F275832

General Info

Members Datasets Scaffolds Average Seq Length
180 147 358 638

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10003186|Ga0265327_100031864
Length 670
Sequence MVVEVRHRSVTSGSAASFHPGGRLDAMSSRNPHAGSEITDDDATIAAALEDVSIPTLMLSLVHMTGDASLLRGPLKPQGLFLNEVQGYMSEPDKAEVRRIALDAIRAYRDGGCRLPPPPSPEVIREMMSWLVCEDVPEEYVPMMLEEMELDGADARKVELDAGPEARAAFPVVIIGCGQSGLLAGIRLEEAGIPFTIVEKNPKVGGTWFENSYPGCRVDVGNHFYCYSFEPSDHWTEYFARQPEIQAYFAGVMERHGIEPHIRWDTEVVSARWDDGAGSWEVTLRSADGALETLTARAVISAVGQLNRPSLPDIPGIDDFAGAAFHSARWDHSVDYRGKRVAVVGAGASGFQIVPTIAPDVAELTVFQRTAQWMFPNPNYHEKVGPGVQWALRHLPFYGRWYRFLLFWPGCDGGLAAARVDPEWPHQDRAVSATNDITRELFTAWITEQVGDDPELLAKVVPDYPATGKRTLQDNGSWLRALKRPNVELVREGIDHIDAHGVVTASGARHDVDIIVYATGFQANRFLWPMRITGRDGAVLSEQWGDEPSAYLGITVPNFPNLFCMYGPGTNLAHGGSLIFHSECQIRYITGCIKELVEGPHRSMEPRPEVHDAYYERTQRELDGLVWSHPAIRHSWFKNAQGRIHVLSPWRLVDYWAWTREPDLDDFVIR

