F275662

General Info

Members Datasets Scaffolds Average Seq Length
180 110 360 285

Family's Representative Sequence

Representative Sequence 3300021377|Ga0213874_10008609|Ga0213874_100086092
Length 314
Sequence VSEMDNATVRDPAAGSKASCEPLNEFLARLVKTIDVALNEWVPGESAGPSSIHQAMRYSLFAGGKRIRPVLAIAAGGAIADSPRGVEHAAATLELVHTYSLIHDDLPALDNDDLRRGRPTCHRVFGEAMAILAGDALLTLAFEVLSRLPDIAAERKIRLVEELSRAAGTVGGMIGGQVNDLAGERQQPTAALLDSIHRAKTGALLRASVRMGGIYAGATARELAALSSYGEHIGLAFQIIDDVLDIEESSEVLGKTAGKDEAQQKITFPAVYGLERSRQMAEQERVAAHSSLSIFGVRAERLRQIADFIVQRKA

Samples

Sample ID Description Type Environment
1 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
43 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
44 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
67 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
68 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
69 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
70 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
71 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
72 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
73 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
74 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
75 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
76 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
77 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
79 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
82 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
83 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
84 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
88 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
89 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
90 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
91 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
92 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
93 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
94 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
104 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
109 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
110 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.44
Metatranscriptomes 0.56
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.56
Nodule 0
Rhizoplane 1.11
Rhizosphere 83.89
Stem 0
Stem Tuber 0
Unclassified 4.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0213874_10008609 3300021377 Bacteria 2493
2 Ga0070683_100016974 3300005329 Bacteria 6425
3 Ga0070661_100029091 3300005344 Bacteria 3986
4 Ga0070661_100079546 3300005344 Bacteria 2419
5 Ga0070659_100266858 3300005366 Bacteria 1421
6 Ga0070709_10168214 3300005434 Bacteria 1530
7 Ga0070713_100001131 3300005436 Bacteria 17053
8 Ga0070713_100001568 3300005436 Bacteria 14625
9 Ga0070711_100023250 3300005439 Bacteria 4028
10 Ga0070711_100133298 3300005439 Bacteria 1853
11 Ga0070705_100060062 3300005440 Bacteria 2253
12 Ga0070694_100180237 3300005444 Unclassified 1562
13 Ga0070708_100042828 3300005445 Bacteria 3976
14 Ga0070678_100153398 3300005456 Bacteria 1858
15 Ga0070699_100017735 3300005518 Bacteria 6113
16 Ga0070665_100000055 3300005548 Bacteria 242706
17 Ga0070665_100180617 3300005548 Bacteria 2111
18 Ga0070665_100364080 3300005548 Bacteria 1452
19 Ga0070665_100450023 3300005548 Unclassified 1297
20 Ga0068855_100028089 3300005563 Bacteria 6729
21 Ga0068855_100170476 3300005563 Bacteria 2465
22 Ga0070664_100152134 3300005564 Bacteria 2043
23 Ga0068856_100026352 3300005614 Bacteria 5669
24 Ga0068856_100110951 3300005614 Bacteria 2740
25 Ga0068856_100200833 3300005614 Unclassified 2008
26 Ga0068856_100214988 3300005614 Bacteria 1938
27 Ga0068856_100258041 3300005614 Unclassified 1758
28 Ga0068856_100434063 3300005614 Bacteria 1334
29 Ga0068859_100262575 3300005617 Bacteria 1818
