F277319

General Info

Members Datasets Scaffolds Average Seq Length
181 132 158 467

Family's Representative Sequence

Representative Sequence 3300009545|Ga0105237_10000780|Ga0105237_1000078032
Length 506
Sequence MRGLVAFALRVFGLCFFLRPLRESVRATVFFATFEIIIVIMKYLLGLAFLFVFGGSEAQGVSAAGGAAADLHALQQKFVDLRFGMFIHFNIPTFMNQDWADPDASPSIFNPGKLDCNQWAQAAKSAHMSYGCLTTKHHSGFCIWDTKTTDYNVMNSPLKKDVVREYVDAFRAVGLKTCLYYSILDTHHKLRPGFITRQHIEMIKAQLTELMTHYGEITALIIDGWDAPWSRISYDDVPFEEIYRLIKSLQPNCLVMDLNSAKYPPEALFYTDIKSYEQGAGQKISTATNRLPALSCLPLNSAWFWKTDFPTTAVKDPKVLVNEDIVPYNKIYDNFILNVAPNRDGLIDANALAALAEIGRSWKNDGSVAMLPPTEAPIISSNLAKHQPANASWSDDMNIMDFGNDDNFHTSWQSNTTVKEPWYEVELGREKVFNAIVITEDKANVSRYRLEYRSNGVWKPLFNGEKKGRVKIHRFDQVWGDGVRMKIEGFETPPAIAEFGVYEERR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
3 2738541283 Pedobacter sp. OK701 Isolate Unclassified
4 2738543023 Pedobacter sp. OK628 Isolate Unclassified
5 2739367651 Pedobacter sp. OK291 Isolate Unclassified
6 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
7 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
8 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
9 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
10 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
11 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
12 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
13 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
14 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
15 2914759650 Rhizosphaericola mali Isolate Rhizosphere
16 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
17 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
18 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
19 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
20 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
21 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
22 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
23 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
24 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
25 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
26 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
27 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
28 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
29 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
30 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
31 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
32 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
33 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
34 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
35 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
36 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
37 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
38 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
39 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
40 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
41 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
42 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
43 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
44 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
45 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
46 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
47 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
48 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
49 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
50 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
51 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
52 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
53 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
60 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
61 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
62 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
63 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
64 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
67 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
68 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
69 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
70 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
71 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
72 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
73 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
75 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
76 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
77 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
79 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
80 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
83 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
84 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
86 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