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
74 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
75 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
76 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
77 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
80 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
81 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
82 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
83 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
84 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
85 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
86 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
87 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
88 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
89 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
90 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
91 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
92 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
93 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
94 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
95 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
96 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
98 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
99 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
100 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
101 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
102 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
103 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
104 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
105 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
106 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
107 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
108 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
109 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
110 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
113 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
114 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
115 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
116 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
117 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
118 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
121 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
122 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
127 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
130 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
131 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
132 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
133 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
134 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
135 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
136 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
137 3300053115 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 endosphere Metagenome Endosphere
138 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
139 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
140 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
141 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
142 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
143 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
144 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
145 2547132424 Nocardia nova SH22a Isolate Unclassified
146 8002775197 Frankia nepalensis CN7 Isolate Nodule
147 8002784119 Frankia sp. AgB1.9 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 98.33
Metatranscriptomes 0
Isolates 1.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.11
Nodule 1.11
Rhizoplane 3.33
Rhizosphere 71.67
Stem 0
Stem Tuber 0
Unclassified 1.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10003186 3300031251 Bacteria 16022
2 Ga0055540_1001621 3300003792 Bacteria 13105
3 Ga0070676_10013587 3300005328 Bacteria 4464
4 Ga0070680_100028043 3300005336 Bacteria 4514
5 Ga0070668_100044536 3300005347 Bacteria 3404
6 Ga0070669_100018941 3300005353 Bacteria 4920
7 Ga0070671_100023541 3300005355 Bacteria 5041
8 Ga0070659_100096961 3300005366 Bacteria 2369
9 Ga0070709_10000652 3300005434 Bacteria 19741
10 Ga0070714_100011280 3300005435 Bacteria 7084
11 Ga0070713_100034104 3300005436 Bacteria 4085
12 Ga0070711_100010281 3300005439 Bacteria 5788
13 Ga0070662_100000761 3300005457 Bacteria 19801
14 Ga0070662_100018970 3300005457 Bacteria 4661
15 Ga0070681_10005167 3300005458 Bacteria 12594
16 Ga0070707_100158201 3300005468 Bacteria 2207
17 Ga0070679_100011081 3300005530 Bacteria 8578
18 Ga0068853_100001355 3300005539 Bacteria 17648
19 Ga0068853_100065991 3300005539 Bacteria 3142
20 Ga0070665_100000078 3300005548 Bacteria 188101
21 Ga0070665_100000467 3300005548 Bacteria 58613
22 Ga0068855_100007230 3300005563 Bacteria 13473
23 Ga0070664_100019811 3300005564 Bacteria 5538
24 Ga0068856_100000505 3300005614 Bacteria 43297
25 Ga0068861_100064200 3300005719 Bacteria 2824
26 Ga0068863_100045931 3300005841 Bacteria 4145
27 Ga0068860_100000101 3300005843 Bacteria 142856
28 Ga0068860_100000334 3300005843 Bacteria 63958
29 Ga0081539_10010595 3300005985 Bacteria 7450
30 Ga0075365_10030497 3300006038 Bacteria 3454
31 Ga0075368_10001179 3300006042 Bacteria 8236
32 Ga0075363_100003146 3300006048 Bacteria 6940
33 Ga0075363_100012358 3300006048 Bacteria 4114
34 Ga0075364_10003718 3300006051 Bacteria 8706
