria 6080
59 Ga0307406_10001876 3300031901 Bacteria 11474
60 Ga0307406_10116986 3300031901 Bacteria 1846
61 Ga0453683_0006321 3300044673 Bacteria 8136
62 Ga0451576_0035103 3300045051 Bacteria 5322
63 Ga0495605_0001317 3300046474 Bacteria 16435
64 Ga0495607_0003139 3300046501 Bacteria 12821
65 Ga0495607_0014709 3300046501 Bacteria 5086
66 Ga0495606_0008102 3300046507 Bacteria 9215
67 Ga0495620_0005670 3300046515 Bacteria 6948
68 Ga0495643_0000290 3300046522 Bacteria 71544
69 Ga0495654_0000121 3300046530 Bacteria 86743
70 Ga0495633_0053033 3300046558 Bacteria 1909
71 Ga0495588_0001686 3300046674 Bacteria 9404
72 Ga0495672_0002472 3300047320 Bacteria 16974
73 Ga0495681_0003679 3300047470 Bacteria 10645
74 Ga0496108_0039378 3300048911 Bacteria 3940
75 Ga0496110_0079837 3300048913 Bacteria 2914
76 Ga0496111_0166102 3300048914 Bacteria 1639
77 Ga0496116_0010207 3300048919 Bacteria 7900
78 Ga0496116_0048456 3300048919 Bacteria 2851
79 Ga0496117_0000016 3300048920 Bacteria 523642
80 Ga0496117_0027734 3300048920 Bacteria 4403
81 Ga0496118_0002108 3300048921 Bacteria 27877
82 Ga0496118_0023918 3300048921 Bacteria 5289
83 Ga0496120_0000164 3300048923 Bacteria 111959
84 Ga0496120_0113649 3300048923 Bacteria 1410
85 Ga0496121_0000003 3300048924 Bacteria 1191431
86 Ga0496121_0000180 3300048924 Bacteria 141128
87 Ga0496122_0000002 3300048925 Bacteria 905834
88 Ga0496123_0000002 3300048926 Bacteria 1811682
89 Ga0496123_0037566 3300048926 Bacteria 3417
90 Ga0496124_0018204 3300048927 Bacteria 6587
91 Ga0496124_0046918 3300048927 Bacteria 3698
92 Ga0496124_0075246 3300048927 Bacteria 2789
93 Ga0496124_0076276 3300048927 Bacteria 2767
94 Ga0496124_0112058 3300048927 Bacteria 2194
95 Ga0496125_0000200 3300048928 Bacteria 126369
96 Ga0496125_0062197 3300048928 Bacteria 2987
97 Ga0496126_0056179 3300048929 Bacteria 3559
98 Ga0496126_0213040 3300048929 Bacteria 1625
99 Ga0501080_0119113 3300049742 Bacteria 2447
100 nmdc:mga00v17_53_c1 3300050491 Bacteria 72424
101 nmdc:mga00v17_60228_c1 3300050491 Bacteria 2331
102 nmdc:mga0yw44_115_c1 3300050492 Bacteria 24900
103 nmdc:mga06z11_14049_c1 3300050494 Bacteria 3535
104 nmdc:mga07m45_25418_c2 3300050496 Bacteria 1777
105 nmdc:mga0sz30_6385_c1 3300050516 Bacteria 4376
106 Ga0500556_0011256 3300053104 Bacteria 2646
107 Ga0500560_000068 3300053107 Bacteria 10023
108 Ga0500618_000171 3300053125 Bacteria 54421
109 Ga0500561_0000136 3300053137 Bacteria 14068
110 Ga0500568_0000035 3300053139 Bacteria 137912
111 Ga0500568_0027117 3300053139 Bacteria 2398
112 Ga0500616_0001649 3300053153 Bacteria 20642
113 Ga0500622_0001845 3300053156 Bacteria 16037
114 Ga0500624_001293 3300053157 Bacteria 4321
115 Ga0500634_0002361 3300053161 Bacteria 7920