30 Ga0068863_100007344 3300005841 Bacteria 10787
31 Ga0068858_100066354 3300005842 Bacteria 3341
32 Ga0081455_10006591 3300005937 Bacteria 12420
33 Ga0070717_10036729 3300006028 Bacteria 3976
34 Ga0070717_10062012 3300006028 Bacteria 3100
35 Ga0097621_100126998 3300006237 Bacteria 2167
36 Ga0075436_100013259 3300006914 Bacteria 5648
37 Ga0097620_100262594 3300006931 Bacteria 1818
38 Ga0105240_10006816 3300009093 Bacteria 16707
39 Ga0105240_10015046 3300009093 Bacteria 10532
40 Ga0105240_10029245 3300009093 Bacteria 7184
41 Ga0105240_10138027 3300009093 Bacteria 2918
42 Ga0105245_10011279 3300009098 Bacteria 7783
43 Ga0105245_10063642 3300009098 Bacteria 3331
44 Ga0105245_10331161 3300009098 Bacteria 1503
45 Ga0105248_10005475 3300009177 Bacteria 13950
46 Ga0105248_10267409 3300009177 Bacteria 1925
47 Ga0105248_10273683 3300009177 Bacteria 1901
48 Ga0105237_10049143 3300009545 Bacteria 4241
49 Ga0105249_10015199 3300009553 Bacteria 6811
50 Ga0105239_10746229 3300010375 Bacteria 1120
51 Ga0157370_10019850 3300013104 Bacteria 6726
52 Ga0157370_10026625 3300013104 Bacteria 5707
53 Ga0157370_10209188 3300013104 Bacteria 1808
54 Ga0157369_10003559 3300013105 Bacteria 18509
55 Ga0157369_10004605 3300013105 Bacteria 16206
56 Ga0157369_10112087 3300013105 Bacteria 2899
57 Ga0157374_10004735 3300013296 Bacteria 11406
58 Ga0157374_10005880 3300013296 Bacteria 10363
59 Ga0157378_10027451 3300013297 Bacteria 5024
60 Ga0163162_10039805 3300013306 Bacteria 4697
61 Ga0157372_10269149 3300013307 Bacteria 1979
62 Ga0157372_10564472 3300013307 Bacteria 1327
63 Ga0157375_10001597 3300013308 Bacteria 19470
64 Ga0163163_10223000 3300014325 Bacteria 1934
65 Ga0206350_10491317 3300020080 Unclassified 1418
66 Ga0213872_10068217 3300021361 Bacteria 1605
67 Ga0213876_10001101 3300021384 Bacteria 17298
68 Ga0213876_10004425 3300021384 Bacteria 7881
69 Ga0213875_10000112 3300021388 Bacteria 91961
70 Ga0213875_10028137 3300021388 Bacteria 2672
71 Ga0213875_10038635 3300021388 Bacteria 2249
72 Ga0213875_10142226 3300021388 Bacteria 1123
73 Ga0213871_10005107 3300021441 Bacteria 2682
74 Ga0207699_10060627 3300025906 Bacteria 2273
75 Ga0207705_10043631 3300025909 Bacteria 3222
76 Ga0207707_10127782 3300025912 Bacteria 2223
77 Ga0207695_10003183 3300025913 Bacteria 23387
78 Ga0207695_10017702 3300025913 Bacteria 8277
79 Ga0207695_10054754 3300025913 Bacteria 4163
80 Ga0207663_10018753 3300025916 Bacteria 3885
81 Ga0207657_10000194 3300025919 Bacteria 63233
82 Ga0207649_10034459 3300025920 Bacteria 3034
83 Ga0207649_10054765 3300025920 Bacteria 2484
84 Ga0207649_10175660 3300025920 Bacteria 1495
85 Ga0207652_10095992 3300025921 Bacteria 2612
86 Ga0207694_10004398 3300025924 Bacteria 11006
87 Ga0207694_10037321 3300025924 Bacteria 3732
88 Ga0207694_10047017 3300025924 Bacteria 3337
89 Ga0207687_10016482 3300025927 Bacteria 4854
90 Ga0207687_10071847 3300025927 Unclassified 2473
91 Ga0207687_10415901 3300025927 Bacteria 1109
92 Ga0207700_10003173 3300025928 Bacteria 9491
93 Ga0207700_10026687 3300025928 Bacteria 4032
94 Ga0207664_10013332 3300025929 Bacteria 5896
95 Ga0207664_10269361 3300025929 Bacteria 1491
96 Ga0207690_10043947 3300025932 Bacteria 2943
97 Ga0207665_10237604 3300025939 Bacteria 1341
98 Ga0207711_10006479 3300025941 Bacteria 9854
99 Ga0207711_10018431 3300025941 Bacteria 5803
100 Ga0207711_10198139 3300025941 Bacteria 1832
101 Ga0207667_10005550 3300025949 Bacteria 15393
102 Ga0207712_10011104 3300025961 Bacteria 5733
103 Ga0207703_10061083 3300026035 Bacteria 3084
104 Ga0207703_10366385 3300026035 Bacteria 1330
105 Ga0207702_10024277 3300026078 Bacteria 5030
106 Ga0207702_10085372 3300026078 Bacteria 2751
107 Ga0207702_10190849 3300026078 Bacteria 1893
108 Ga0207702_10364751 3300026078 Unclassified 1385