35 Ga0075364_10015071 3300006051 Bacteria 4787
36 Ga0070716_100001146 3300006173 Bacteria 11682
37 Ga0070712_100021391 3300006175 Bacteria 4249
38 Ga0075362_10002092 3300006177 Bacteria 6588
39 Ga0075367_10050179 3300006178 Bacteria 2463
40 Ga0075370_10000312 3300006353 Bacteria 17559
41 Ga0068871_100120876 3300006358 Bacteria 2212
42 Ga0075428_100002659 3300006844 Bacteria 19407
43 Ga0075428_100053100 3300006844 Bacteria 4440
44 Ga0075430_100036480 3300006846 Bacteria 4168
45 Ga0075431_100041954 3300006847 Bacteria 4718
46 Ga0075434_100067225 3300006871 Bacteria 3571
47 Ga0105240_10017053 3300009093 Bacteria 9807
48 Ga0111539_10071043 3300009094 Bacteria 4108
49 Ga0105241_10035774 3300009174 Bacteria 3735
50 Ga0157373_10015511 3300013100 Bacteria 5571
51 Ga0157371_10002281 3300013102 Bacteria 18478
52 Ga0157370_10002567 3300013104 Bacteria 21795
53 Ga0157369_10051327 3300013105 Bacteria 4463
54 Ga0157372_10005379 3300013307 Bacteria 13610
55 Ga0213876_10009271 3300021384 Bacteria 5301
56 Ga0209051_1000613 3300025303 Bacteria 41149
57 Ga0207699_10000253 3300025906 Bacteria 29543
58 Ga0207645_10002456 3300025907 Bacteria 14586
59 Ga0207695_10057596 3300025913 Bacteria 4036
60 Ga0207693_10020503 3300025915 Bacteria 5258
61 Ga0207693_10074180 3300025915 Bacteria 2664
62 Ga0207663_10000913 3300025916 Bacteria 13487
63 Ga0207657_10001643 3300025919 Bacteria 24111
64 Ga0207652_10031454 3300025921 Bacteria 4457
65 Ga0207664_10008375 3300025929 Bacteria 7208
66 Ga0207644_10028745 3300025931 Bacteria 3852
67 Ga0207690_10001546 3300025932 Bacteria 14402
68 Ga0207706_10001409 3300025933 Bacteria 24052
69 Ga0207706_10002104 3300025933 Bacteria 19489
70 Ga0207665_10010007 3300025939 Bacteria 6226
71 Ga0207665_10032605 3300025939 Bacteria 3450
72 Ga0207691_10001762 3300025940 Bacteria 21305
73 Ga0207667_10003615 3300025949 Bacteria 19077
74 Ga0207668_10022506 3300025972 Bacteria 4037
75 Ga0207640_10005620 3300025981 Bacteria 6835
76 Ga0207702_10000127 3300026078 Bacteria 89755
77 Ga0207648_10000085 3300026089 Bacteria 88563
78 Ga0207648_10011695 3300026089 Bacteria 8259
79 Ga0207675_100001333 3300026118 Bacteria 24757
80 Ga0207428_10048357 3300027907 Bacteria 3413
81 Ga0268266_10002705 3300028379 Bacteria 18600
82 Ga0268265_10050715 3300028380 Bacteria 3128
83 Ga0268264_10000030 3300028381 Bacteria 418542
84 Ga0268264_10000417 3300028381 Bacteria 60164
85 Ga0265330_10034056 3300031235 Bacteria 2276
86 Ga0265332_10000042 3300031238 Bacteria 117639
87 Ga0265320_10012208 3300031240 Bacteria 5014
88 Ga0265320_10046733 3300031240 Unclassified 2120
89 Ga0265339_10003156 3300031249 Bacteria 11599
90 Ga0265331_10000022 3300031250 Bacteria 240970
91 Ga0265331_10015681 3300031250 Bacteria 3996
92 Ga0265327_10013954 3300031251 Bacteria 5294
93 Ga0265316_10000224 3300031344 Bacteria 65552
94 Ga0307509_10000019 3300031507 Bacteria 256151
95 Ga0265314_10000120 3300031711 Bacteria 121261
96 Ga0265314_10000336 3300031711 Bacteria 65870
97 Ga0265342_10004601 3300031712 Bacteria 10764
98 Ga0265342_10007434 3300031712 Bacteria 8017
99 Ga0316576_10004846 3300031727 Bacteria 8134
100 Ga0316578_10006005 3300031728 Bacteria 5951
101 Ga0316577_10007416 3300031733 Bacteria 5852
102 Ga0307507_10007677 3300033179 Bacteria 15449
103 Ga0373923_0009970 3300035111 Bacteria 3441
104 Ga0373936_0004892 3300035113 Bacteria 5050
105 Ga0373956_0005087 3300035119 Bacteria 5262
106 Ga0316574_0004339 3300035398 Bacteria 7410
107 Ga0316574_0004955 3300035398 Bacteria 7053
108 Ga0316574_0044312 3300035398 Bacteria 2752
109 Ga0373935_0021285 3300035692 Bacteria 3969
110 Ga0373927_0015122 3300035695 Bacteria 5101
111 Ga0373933_0000342 3300035724 Bacteria 29960
112 Ga0373937_0002611 3300036401 Bacteria 15014
113 Ga0373937_0004456 3300036401 Bacteria 11903
114 Ga0373937_0220119 3300036401 Bacteria 1787
115 Ga0316582_0008721 3300036647 Bacteria 5458
116 Ga0316584_0027144 3300036712 Bacteria 4212
117 Ga0373925_0045214 3300037068 Bacteria 3271
118 Ga0395905_0011672 3300037471 Bacteria 8483
119 Ga0400483_139301 3300039062 Bacteria 3255
120 Ga0436365_0167764 3300039437 Bacteria 15121
121 Ga0436363_0340993 3300039450 Bacteria 1983
122 Ga0466966_0013186 3300044684 Bacteria 5474
123 Ga0466967_0008780 3300045976 Bacteria 7447
124 Ga0466967_0076502 3300045976 Bacteria 3011
125 Ga0495651_0020573 3300046462 Bacteria 5124
126 Ga0495608_0009766 3300046511 Bacteria 6696
127 Ga0495630_0019847 3300046517 Bacteria 4947
128 Ga0495667_0003472 3300046559 Bacteria 10562
129 Ga0495667_0058922 3300046559 Unclassified 2521
130 Ga0495635_0056881 3300046663 Bacteria 2692
131 Ga0495657_0003868 3300046675 Bacteria 12064
132 Ga0495680_0021564 3300047322 Bacteria 5391
133 Ga0495680_0103598 3300047322 Bacteria 2118
134 Ga0495602_0020755 3300048088 Bacteria 6486
135 Ga0496102_0051358 3300048905 Bacteria 3756
136 Ga0496104_0023636 3300048907 Bacteria 5652
137 Ga0496106_0002119 3300048909 Bacteria 14839
138 Ga0496108_0200077 3300048911 Bacteria 1734
139 Ga0496109_0081802 3300048912 Bacteria 2976
140 Ga0496115_0020818 3300048918 Bacteria 5062
141 Ga0496117_0005455 3300048920 Bacteria 13342
142 Ga0496118_0009931 3300048921 Bacteria 9506
143 Ga0496121_0004013 3300048924 Bacteria 20280
144 Ga0496124_0001073 3300048927 Bacteria 43225
145 Ga0496126_0000035 3300048929 Bacteria 361590
146 Ga0496126_0002018 3300048929 Bacteria 28703
147 Ga0501034_0002710 3300049571 Bacteria 20871
148 Ga0501034_0064743 3300049571 Bacteria 3669
149 Ga0501036_0054028 3300049572 Bacteria 3401
150 Ga0501046_0011231 3300049580 Bacteria 7668