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048928 Ga0496125_0062197 Ga0496125_0062197_1984_2961 318
2 3300048923 Ga0496120_0113649 Ga0496120_0113649_394_1380 328
3 3300025225 Ga0209566_101256 Ga0209566_1012566 331
4 3300005334 Ga0068869_100000021 Ga0068869_10000002115 335
5 3300006237 Ga0097621_100016803 Ga0097621_1000168036 335
6 3300006358 Ga0068871_100011905 Ga0068871_1000119056 335
7 3300006881 Ga0068865_100031979 Ga0068865_1000319792 335
8 3300025942 Ga0207689_10000195 Ga0207689_100001955 335
9 3300026089 Ga0207648_10048736 Ga0207648_100487362 335
10 iso_pu_bacteria 2738543024 2739307607 345
11 3300048927 Ga0496124_0046918 Ga0496124_0046918_1700_2836 349
12 iso_pu_bacteria 2540341094 2540606117 351
13 iso_pu_bacteria 2969765954 2969768315 351
14 3300005435 Ga0070714_100190298 Ga0070714_1001902983 353
15 iso_pu_bacteria 646564506 646813436 353
16 iso_pu_bacteria 2929206907 2929211404 354
17 iso_pu_bacteria 2946080515 2946083540 354
18 iso_pu_bacteria 2565956761 2566995653 355
19 iso_pu_bacteria 2738541308 2738888581 355
20 iso_pu_bacteria 2904535858 2904537731 355
21 iso_pu_bacteria 2922554459 2922556922 355
22 iso_pu_bacteria 2925326138 2925331238 355
23 iso_pu_bacteria 8002317523 8002322699 356
24 iso_pu_bacteria 8046991243 8046993240 356
25 3300031733 Ga0316577_10006772 Ga0316577_100067726 357
26 3300049742 Ga0501080_0119113 Ga0501080_0119113_251_1375 357
27 3300031901 Ga0307406_10001876 Ga0307406_100018762 358
28 3300048911 Ga0496108_0039378 Ga0496108_0039378_1244_2344 359
29 iso_pu_bacteria 2599185307 2599973814 359
30 iso_pu_bacteria 2842140634 2842142188 359
31 3300003323 rootH1_10166522 rootH1_101665223 360
32 3300044673 Ga0453683_0006321 Ga0453683_0006321_481_1575 360
33 3300045051 Ga0451576_0035103 Ga0451576_0035103_3992_5086 360
34 3300048919 Ga0496116_0048456 Ga0496116_0048456_1021_2157 360
35 3300005353 Ga0070669_100082206 Ga0070669_1000822063 361
36 3300014326 Ga0157380_10075982 Ga0157380_100759823 361
37 3300031240 Ga0265320_10000819 Ga0265320_100008192 361
38 3300031711 Ga0265314_10181851 Ga0265314_101818511 361
39 3300031901 Ga0307406_10116986 Ga0307406_101169862 361
40 iso_pu_bacteria 2537561587 2537875804 361
41 iso_pu_bacteria 2554235003 2554245393 361
42 iso_pu_bacteria 2558860242 2559296778 361
43 iso_pu_bacteria 2599185210 2599602731 361
44 iso_pu_bacteria 2600255279 2601610352 361
45 iso_pu_bacteria 2600255308 2601747318 361
46 iso_pu_bacteria 2643221582 2643917245 361
47 iso_pu_bacteria 2643221693 2644520905 361
48 iso_pu_bacteria 2808606387 2808987231 361
49 iso_pu_bacteria 2818991439 2819557433 361
50 iso_pu_bacteria 2838675328 2838678061 361
51 iso_pu_bacteria 2838714209 2838717033 361
52 iso_pu_bacteria 2838719591 2838722356 361
53 iso_pu_bacteria 2838724970 2838727782 361
54 iso_pu_bacteria 2841846520 2841849439 361
55 iso_pu_bacteria 2841859092 2841861519 361
56 iso_pu_bacteria 2842124991 2842127812 361
57 iso_pu_bacteria 2842130223 2842132954 361
58 iso_pu_bacteria 2842152218 2842154947 361
59 iso_pu_bacteria 2842170452 2842173446 361
60 iso_pu_bacteria 2842175837 2842178568 361
61 iso_pu_bacteria 2842187318 2842190141 361
62 iso_pu_bacteria 2842211629 2842214455 361
63 iso_pu_bacteria 2842224351 2842227174 361
64 iso_pu_bacteria 2842515876 2842518215 361
65 iso_pu_bacteria 2899792073 2899792641 361
66 iso_pu_bacteria 2899845264 2899850085 361
67 iso_pu_bacteria 2919114240 2919117291 361
68 iso_pu_bacteria 2926754445 2926758738 361
69 iso_pu_bacteria 2926760298 2926763731 361
70 iso_pu_bacteria 2929138655 2929141470 361