109 Ga0207702_10378455 3300026078 Bacteria 1361
110 Ga0207641_10008964 3300026088 Bacteria 8264
111 Ga0207698_10119842 3300026142 Bacteria 2225
112 Ga0268266_10000027 3300028379 Bacteria 426852
113 Ga0307511_10000703 3300030521 Bacteria 35667
114 Ga0265325_10022595 3300031241 Bacteria 3443
115 Ga0373945_0016573 3300035116 Bacteria 2487
116 Ga0373954_0025135 3300035118 Bacteria 2721
117 Ga0373956_0098017 3300035119 Bacteria 1357
118 Ga0373943_0015519 3300035170 Bacteria 3462
119 Ga0373946_0099128 3300035171 Bacteria 1304
120 Ga0373935_0306324 3300035692 Bacteria 1124
121 Ga0373927_0001611 3300035695 Bacteria 16948
122 Ga0373927_0246602 3300035695 Bacteria 1174
123 Ga0373947_0000917 3300035725 Bacteria 17895
124 Ga0373937_0051700 3300036401 Bacteria 3766
125 Ga0373925_0004531 3300037068 Bacteria 10496
126 Ga0373925_0198378 3300037068 Bacteria 1595
127 Ga0395900_0182929 3300037418 Bacteria 2129
128 Ga0395900_0236142 3300037418 Unclassified 1836
129 Ga0436364_0047282 3300037853 Bacteria 5264
130 Ga0436364_0059535 3300037853 Bacteria 4282
131 Ga0436364_0149732 3300037853 Bacteria 1906
132 Ga0436364_0197022 3300037853 Bacteria 80312
133 Ga0436364_0324083 3300037853 Bacteria 1832
134 Ga0436364_0335822 3300037853 Bacteria 1507
135 Ga0436364_0353508 3300037853 Bacteria 6464
136 Ga0436364_0749502 3300037853 Bacteria 105484
137 Ga0436364_0940248 3300037853 Bacteria 592364
138 Ga0436364_1135269 3300037853 Bacteria 21600
139 Ga0436364_1338898 3300037853 Bacteria 44672
140 Ga0436365_0037632 3300039437 Bacteria 1528
141 Ga0436365_1080489 3300039437 Bacteria 5042
142 Ga0436365_1345064 3300039437 Bacteria 8764
143 Ga0436365_1603701 3300039437 Bacteria 9238
144 Ga0436365_1740034 3300039437 Bacteria 1250
145 Ga0436360_0918724 3300039438 Bacteria 8558
146 Ga0436363_0077942 3300039450 Bacteria 6274
147 Ga0436363_1147485 3300039450 Bacteria 7031
148 Ga0436362_0576068 3300039453 Bacteria 1967
149 Ga0436362_0780056 3300039453 Bacteria 2555
150 Ga0451577_0323405 3300042876 Bacteria 1399
151 Ga0466963_0043633 3300044694 Bacteria 2950
152 Ga0451576_0055885 3300045051 Bacteria 4129
153 Ga0451576_0386922 3300045051 Bacteria 1466
154 Ga0495580_0005528 3300046472 Bacteria 10433
155 Ga0495662_0163421 3300046476 Bacteria 1097
156 Ga0495594_0125979 3300046499 Bacteria 1449
157 Ga0495652_0022360 3300046529 Bacteria 5610
158 Ga0495665_0049930 3300046531 Bacteria 2218
159 Ga0495684_0245542 3300047471 Bacteria 1304
160 Ga0496114_0320674 3300048917 Bacteria 1369
161 Ga0496115_0023956 3300048918 Bacteria 4741
162 Ga0501034_0110261 3300049571 Bacteria 2743
163 Ga0501036_0289325 3300049572 Bacteria 1371
164 Ga0501037_0033881 3300049573 Bacteria 3771
165 Ga0501038_0040201 3300049574 Bacteria 4087
166 Ga0501043_0020949 3300049579 Bacteria 5127
167 Ga0501046_0251018 3300049580 Bacteria 1302
168 Ga0501047_0050950 3300049581 Bacteria 3998
169 Ga0501070_0014020 3300049586 Bacteria 6747
170 Ga0501073_0095135 3300049589 Bacteria 2069
171 Ga0501074_0102670 3300049590 Bacteria 2047
172 Ga0501080_0201816 3300049742 Bacteria 1826
173 Ga0501035_0018931 3300049822 Bacteria 6342
174 Ga0501035_0447165 3300049822 Bacteria 1069
175 Ga0501044_0003939 3300049823 Bacteria 16637
176 Ga0501044_0049770 3300049823 Bacteria 4326
177 Ga0501044_0112003 3300049823 Bacteria 2736
178 nmdc:mga0rr50_204435_c1 3300050513 Bacteria 1624
179 nmdc:mga08x19_1068_c1 3300050514 Bacteria 17092
180 Ga0500568_0001593 3300053139 Bacteria 14352
181 Ga0213874_10008609
182 Ga0070683_100016974
183 Ga0070661_100029091
184 Ga0070661_100079546
185 Ga0070659_100266858
186 Ga0070709_10168214
187 Ga0070713_100001131
188 Ga0070713_100001568
189 Ga0070711_100023250
190 Ga0070711_100133298
191 Ga0070705_100060062
192 Ga0070694_100180237
193 Ga0070708_100042828
194 Ga0070678_100153398
195 Ga0070699_100017735