97 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
98 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
99 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
100 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
101 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
102 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
105 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
106 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
107 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
108 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
109 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
110 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
111 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
112 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
113 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
114 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
115 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
116 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
117 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
118 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
119 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
120 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
123 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
124 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
125 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
126 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
127 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
128 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
129 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
130 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
131 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
132 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.29
Metatranscriptomes 0
Isolates 12.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.41
Nodule 0
Rhizoplane 0.55
Rhizosphere 56.91
Stem 0
Stem Tuber 0
Unclassified 17.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2566842 2162886007 Bacteria 11626
2 JGI24739J22299_10013896 3300001989 Bacteria 2933
3 JGI24737J22298_10000520 3300001990 Bacteria 13520
4 JGI24735J21928_10000004 3300002067 Bacteria 381713
5 JGI25162J39368_1000889 3300002737 Bacteria 19539
6 JGI25154J39366_1000041 3300002738 Bacteria 144221
7 JGI25164J39214_1001240 3300002772 Bacteria 6794
8 JGI25152J39213_1000125 3300002773 Bacteria 52141
9 JGI25150J39212_1000001 3300002774 Bacteria 1318726
10 JGI25151J46595_10000005 3300003187 Bacteria 431598
11 JGI25165J46597_1000475 3300003214 Bacteria 39442
12 JGI25153J46596_10000018 3300003215 Bacteria 269774
13 JGI25153J46596_10004770 3300003215 Bacteria 7226
14 rootH1_10025434 3300003316 Bacteria 24653
15 rootH1_10086883 3300003316 Bacteria 10546
16 rootH2_10014151 3300003320 Bacteria 7568
17 rootL2_10032706 3300003322 Bacteria 22873
18 rootH1_10206930 3300003323 Bacteria 3819
19 rootH1_10228443 3300003323 Bacteria 3920
20 JGI25160J50197_1003529 3300003354 Bacteria 6971
21 Ga0055535_1001616 3300003761 Bacteria 10563
22 Ga0055542_1003704 3300003762 Bacteria 4000
23 Ga0055530_10001822 3300003791 Bacteria 14718
24 Ga0055531_10000293 3300003794 Bacteria 49990
25 Ga0065165_1002012 3300005262 Bacteria 18982
26 Ga0065165_1013832 3300005262 Bacteria 3175
27 Ga0065714_10007456 3300005288 Bacteria 2994
28 Ga0065714_10011868 3300005288 Bacteria 2802
29 Ga0065704_10070224 3300005289 Bacteria 60921
30 Ga0070666_10050739 3300005335 Bacteria 2791
31 Ga0068853_100000311 3300005539 Bacteria 34271
32 Ga0068855_100000340 3300005563 Bacteria 58104
33 Ga0068857_100128899 3300005577 Bacteria 2281
34 Ga0068852_100171839 3300005616 Bacteria 2032
35 Ga0068860_100000458 3300005843 Bacteria 51184
36 Ga0075366_10019353 3300006195 Bacteria 3938
37 Ga0105240_10000513 3300009093 Bacteria 71427
38 Ga0105240_10000956 3300009093 Bacteria 51571
39 Ga0105240_10001812 3300009093 Bacteria 35949
40 Ga0105240_10011064 3300009093 Bacteria 12618
41 Ga0105241_10032352 3300009174 Bacteria 3921
42 Ga0105237_10000316 3300009545 Bacteria 67633
43 Ga0105237_10000780 3300009545 Bacteria 43609
44 Ga0105237_10007195 3300009545 Bacteria 12218
45 Ga0105237_10071882 3300009545 Bacteria 3453
46 Ga0105238_10016413 3300009551 Bacteria 7497
47 Ga0105238_10080755 3300009551 Bacteria 3241
48 Ga0105239_10000012 3300010375 Bacteria 332279
49 Ga0105239_10000946 3300010375 Bacteria 40900
50 Ga0105239_10019207 3300010375 Bacteria 7550
51 Ga0105239_10071692 3300010375 Bacteria 3806
52 Ga0105239_10075806 3300010375 Bacteria 3698
53 Ga0157373_10002209 3300013100 Bacteria 14730
54 Ga0157371_10001139 3300013102 Bacteria 28616
55 Ga0157371_10046794 3300013102 Bacteria 3076
56 Ga0157371_10056696 3300013102 Bacteria 2779
57 Ga0157370_10013754 3300013104 Bacteria 8317