71 iso_pu_bacteria 2933006813 2933009670 361
72 iso_pu_bacteria 2933011516 2933013843 361
73 iso_pu_bacteria 2933594066 2933595657 361
74 iso_pu_bacteria 2979089926 2979091227 361
75 iso_pu_bacteria 2979095461 2979096751 361
76 iso_pu_bacteria 2979100975 2979102473 361
77 iso_pu_bacteria 2984509177 2984509641 361
78 iso_pu_bacteria 2984518228 2984519660 361
79 iso_pu_bacteria 2984537506 2984537978 361
80 iso_pu_bacteria 3007395558 3007401509 361
81 iso_pu_bacteria 650716007 650843200 361
82 iso_pu_bacteria 8003570095 8003572775 361
83 iso_pu_bacteria 2585427633 2585997298 362
84 iso_pu_bacteria 2585427634 2586001906 362
85 iso_pu_bacteria 2818991461 2819686589 362
86 iso_pu_bacteria 2996336353 2996336838 362
87 3300004625 Ga0055543_1005136 Ga0055543_10051361 363
88 3300005262 Ga0065165_1000153 Ga0065165_100015367 363
89 3300046474 Ga0495605_0001317 Ga0495605_0001317_3678_4769 363
90 3300046501 Ga0495607_0003139 Ga0495607_0003139_10431_11522 363
91 3300046501 Ga0495607_0014709 Ga0495607_0014709_1897_2988 363
92 3300046507 Ga0495606_0008102 Ga0495606_0008102_3446_4537 363
93 3300046515 Ga0495620_0005670 Ga0495620_0005670_1794_2885 363
94 3300048913 Ga0496110_0079837 Ga0496110_0079837_1614_2705 363
95 3300048914 Ga0496111_0166102 Ga0496111_0166102_301_1392 363
96 3300048921 Ga0496118_0023918 Ga0496118_0023918_1246_2337 363
97 3300048927 Ga0496124_0112058 Ga0496124_0112058_86_1177 363
98 iso_pu_bacteria 2513237351 2514586434 363
99 3300047320 Ga0495672_0002472 Ga0495672_0002472_11467_12564 364
100 iso_pu_bacteria 2510917026 2511168321 364
101 iso_pu_bacteria 2599185236 2599719964 364
102 iso_pu_bacteria 2643221623 2644130440 364
103 iso_pu_bacteria 2821123053 2821126301 364
104 iso_pu_bacteria 2831864461 2831865530 364
105 iso_pu_bacteria 2838736955 2838737223 364
106 iso_pu_bacteria 2841840854 2841842408 364
107 iso_pu_bacteria 2854896431 2854897418 364
108 iso_pu_bacteria 2854916844 2854921450 364
109 iso_pu_bacteria 2857531043 2857532862 364
110 iso_pu_bacteria 2919171160 2919173592 364
111 iso_pu_bacteria 8002285264 8002290769 364
112 3300003187 JGI25151J46595_10033382 JGI25151J46595_100333822 365
113 3300003320 rootH2_10055440 rootH2_100554402 365
114 3300003771 Ga0055526_1000906 Ga0055526_100090620 365
115 3300003794 Ga0055531_10001544 Ga0055531_100015448 365
116 3300003856 Ga0058692_1001955 Ga0058692_10019556 365
117 3300003856 Ga0058692_1002400 Ga0058692_10024005 365
118 3300005262 Ga0065165_1000569 Ga0065165_100056930 365
119 3300005548 Ga0070665_100011379 Ga0070665_1000113799 365
120 3300005548 Ga0070665_100055950 Ga0070665_1000559502 365
121 3300005578 Ga0068854_100195428 Ga0068854_1001954281 365
122 3300006042 Ga0075368_10012400 Ga0075368_100124003 365
123 3300006051 Ga0075364_10000619 Ga0075364_1000061912 365
124 3300006186 Ga0075369_10060731 Ga0075369_100607312 365
125 3300006195 Ga0075366_10017546 Ga0075366_100175463 365
126 3300006353 Ga0075370_10029590 Ga0075370_100295902 365
127 3300006353 Ga0075370_10108689 Ga0075370_101086892 365
128 3300006946 Ga0079104_1000063 Ga0079104_100006348 365
129 3300006948 Ga0099826_10000590 Ga0099826_100005904 365
130 3300006948 Ga0099826_10006096 Ga0099826_100060963 365
131 3300011119 Ga0105246_10100055 Ga0105246_101000552 365
132 3300012497 Ga0157319_1000016 Ga0157319_100001650 365
133 3300013100 Ga0157373_10013416 Ga0157373_100134163 365
134 3300013102 Ga0157371_10000002 Ga0157371_10000002269 365
135 3300013104 Ga0157370_10000143 Ga0157370_1000014322 365
136 3300025294 Ga0209025_1001475 Ga0209025_10014752 365