196 Ga0070665_100000055
197 Ga0070665_100180617
198 Ga0070665_100364080
199 Ga0070665_100450023
200 Ga0068855_100028089
201 Ga0068855_100170476
202 Ga0070664_100152134
203 Ga0068856_100026352
204 Ga0068856_100110951
205 Ga0068856_100200833
206 Ga0068856_100214988
207 Ga0068856_100258041
208 Ga0068856_100434063
209 Ga0068859_100262575
210 Ga0068863_100007344
211 Ga0068858_100066354
212 Ga0081455_10006591
213 Ga0070717_10036729
214 Ga0070717_10062012
215 Ga0097621_100126998
216 Ga0075436_100013259
217 Ga0097620_100262594
218 Ga0105240_10006816
219 Ga0105240_10015046
220 Ga0105240_10029245
221 Ga0105240_10138027
222 Ga0105245_10011279
223 Ga0105245_10063642
224 Ga0105245_10331161
225 Ga0105248_10005475
226 Ga0105248_10267409
227 Ga0105248_10273683
228 Ga0105237_10049143
229 Ga0105249_10015199
230 Ga0105239_10746229
231 Ga0157370_10019850
232 Ga0157370_10026625
233 Ga0157370_10209188
234 Ga0157369_10003559
235 Ga0157369_10004605
236 Ga0157369_10112087
237 Ga0157374_10004735
238 Ga0157374_10005880
239 Ga0157378_10027451
240 Ga0163162_10039805
241 Ga0157372_10269149
242 Ga0157372_10564472
243 Ga0157375_10001597
244 Ga0163163_10223000
245 Ga0206350_10491317
246 Ga0213872_10068217
247 Ga0213876_10001101
248 Ga0213876_10004425
249 Ga0213875_10000112
250 Ga0213875_10028137
251 Ga0213875_10038635
252 Ga0213875_10142226
253 Ga0213871_10005107
254 Ga0207699_10060627
255 Ga0207705_10043631
256 Ga0207707_10127782
257 Ga0207695_10003183
258 Ga0207695_10017702
259 Ga0207695_10054754
260 Ga0207663_10018753
261 Ga0207657_10000194
262 Ga0207649_10034459
263 Ga0207649_10054765
264 Ga0207649_10175660
265 Ga0207652_10095992
266 Ga0207694_10004398
267 Ga0207694_10037321
268 Ga0207694_10047017
269 Ga0207687_10016482
270 Ga0207687_10071847
271 Ga0207687_10415901
272 Ga0207700_10003173
273 Ga0207700_10026687
274 Ga0207664_10013332
275 Ga0207664_10269361
276 Ga0207690_10043947
277 Ga0207665_10237604
278 Ga0207711_10006479
279 Ga0207711_10018431
280 Ga0207711_10198139
281 Ga0207667_10005550
282 Ga0207712_10011104
283 Ga0207703_10061083
284 Ga0207703_10366385
285 Ga0207702_10024277
286 Ga0207702_10085372
287 Ga0207702_10190849
288 Ga0207702_10364751
289 Ga0207702_10378455
290 Ga0207641_10008964
291 Ga0207698_10119842
292 Ga0268266_10000027
293 Ga0307511_10000703
294 Ga0265325_10022595
295 Ga0373945_0016573
296 Ga0373954_0025135
297 Ga0373956_0098017
298 Ga0373943_0015519
299 Ga0373946_0099128
300 Ga0373935_0306324
301 Ga0373927_0001611
302 Ga0373927_0246602
303 Ga0373947_0000917
304 Ga0373937_0051700
305 Ga0373925_0004531
306 Ga0373925_0198378
307 Ga0395900_0182929
308 Ga0395900_0236142
309 Ga0436364_0047282
310 Ga0436364_0059535
311 Ga0436364_0149732
312 Ga0436364_0197022
313 Ga0436364_0324083
314 Ga0436364_0335822
315 Ga0436364_0353508
316 Ga0436364_0749502
317 Ga0436364_0940248
318 Ga0436364_1135269
319 Ga0436364_1338898
320 Ga0436365_0037632
321 Ga0436365_1080489
322 Ga0436365_1345064
323 Ga0436365_1603701
324 Ga0436365_1740034
325 Ga0436360_0918724
326 Ga0436363_0077942
327 Ga0436363_1147485
328 Ga0436362_0576068
329 Ga0436362_0780056
330 Ga0451577_0323405
331 Ga0466963_0043633
332 Ga0451576_0055885
333 Ga0451576_0386922
334 Ga0495580_0005528
335 Ga0495662_0163421
336 Ga0495594_0125979
337 Ga0495652_0022360
338 Ga0495665_0049930
339 Ga0495684_0245542
340 Ga0496114_0320674
341 Ga0496115_0023956
342 Ga0501034_0110261
343 Ga0501036_0289325
344 Ga0501037_0033881
345 Ga0501038_0040201
346 Ga0501043_0020949
347 Ga0501046_0251018
348 Ga0501047_0050950
349 Ga0501070_0014020
350 Ga0501073_0095135
351 Ga0501074_0102670
352 Ga0501080_0201816
353 Ga0501035_0018931
354 Ga0501035_0447165
355 Ga0501044_0003939
356 Ga0501044_0049770
357 Ga0501044_0112003
358 nmdc:mga0rr50_204435_c1
359 nmdc:mga08x19_1068_c1
360 Ga0500568_0001593