58 Ga0157370_10120526 3300013104 Bacteria 2449
59 Ga0157370_10137646 3300013104 Bacteria 2275
60 Ga0157370_10207322 3300013104 Bacteria 1817
61 Ga0157369_10000441 3300013105 Bacteria 55264
62 Ga0163162_10000423 3300013306 Bacteria 39010
63 Ga0163162_10006199 3300013306 Bacteria 11585
64 Ga0157372_10167133 3300013307 Bacteria 2544
65 Ga0157375_10254387 3300013308 Bacteria 1918
66 Ga0182006_1000517 3300015261 Bacteria 29422
67 Ga0182006_1003877 3300015261 Bacteria 7501
68 Ga0182007_10000054 3300015262 Bacteria 91906
69 Ga0182005_1000331 3300015265 Bacteria 27698
70 Ga0183373_1005 3300015682 Bacteria 351562
71 Ga0209436_103058 3300025208 Bacteria 4619
72 Ga0207427_100076 3300025231 Bacteria 149885
73 Ga0209437_100008 3300025233 Bacteria 921142
74 Ga0209258_100333 3300025242 Bacteria 70926
75 Ga0207425_1000002 3300025245 Bacteria 1362590
76 Ga0209646_1000122 3300025246 Bacteria 144486
77 Ga0209026_1000631 3300025250 Bacteria 22097
78 Ga0209026_1001753 3300025250 Bacteria 8991
79 Ga0209148_1000129 3300025254 Bacteria 175720
80 Ga0209129_1000002 3300025258 Bacteria 1359086
81 Ga0209233_1000510 3300025261 Bacteria 23011
82 Ga0209455_1007731 3300025272 Bacteria 2997
83 Ga0209676_1000106 3300025292 Bacteria 222576
84 Ga0209025_1000004 3300025294 Bacteria 1361782
85 Ga0209758_1000006 3300025297 Bacteria 1359562
86 Ga0209758_1006267 3300025297 Bacteria 8658
87 Ga0209050_1000174 3300025298 Bacteria 148871
88 Ga0207426_1000530 3300025302 Bacteria 55033
89 Ga0207426_1010546 3300025302 Bacteria 3581
90 Ga0209257_1000025 3300025304 Bacteria 724838
91 Ga0207654_10096132 3300025911 Bacteria 1816
92 Ga0207695_10000084 3300025913 Bacteria 282392
93 Ga0207695_10000445 3300025913 Bacteria 90509
94 Ga0207695_10001796 3300025913 Bacteria 33852
95 Ga0207695_10002236 3300025913 Bacteria 29041
96 Ga0207671_10001772 3300025914 Bacteria 24259
97 Ga0207671_10011445 3300025914 Bacteria 7224
98 Ga0207671_10027133 3300025914 Bacteria 4283
99 Ga0207671_10028396 3300025914 Bacteria 4180
100 Ga0207694_10032185 3300025924 Bacteria 4012
101 Ga0207694_10174625 3300025924 Bacteria 1741
102 Ga0207667_10007712 3300025949 Bacteria 12877
103 Ga0207639_10012845 3300026041 Bacteria 5843
104 Ga0207698_10159816 3300026142 Bacteria 1969
105 Ga0207698_10181450 3300026142 Bacteria 1865
106 Ga0268266_10000016 3300028379 Bacteria 629101
107 Ga0268264_10000072 3300028381 Bacteria 260791
108 Ga0268264_10000642 3300028381 Bacteria 41302
109 Ga0307517_10006315 3300028786 Bacteria 17589
110 Ga0307515_10000001 3300028794 Bacteria 4259510
111 Ga0307515_10236437 3300028794 Bacteria 1607
112 Ga0265327_10000030 3300031251 Bacteria 333531
113 Ga0307408_100026347 3300031548 Unclassified 3993
114 Ga0307412_10000018 3300031911 Bacteria 284374
115 Ga0307510_10000166 3300033180 Bacteria 55520
116 Ga0466972_0000021 3300044658 Bacteria 196266
117 Ga0466972_0010745 3300044658 Bacteria 4595
118 Ga0466970_0000208 3300044765 Bacteria 28733
119 Ga0466957_0078655 3300044842 Bacteria 2051
120 Ga0495638_0032126 3300046460 Bacteria 3368
121 Ga0495650_0000238 3300046471 Bacteria 110217
122 Ga0495585_0000071 3300046492 Bacteria 105916
123 Ga0495606_0000008 3300046507 Bacteria 321373
124 Ga0495606_0007721 3300046507 Bacteria 9529
125 Ga0495606_0065280 3300046507 Bacteria 2313
126 Ga0495610_0001623 3300046512 Bacteria 19780
127 Ga0495648_0016889 3300046524 Bacteria 5245
128 Ga0495633_0002034 3300046558 Bacteria 14599
129 Ga0495611_0000011 3300046648 Bacteria 146643
130 Ga0495611_0012644 3300046648 Bacteria 3589
131 Ga0495625_0000017 3300046660 Bacteria 299728
132 Ga0495625_0000090 3300046660 Bacteria 146944
133 Ga0495649_0000008 3300046694 Bacteria 483706
134 Ga0495660_0029540 3300046810 Bacteria 3092
135 Ga0495687_000004 3300047443 Bacteria 779298
136 Ga0495687_000631 3300047443 Bacteria 40299
137 Ga0495686_0000165 3300047472 Bacteria 125611
138 Ga0496121_0000020 3300048924 Bacteria 498732
139 Ga0496122_0002295 3300048925 Bacteria 27639
140 Ga0496125_0074002 3300048928 Bacteria 2644
141 Ga0501047_0006115 3300049581 Bacteria 11312
142 Ga0501236_002087 3300049670 Bacteria 2280
143 Ga0501257_000128 3300049686 Bacteria 17428
144 Ga0501241_002700 3300049758 Bacteria 3415
145 Ga0501264_000009 3300049761 Bacteria 27868
146 nmdc:mga0k408_13068_c1 3300050493 Bacteria 4546
147 nmdc:mga0k408_66_c1 3300050493 Bacteria 33479
148 nmdc:mga07m45_33488_c1 3300050496 Bacteria 2853
149 Ga0500583_0000674 3300053092 Bacteria 10030
150 Ga0500583_0001760 3300053092 Bacteria 6335
151 Ga0500651_0001387 3300053093 Bacteria 12146
152 Ga0500618_000003 3300053125 Bacteria 338706
153 Ga0500618_003670 3300053125 Bacteria 5183
154 Ga0500622_0000042 3300053156 Bacteria 161253
155 Ga0500622_0000171 3300053156 Bacteria 70062
156 Ga0500622_0002072 3300053156 Bacteria 14943
157 Ga0500622_0003715 3300053156 Bacteria 10001
158 Ga0500622_0055699 3300053156 Bacteria 2025