137 3300025295 Ga0209564_1000008 Ga0209564_1000008807 365
138 3300025297 Ga0209758_1000105 Ga0209758_1000105105 365
139 3300025297 Ga0209758_1013427 Ga0209758_10134274 365
140 3300025298 Ga0209050_1000297 Ga0209050_10002975 365
141 3300025298 Ga0209050_1005092 Ga0209050_10050927 365
142 3300025303 Ga0209051_1001021 Ga0209051_10010214 365
143 3300025304 Ga0209257_1000984 Ga0209257_100098413 365
144 3300027111 Ga0209281_1000110 Ga0209281_100011049 365
145 3300027312 Ga0209371_1000003 Ga0209371_1000003543 365
146 3300027312 Ga0209371_1001357 Ga0209371_10013573 365
147 3300027666 Ga0209282_1001047 Ga0209282_10010473 365
148 3300027666 Ga0209282_1030235 Ga0209282_10302352 365
149 3300027866 Ga0209813_10001466 Ga0209813_100014664 365
150 3300028379 Ga0268266_10005338 Ga0268266_100053385 365
151 3300030500 Ga0268256_1000004 Ga0268256_1000004508 365
152 3300030744 Ga0316181_1162322 Ga0316181_11623223 365
153 3300031548 Ga0307408_100002197 Ga0307408_1000021979 365
154 3300046522 Ga0495643_0000290 Ga0495643_0000290_59867_60964 365
155 3300046530 Ga0495654_0000121 Ga0495654_0000121_24144_25250 365
156 3300046558 Ga0495633_0053033 Ga0495633_0053033_772_1869 365
157 3300046674 Ga0495588_0001686 Ga0495588_0001686_5654_6751 365
158 3300047470 Ga0495681_0003679 Ga0495681_0003679_2435_3532 365
159 3300048919 Ga0496116_0010207 Ga0496116_0010207_116_1213 365
160 3300048920 Ga0496117_0000016 Ga0496117_0000016_127549_128646 365
161 3300048920 Ga0496117_0027734 Ga0496117_0027734_2693_3790 365
162 3300048921 Ga0496118_0002108 Ga0496118_0002108_17305_18402 365
163 3300048923 Ga0496120_0000164 Ga0496120_0000164_92732_93829 365
164 3300048924 Ga0496121_0000003 Ga0496121_0000003_1100793_1101890 365
165 3300048924 Ga0496121_0000180 Ga0496121_0000180_88995_90101 365
166 3300048925 Ga0496122_0000002 Ga0496122_0000002_128210_129307 365
167 3300048926 Ga0496123_0000002 Ga0496123_0000002_128210_129307 365
168 3300048926 Ga0496123_0000002 Ga0496123_0000002_1682376_1683473 365
169 3300048926 Ga0496123_0037566 Ga0496123_0037566_1782_2879 365
170 3300048927 Ga0496124_0018204 Ga0496124_0018204_4311_5408 365
171 3300048927 Ga0496124_0075246 Ga0496124_0075246_849_1946 365
172 3300048927 Ga0496124_0076276 Ga0496124_0076276_849_1946 365
173 3300048928 Ga0496125_0000200 Ga0496125_0000200_88271_89368 365
174 3300048929 Ga0496126_0056179 Ga0496126_0056179_983_2080 365
175 3300048929 Ga0496126_0213040 Ga0496126_0213040_271_1368 365
176 3300050491 nmdc:mga00v17_53_c1 nmdc:mga00v17_53_c1_60524_61621 365
177 3300050491 nmdc:mga00v17_60228_c1 nmdc:mga00v17_60228_c1_35_1132 365
178 3300050492 nmdc:mga0yw44_115_c1 nmdc:mga0yw44_115_c1_1771_2874 365
179 3300050494 nmdc:mga06z11_14049_c1 nmdc:mga06z11_14049_c1_129_1226 365
180 3300050496 nmdc:mga07m45_25418_c2 nmdc:mga07m45_25418_c2_320_1432 365
181 3300050516 nmdc:mga0sz30_6385_c1 nmdc:mga0sz30_6385_c1_111_1208 365
182 3300053104 Ga0500556_0011256 Ga0500556_0011256_865_1962 365
183 3300053107 Ga0500560_000068 Ga0500560_000068_1687_2784 365
184 3300053125 Ga0500618_000171 Ga0500618_000171_28378_29484 365
185 3300053137 Ga0500561_0000136 Ga0500561_0000136_683_1780 365
186 3300053139 Ga0500568_0000035 Ga0500568_0000035_37683_38789 365
187 3300053139 Ga0500568_0027117 Ga0500568_0027117_955_2100 365
188 3300053153 Ga0500616_0001649 Ga0500616_0001649_19324_20430 365
189 3300053156 Ga0500622_0001845 Ga0500622_0001845_5983_7092 365
190 3300053157 Ga0500624_001293 Ga0500624_001293_2856_3953 365
191 3300053161 Ga0500634_0002361 Ga0500634_0002361_4633_5739 365
192 iso_pu_bacteria 2984601300 2984604723 365