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

49

293

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3krf-assembly1.cif.gz_D mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium, ipp, and dmaspp (i) 0.8781 1 277
3krf-assembly1.cif.gz_D mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium, ipp, and dmaspp (i) 0.8751 1 277
5e8h-assembly1.cif.gz_A crystal structure of geranylfarnesyl pyrophosphate synthases 2 from arabidopsis thaliana 0.8599 3 273
4llt-assembly1.cif.gz_B crystal structure of a farnesyl diphosphate synthase from roseobacter denitrificans och 114, target efi-509393, with two ipp and calcium bound in active site 0.8547 3 277
3krp-assembly3.cif.gz_D mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium and gpp 0.8498 1 277
ID Description Score Start End Superfamily
af_A0A0P0V0B7_118_416_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8696 1 277 1.10.600.10
af_A0A0P0V0B7_118_416_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8666 1 277 1.10.600.10
2j1oA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8481 5 275 1.10.600.10
3ucaB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8373 1 277 1.10.600.10
2j1oA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8357 5 275 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A0F9HZD1-F1-model_v4 Polyprenyl synthetase 0.9187 159 277 GO:0004659
GO:0008299
AF-A0A2N2FEI9-F1-model_v4 Polyprenyl synthetase 0.9151 3 277 GO:0004659
GO:0008299
AF-A0A6L7UDA6-F1-model_v4 deleted 0.9117 1 277
AF-A0A6T5Y0D7-F1-model_v4 Geranylgeranyl diphosphate synthase 0.9096 3 277 GO:0004659
GO:0005737
GO:0008299
AF-A0A6L7UDA6-F1-model_v4 deleted 0.9086 1 277

Map