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005288 Ga0065714_10007456 Ga0065714_100074562 410
2 3300025272 Ga0209455_1007731 Ga0209455_10077313 412
3 3300031251 Ga0265327_10000030 Ga0265327_1000003054 419
4 3300028786 Ga0307517_10006315 Ga0307517_100063153 432
5 3300046660 Ga0495625_0000090 Ga0495625_0000090_74528_75943 432
6 3300025913 Ga0207695_10002236 Ga0207695_1000223621 442
7 3300046460 Ga0495638_0032126 Ga0495638_0032126_305_1648 442
8 iso_pu_bacteria 2914759650 2914762948 444
9 3300049581 Ga0501047_0006115 Ga0501047_0006115_3317_4669 448
10 3300053156 Ga0500622_0000042 Ga0500622_0000042_72108_73463 449
11 3300031548 Ga0307408_100026347 Ga0307408_1000263474 452
12 3300049670 Ga0501236_002087 Ga0501236_002087_146_1561 452
13 3300049686 Ga0501257_000128 Ga0501257_000128_6052_7467 452
14 3300049761 Ga0501264_000009 Ga0501264_000009_24415_25830 452
15 3300002737 JGI25162J39368_1000889 JGI25162J39368_100088910 453
16 3300002772 JGI25164J39214_1001240 JGI25164J39214_10012405 453
17 3300003214 JGI25165J46597_1000475 JGI25165J46597_100047518 453
18 3300015682 Ga0183373_1005 Ga0183373_100517 453
19 3300025231 Ga0207427_100076 Ga0207427_100076125 453
20 3300025233 Ga0209437_100008 Ga0209437_10000822 453
21 3300025261 Ga0209233_1000510 Ga0209233_100051022 453
22 3300009551 Ga0105238_10080755 Ga0105238_100807552 454
23 3300025924 Ga0207694_10174625 Ga0207694_101746252 454
24 3300050493 nmdc:mga0k408_66_c1 nmdc:mga0k408_66_c1_8168_9541 454
25 3300053156 Ga0500622_0003715 Ga0500622_0003715_1864_3267 454
26 3300005539 Ga0068853_100000311 Ga0068853_1000003115 455
27 3300009551 Ga0105238_10016413 Ga0105238_100164132 455
28 3300010375 Ga0105239_10000946 Ga0105239_100009465 455
29 3300013104 Ga0157370_10137646 Ga0157370_101376462 455
30 3300026041 Ga0207639_10012845 Ga0207639_100128452 455
31 3300028794 Ga0307515_10236437 Ga0307515_102364371 456
32 3300053156 Ga0500622_0000171 Ga0500622_0000171_15091_16473 456
33 3300005843 Ga0068860_100000458 Ga0068860_10000045832 457
34 3300009093 Ga0105240_10000513 Ga0105240_1000051339 457
35 3300009093 Ga0105240_10000956 Ga0105240_1000095612 457
36 3300009093 Ga0105240_10001812 Ga0105240_1000181210 457
37 3300009545 Ga0105237_10007195 Ga0105237_100071956 457
38 3300010375 Ga0105239_10019207 Ga0105239_100192072 457
39 3300025913 Ga0207695_10000084 Ga0207695_10000084130 457
40 3300025913 Ga0207695_10000445 Ga0207695_1000044532 457
41 3300025913 Ga0207695_10001796 Ga0207695_1000179620 457
42 3300025914 Ga0207671_10027133 Ga0207671_100271332 457
43 3300028381 Ga0268264_10000642 Ga0268264_1000064214 457
44 3300046648 Ga0495611_0000011 Ga0495611_0000011_27881_29314 457
45 iso_pu_bacteria 2818991442 2819573955 457
46 iso_pu_bacteria 2821136567 2821137268 457
47 iso_pu_bacteria 2852623160 2852624606 457
48 iso_pu_bacteria 2884933994 2884936509 457
49 iso_pu_bacteria 2904467357 2904467991 457
50 iso_pu_bacteria 2911138879 2911141939 457
51 3300002738 JGI25154J39366_1000041 JGI25154J39366_10000415 458
52 3300003215 JGI25153J46596_10004770 JGI25153J46596_100047707 458
53 3300003354 JGI25160J50197_1003529 JGI25160J50197_10035293 458
54 3300005262 Ga0065165_1013832 Ga0065165_10138323 458
55 3300015265 Ga0182005_1000331 Ga0182005_100033118 458
56 3300025208 Ga0209436_103058 Ga0209436_1030582 458
57 3300025246 Ga0209646_1000122 Ga0209646_10001225 458
58 3300025250 Ga0209026_1000631 Ga0209026_100063125 458
59 3300025297 Ga0209758_1006267 Ga0209758_10062675 458
60 3300025302 Ga0207426_1000530 Ga0207426_100053040 458
61 3300025302 Ga0207426_1010546 Ga0207426_10105463 458