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08713

DNA_alkylation

DNA alkylation repair enzyme

134

269

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vi0-assembly2.cif.gz_B pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an abasic site analog 0.9416 7 365
5vi0-assembly2.cif.gz_B pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an abasic site analog 0.9391 7 365
7zdy-assembly1.cif.gz_Y crystal structure of beta-xylosidase from thermotoga maritima in complex with methyl-beta-d-xylopyranoside 0.8273 255 365
7zgz-assembly1.cif.gz_X crystal structure of beta-xylosidase from thermotoga maritima in complex with methyl-beta-d-xylopyranoside hydrolysed to xylose 0.8252 255 365
6r5n-assembly1.cif.gz_A the crystal structure of glycoside hydrolase bglx from p. aeruginosa in complex with 1-deoxynojirimycin 0.8143 255 364
ID Description Score Start End Superfamily
6m9mA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;ARM repeat domains 0.8375 121 233 1.25.40.290
3l9tA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;ARM repeat domains 0.8336 121 233 1.25.40.290
af_A0A1D6HPB1_249_353_1.25.10.10 Mainly Alpha;Alpha Horseshoe;Leucine-rich Repeat Variant;Leucine-rich Repeat Variant 0.7861 132 229 1.25.10.10
3l9tA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;ARM repeat domains 0.7766 121 233 1.25.40.290
4zo6A03 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.7746 257 363 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A4S0FYN7-F1-model_v4 DNA alkylation repair protein 0.9909 266 365
AF-A0A4S0FYN7-F1-model_v4 DNA alkylation repair protein 0.9811 266 365
AF-A0A7W1UNW2-F1-model_v4 DNA alkylation repair protein 0.9808 6 209
AF-A0A523IQG5-F1-model_v4 DNA alkylation repair protein 0.9786 109 250
AF-A0A5S9MK77-F1-model_v4 Uncharacterized protein 0.9757 55 194

Feature Viewer

pLDDT pTM Quality
94.12 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map