151 Ga0501047_0011670 3300049581 Bacteria 8307
152 Ga0501047_0017645 3300049581 Bacteria 6839
153 Ga0501047_0021813 3300049581 Bacteria 6149
154 Ga0501071_0124672 3300049587 Bacteria 1911
155 Ga0501080_0096276 3300049742 Bacteria 2748
156 Ga0501035_0002727 3300049822 Bacteria 17136
157 nmdc:mga03n38_1443_c1 3300050490 Bacteria 6808
158 nmdc:mga03n38_17498_c1 3300050490 Bacteria 2809
159 nmdc:mga00v17_21171_c1 3300050491 Bacteria 3736
160 nmdc:mga00v17_6079_c1 3300050491 Bacteria 6388
161 nmdc:mga0yw44_42978_c1 3300050492 Bacteria 2697
162 nmdc:mga04h51_748_c1 3300050495 Bacteria 7518
163 nmdc:mga07m45_1507_c1 3300050496 Bacteria 10686
164 nmdc:mga06r32_45816_c1 3300050510 Bacteria 4171
165 Ga0500566_0000046 3300053094 Bacteria 59187
166 Ga0500640_005282 3300053095 Bacteria 4796
167 Ga0500591_013573 3300053115 Bacteria 3902
168 Ga0500559_0001633 3300053136 Bacteria 12428
169 Ga0500573_0006539 3300053140 Bacteria 6319
170 Ga0500590_024720 3300053148 Bacteria 3118
171 Ga0500603_000071 3300053150 Bacteria 23487
172 Ga0500616_0000597 3300053153 Bacteria 43872
173 Ga0500616_0008680 3300053153 Bacteria 6276
174 Ga0500616_0040280 3300053153 Bacteria 2514
175 Ga0500596_002470 3300053735 Bacteria 3644
176 Ga0501082_0102052 3300060353 Bacteria 2482
177 2548694924 2547132424 Bacteria 8348532
178 8002782404 8002775197 Bacteria 10728764
179 8002792467 8002784119 Bacteria 9788632
180 Ga0265327_10003186
181 Ga0055540_1001621
182 Ga0070676_10013587
183 Ga0070680_100028043
184 Ga0070668_100044536
185 Ga0070669_100018941
186 Ga0070671_100023541
187 Ga0070659_100096961
188 Ga0070709_10000652
189 Ga0070714_100011280
190 Ga0070713_100034104
191 Ga0070711_100010281
192 Ga0070662_100000761
193 Ga0070662_100018970
194 Ga0070681_10005167
195 Ga0070707_100158201
196 Ga0070679_100011081
197 Ga0068853_100001355
198 Ga0068853_100065991
199 Ga0070665_100000078
200 Ga0070665_100000467
201 Ga0068855_100007230
202 Ga0070664_100019811
203 Ga0068856_100000505
204 Ga0068861_100064200
205 Ga0068863_100045931
206 Ga0068860_100000101
207 Ga0068860_100000334
208 Ga0081539_10010595
209 Ga0075365_10030497
210 Ga0075368_10001179
211 Ga0075363_100003146
212 Ga0075363_100012358
213 Ga0075364_10003718
214 Ga0075364_10015071
215 Ga0070716_100001146
216 Ga0070712_100021391
217 Ga0075362_10002092
218 Ga0075367_10050179
219 Ga0075370_10000312
220 Ga0068871_100120876
221 Ga0075428_100002659
222 Ga0075428_100053100
223 Ga0075430_100036480
224 Ga0075431_100041954
225 Ga0075434_100067225
226 Ga0105240_10017053
227 Ga0111539_10071043
228 Ga0105241_10035774
229 Ga0157373_10015511
230 Ga0157371_10002281
231 Ga0157370_10002567
232 Ga0157369_10051327
233 Ga0157372_10005379
234 Ga0213876_10009271
235 Ga0209051_1000613
236 Ga0207699_10000253
237 Ga0207645_10002456
238 Ga0207695_10057596
239 Ga0207693_10020503
240 Ga0207693_10074180
241 Ga0207663_10000913
242 Ga0207657_10001643
243 Ga0207652_10031454
244 Ga0207664_10008375
245 Ga0207644_10028745
246 Ga0207690_10001546
247 Ga0207706_10001409
248 Ga0207706_10002104
249 Ga0207665_10010007
250 Ga0207665_10032605
251 Ga0207691_10001762
252 Ga0207667_10003615
253 Ga0207668_10022506
254 Ga0207640_10005620
255 Ga0207702_10000127
256 Ga0207648_10000085
257 Ga0207648_10011695
258 Ga0207675_100001333
259 Ga0207428_10048357
260 Ga0268266_10002705
261 Ga0268265_10050715
262 Ga0268264_10000030
263 Ga0268264_10000417
264 Ga0265330_10034056
265 Ga0265332_10000042
266 Ga0265320_10012208
267 Ga0265320_10046733
268 Ga0265339_10003156
269 Ga0265331_10000022
270 Ga0265331_10015681
271 Ga0265327_10013954
272 Ga0265316_10000224
273 Ga0307509_10000019
274 Ga0265314_10000120
275 Ga0265314_10000336
276 Ga0265342_10004601
277 Ga0265342_10007434
278 Ga0316576_10004846
279 Ga0316578_10006005
280 Ga0316577_10007416
281 Ga0307507_10007677
282 Ga0373923_0009970
283 Ga0373936_0004892
284 Ga0373956_0005087
285 Ga0316574_0004339
286 Ga0316574_0004955
287 Ga0316574_0044312
288 Ga0373935_0021285
289 Ga0373927_0015122
290 Ga0373933_0000342
291 Ga0373937_0002611
292 Ga0373937_0004456
293 Ga0373937_0220119
294 Ga0316582_0008721
295 Ga0316584_0027144
296 Ga0373925_0045214
297 Ga0395905_0011672
298 Ga0400483_139301
299 Ga0436365_0167764
300 Ga0436363_0340993
301 Ga0466966_0013186
302 Ga0466967_0008780
303 Ga0466967_0076502
304 Ga0495651_0020573
305 Ga0495608_0009766
306 Ga0495630_0019847
307 Ga0495667_0003472
308 Ga0495667_0058922
309 Ga0495635_0056881
310 Ga0495657_0003868
311 Ga0495680_0021564
312 Ga0495680_0103598
313 Ga0495602_0020755
314 Ga0496102_0051358
315 Ga0496104_0023636
316 Ga0496106_0002119
317 Ga0496108_0200077
318 Ga0496109_0081802
319 Ga0496115_0020818
320 Ga0496117_0005455
321 Ga0496118_0009931
322 Ga0496121_0004013
323 Ga0496124_0001073
324 Ga0496126_0000035
325 Ga0496126_0002018
326 Ga0501034_0002710
327 Ga0501034_0064743
328 Ga0501036_0054028
329 Ga0501046_0011231
330 Ga0501047_0011670
331 Ga0501047_0017645
332 Ga0501047_0021813
333 Ga0501071_0124672
334 Ga0501080_0096276
335 Ga0501035_0002727
336 nmdc:mga03n38_1443_c1
337 nmdc:mga03n38_17498_c1
338 nmdc:mga00v17_21171_c1
339 nmdc:mga00v17_6079_c1
340 nmdc:mga0yw44_42978_c1
341 nmdc:mga04h51_748_c1
342 nmdc:mga07m45_1507_c1
343 nmdc:mga06r32_45816_c1
344 Ga0500566_0000046
345 Ga0500640_005282
346 Ga0500591_013573
347 Ga0500559_0001633
348 Ga0500573_0006539
349 Ga0500590_024720
350 Ga0500603_000071
351 Ga0500616_0000597
352 Ga0500616_0008680
353 Ga0500616_0040280
354 Ga0500596_002470
355 Ga0501082_0102052
356 2548694924
357 8002782404
358 8002792467