62 3300048924 Ga0496121_0000020 Ga0496121_0000020_97842_99233 458
63 3300050496 nmdc:mga07m45_33488_c1 nmdc:mga07m45_33488_c1_1344_2729 458
64 3300053125 Ga0500618_000003 Ga0500618_000003_188540_189955 458
65 iso_pu_bacteria 2929921140 2929925322 458
66 iso_pu_bacteria 8003151029 8003154185 458
67 3300047472 Ga0495686_0000165 Ga0495686_0000165_101631_103025 459
68 3300053156 Ga0500622_0055699 Ga0500622_0055699_290_1684 459
69 3300003316 rootH1_10086883 rootH1_100868838 460
70 3300005335 Ga0070666_10050739 Ga0070666_100507392 460
71 3300005616 Ga0068852_100171839 Ga0068852_1001718391 460
72 3300009093 Ga0105240_10011064 Ga0105240_1001106410 460
73 3300009174 Ga0105241_10032352 Ga0105241_100323522 460
74 3300009545 Ga0105237_10071882 Ga0105237_100718823 460
75 3300010375 Ga0105239_10071692 Ga0105239_100716923 460
76 3300013306 Ga0163162_10000423 Ga0163162_1000042326 460
77 3300013307 Ga0157372_10167133 Ga0157372_101671333 460
78 3300025911 Ga0207654_10096132 Ga0207654_100961322 460
79 3300025914 Ga0207671_10028396 Ga0207671_100283963 460
80 3300025924 Ga0207694_10032185 Ga0207694_100321853 460
81 3300026142 Ga0207698_10159816 Ga0207698_101598162 460
82 3300026142 Ga0207698_10181450 Ga0207698_101814502 460
83 3300028379 Ga0268266_10000016 Ga0268266_10000016335 460
84 3300028381 Ga0268264_10000072 Ga0268264_10000072161 460
85 3300044658 Ga0466972_0010745 Ga0466972_0010745_1220_2671 460
86 3300046524 Ga0495648_0016889 Ga0495648_0016889_1727_3124 460
87 3300046648 Ga0495611_0012644 Ga0495611_0012644_1944_3341 460
88 3300047443 Ga0495687_000004 Ga0495687_000004_465863_467260 460
89 3300053092 Ga0500583_0001760 Ga0500583_0001760_4265_5662 460
90 3300053156 Ga0500622_0002072 Ga0500622_0002072_6702_8099 460
91 iso_pu_bacteria 2929239360 2929241574 460
92 3300009545 Ga0105237_10000780 Ga0105237_1000078032 461
93 3300010375 Ga0105239_10075806 Ga0105239_100758062 461
94 3300025250 Ga0209026_1001753 Ga0209026_10017532 461
95 3300025914 Ga0207671_10001772 Ga0207671_1000177216 461
96 3300033180 Ga0307510_10000166 Ga0307510_100001664 461
97 3300046507 Ga0495606_0065280 Ga0495606_0065280_530_1990 461
98 iso_pu_bacteria 2928078545 2928080792 461
99 iso_pu_bacteria 2928147474 2928151014 461
100 iso_pu_bacteria 2929177148 2929178767 461
101 iso_pu_bacteria 2945977869 2945981166 461
102 iso_pu_bacteria 2946013367 2946019433 461
103 3300002773 JGI25152J39213_1000125 JGI25152J39213_100012525 462
104 3300002774 JGI25150J39212_1000001 JGI25150J39212_10000011179 462
105 3300003187 JGI25151J46595_10000005 JGI25151J46595_1000000519 462
106 3300003215 JGI25153J46596_10000018 JGI25153J46596_10000018215 462
107 3300003320 rootH2_10014151 rootH2_100141512 462
108 3300003322 rootL2_10032706 rootL2_1003270611 462
109 3300003323 rootH1_10228443 rootH1_102284432 462
110 3300003761 Ga0055535_1001616 Ga0055535_10016165 462
111 3300003762 Ga0055542_1003704 Ga0055542_10037043 462
112 3300003794 Ga0055531_10000293 Ga0055531_1000029315 462
113 3300005577 Ga0068857_100128899 Ga0068857_1001288992 462
114 3300025242 Ga0209258_100333 Ga0209258_10033329 462
115 3300025245 Ga0207425_1000002 Ga0207425_100000224 462
116 3300025254 Ga0209148_1000129 Ga0209148_1000129118 462
117 3300025258 Ga0209129_1000002 Ga0209129_100000224 462
118 3300025294 Ga0209025_1000004 Ga0209025_10000041165 462
119 3300025297 Ga0209758_1000006 Ga0209758_10000061165 462
120 3300025304 Ga0209257_1000025 Ga0209257_1000025409 462
121 3300044842 Ga0466957_0078655 Ga0466957_0078655_527_1930 462
122 3300049758 Ga0501241_002700 Ga0501241_002700_1703_3106 462
123 3300001989 JGI24739J22299_10013896 JGI24739J22299_100138962 463
124 3300001990 JGI24737J22298_10000520 JGI24737J22298_100005201 463
125 3300002067 JGI24735J21928_10000004 JGI24735J21928_10000004281 463
126 3300003316 rootH1_10025434 rootH1_1002543412 463
127 3300003323 rootH1_10206930 rootH1_102069302 463
128 3300003791 Ga0055530_10001822 Ga0055530_1000182212 463
129 3300005288 Ga0065714_10011868 Ga0065714_100118683 463
130 3300006195 Ga0075366_10019353 Ga0075366_100193532 463
131 3300009545 Ga0105237_10000316 Ga0105237_1000031646 463
132 3300010375 Ga0105239_10000012 Ga0105239_1000001294 463
133 3300013100 Ga0157373_10002209 Ga0157373_100022094 463
134 3300013102 Ga0157371_10046794 Ga0157371_100467942 463
135 3300013102 Ga0157371_10056696 Ga0157371_100566962 463
136 3300013104 Ga0157370_10120526 Ga0157370_101205261 463
137 3300013104 Ga0157370_10207322 Ga0157370_102073221 463
138 3300013105 Ga0157369_10000441 Ga0157369_1000044134 463
139 3300013306 Ga0163162_10006199 Ga0163162_100061996 463
140 3300013308 Ga0157375_10254387 Ga0157375_102543871 463
141 3300015262 Ga0182007_10000054 Ga0182007_100000547 463
142 3300025292 Ga0209676_1000106 Ga0209676_100010675 463
143 3300025298 Ga0209050_1000174 Ga0209050_100017483 463
144 3300025914 Ga0207671_10011445 Ga0207671_100114456 463
145 3300028794 Ga0307515_10000001 Ga0307515_10000001776 463
146 3300044658 Ga0466972_0000021 Ga0466972_0000021_69754_71154 463
147 3300044765 Ga0466970_0000208 Ga0466970_0000208_3516_4916 463
148 3300046471 Ga0495650_0000238 Ga0495650_0000238_18901_20352 463
149 3300046492 Ga0495585_0000071 Ga0495585_0000071_55405_56856 463
150 3300046507 Ga0495606_0000008 Ga0495606_0000008_254280_255731 463
151 3300046507 Ga0495606_0007721 Ga0495606_0007721_852_2252 463
152 3300046512 Ga0495610_0001623 Ga0495610_0001623_17373_18824 463
153 3300046558 Ga0495633_0002034 Ga0495633_0002034_116_1567 463
154 3300046660 Ga0495625_0000017 Ga0495625_0000017_67970_69421 463
155 3300046694 Ga0495649_0000008 Ga0495649_0000008_320406_321857 463
156 3300046810 Ga0495660_0029540 Ga0495660_0029540_1395_2795 463
157 3300047443 Ga0495687_000631 Ga0495687_000631_35913_37364 463
158 3300050493 nmdc:mga0k408_13068_c1 nmdc:mga0k408_13068_c1_2169_3608 463
159 3300053125 Ga0500618_003670 Ga0500618_003670_3277_4728 463
160 iso_pu_bacteria 2599185184 2599480876 463
161 iso_pu_bacteria 2739367651 2739589809 463
162 iso_pu_bacteria 2842903701 2842906102 463
163 iso_pu_bacteria 2849281842 2849285814 463
164 iso_pu_bacteria 2932082852 2932087632 463
165 3300005262 Ga0065165_1002012 Ga0065165_10020122 464
166 3300005563 Ga0068855_100000340 Ga0068855_10000034032 464
167 3300013104 Ga0157370_10013754 Ga0157370_100137543 464
168 3300025949 Ga0207667_10007712 Ga0207667_1000771214 464
169 3300053092 Ga0500583_0000674 Ga0500583_0000674_1907_3331 464
170 iso_pu_bacteria 2857627736 2857630869 464
171 iso_pu_bacteria 2738541283 2738755233 465
172 iso_pu_bacteria 2738543023 2739304201 465
173 3300015261 Ga0182006_1000517 Ga0182006_100051713 469
174 3300048925 Ga0496122_0002295 Ga0496122_0002295_9412_10908 469
175 3300048928 Ga0496125_0074002 Ga0496125_0074002_134_1630 469
176 2162886007 SwRhRL2b_contig_2566842 SwRhRL2b_0623.00002800 470
177 3300005289 Ga0065704_10070224 Ga0065704_1007022424 470
178 3300013102 Ga0157371_10001139 Ga0157371_1000113918 470
179 3300015261 Ga0182006_1003877 Ga0182006_10038777 470
180 3300031911 Ga0307412_10000018 Ga0307412_10000018247 470
181 3300053093 Ga0500651_0001387 Ga0500651_0001387_9208_10620 470