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

174

241

0.96

PF00743

FMO-like

Flavin-binding monooxygenase-like

169

381

0.86

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

173

398

0.83

PF13434

Lys_Orn_oxgnase

L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

235

383

0.79

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

170

394

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
1f8g-assembly1.cif.gz_A the x-ray structure of nicotinamide nucleotide transhydrogenase from rhodospirillum rubrum complexed with nad+ 0.9548 142 174
7wnw-assembly1.cif.gz_B crystal structure of imine reductase mutant(m5) from actinoalloteichus hymeniacidonis in complex with nadph 0.9143 142 174
6jiz-assembly1.cif.gz_A apo structure of an imine reductase at 1.76 angstrom resolution 0.9132 141 173
7wnn-assembly1.cif.gz_A crystal structure of imine reductase from actinoalloteichus hymeniacidonis in complex with nadph 0.9123 142 174
6toe-assembly2.cif.gz_F imine reductase from myxococcus stipitatus v8 variant in complex with nad+ 0.9097 141 171
ID Description Score Start End Superfamily
af_A0A1D6JIA9_976_1140_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9802 144 174 3.40.50.720
af_Q2FZH1_2_136_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9668 142 173 3.40.50.720
af_Q5AHE0_44_199_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9492 142 288 3.50.50.60
af_P71662_1_248_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9485 140 378 3.50.50.60
3enkB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9417 143 172 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A6J6HSR4-F1-model_v4 Unannotated protein 0.9925 502 642
AF-A0A7Y5XL93-F1-model_v4 deleted 0.9901 185 642
AF-A0A7Y5XL93-F1-model_v4 deleted 0.9879 185 642
AF-A0A6J6HSR4-F1-model_v4 Unannotated protein 0.9856 502 642
AF-A0A1V3X2N5-F1-model_v4 Putative 4-hydroxyacetophenone monooxygenase domain protein 0.9814 413 641 GO:0004497

Map