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22633

F5_F8_type_C_2

NedA-like, galactose-binding domain

402

485

0.88

PF01120

Alpha_L_fucos

Alpha-L-fucosidase

56

367

0.84

PF00754

F5_F8_type_C

F5/8 type C domain

380

499

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
2v72-assembly1.cif.gz_A the structure of the family 32 cbm from c. perfringens nanj in complex with galactose 0.8481 346 467
4a45-assembly1.cif.gz_A cpgh89cbm32-5, from clostridium perfringens, in complex with galnac- beta-1,3-galactose 0.8292 343 467
4a4a-assembly1.cif.gz_A cpgh89 (e483q, e601q), from clostridium perfringens, in complex with its substrate glcnac-alpha-1,4-galactose 0.8174 344 469
2eic-assembly1.cif.gz_A crystal structure of galactose oxidase mutant w290f 0.8151 351 470
1t2x-assembly1.cif.gz_A glactose oxidase c383s mutant identified by directed evolution 0.8148 343 470
ID Description Score Start End Superfamily
2v72A00 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.8481 346 467 2.60.120.260
af_Q7XUR3_364_478_2.60.120.260 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.8215 370 467 2.60.120.260
4a42B00 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.8162 343 467 2.60.120.260
4ozoB02 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.8144 343 467 2.60.120.260
4a42B00 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.8044 343 467 2.60.120.260
ID Description Score Start End GO Terms
AF-A0A5J4S970-F1-model_v4 F5/8 type C domain-containing protein 0.9462 35 470 GO:0004560
GO:0005764
GO:0006004
GO:0016139
AF-A0A5M8NWJ3-F1-model_v4 F5/8 type C domain-containing protein 0.9417 25 469 GO:0000224
GO:0004560
GO:0005829
GO:0005975
GO:0006516
GO:0030246
AF-A0A5J4S970-F1-model_v4 F5/8 type C domain-containing protein 0.9399 35 470 GO:0004560
GO:0005764
GO:0006004
GO:0016139
AF-A0A5J4PJQ1-F1-model_v4 Alpha-L-fucosidase 0.9389 38 322 GO:0004560
GO:0005764
GO:0006004
GO:0016139
AF-A0A4Q3SL03-F1-model_v4 deleted 0.9368 44 396

Feature Viewer

pLDDT pTM Quality
82.81 0.85 High
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Predicted Structure (AlphaFold2)

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