F263611

General Info

Members Datasets Scaffolds Average Seq Length
173 66 346 287

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8002317523|8002320681
Length 322
Sequence TASNSASSSASGEAKPTGELARPAPATRPRRLKRTPGEVVFDTLVYSALIVFTFICLFPFLNTLANAFSSSTAIQTGKVLLWPVEFQVGSMKMILADSSVIRSLLVTVFLTVVGTTLNLLFTIITAYPLSRRDLKGRGIFMRFMVITMLFSGGMIPLFLVVKSLHLLNTLWALIIPGLISAFNVIIMKSFFQTIPDELREASVMDGCGNMRYLIRIVLPLSGASLATIGLFYAVGHWNAYFGAVLYIDNPDLLTLQAKLRNILLLSQMDTSLEQMTMESKFTVIQESLKAAVIVVATVPILIVYPFLQKYFVKGSMLGSVKG

Samples

Sample ID Description Type Environment
1 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
2 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
3 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
4 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
5 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
6 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
7 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
8 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
9 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
10 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
11 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
12 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
13 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
14 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
15 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
16 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
17 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
18 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
19 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
20 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
21 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
22 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
23 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
24 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
25 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
26 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
27 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
28 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
29 2671180694 Paenibacillus sp. A3 Isolate Unclassified
30 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
31 2738541295 Bacillus sp. OK085 Isolate Unclassified
32 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
33 2818991459 Paenibacillus sp. 597 Isolate Unclassified
34 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
35 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
36 2857472729 Cohnella sp. R-74144 Isolate Unclassified
37 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
38 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
39 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
40 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
41 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
42 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
43 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
44 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
45 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
46 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
47 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
48 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
49 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
50 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
51 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
52 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
53 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
54 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
55 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
56 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
57 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
58 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
59 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
60 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
61 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
62 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
63 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
64 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
65 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
66 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 32.37
Metatranscriptomes 0
Isolates 67.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.83
Nodule 2.89
Rhizoplane 0
Rhizosphere 31.21
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055541_1001150 3300003841 Bacteria 5927
2 Ga0055541_1001731 3300003841 Bacteria 4595
3 Ga0055541_1007582 3300003841 Bacteria 1774
4 Ga0105251_10131715 3300009011 Bacteria 1133
5 Ga0105244_10125812 3300009036 Bacteria 1239
6 Ga0105246_10000936 3300011119 Bacteria 16719
7 Ga0209566_100024 3300025225 Bacteria 396318
8 Ga0209566_100041 3300025225 Bacteria 289634
9 Ga0209566_100067 3300025225 Bacteria 180297
10 Ga0209566_100434 3300025225 Bacteria 31279
11 Ga0209566_100565 3300025225 Bacteria 24271
12 Ga0209566_104585 3300025225 Bacteria 1861
13 Ga0209147_108467 3300025229 Bacteria 1275
14 Ga0209147_108954 3300025229 Bacteria 1213
15 Ga0209437_100347 3300025233 Bacteria 54366
16 Ga0209437_100644 3300025233 Bacteria 20406
17 Ga0209675_1008745 3300025291 Bacteria 3670
18 Ga0209675_1016422 3300025291 Bacteria 2156
19 Ga0209025_1013644 3300025294 Bacteria 5083
20 Ga0209025_1026368 3300025294 Bacteria 2921
21 Ga0395899_0023577 3300037312 Bacteria 4658
22 Ga0395899_0030951 3300037312 Bacteria 4024
23 Ga0395899_0097822 3300037312 Bacteria 2121
24 Ga0395899_0123543 3300037312 Bacteria 1852
25 Ga0395899_0135931 3300037312 Bacteria 1752
26 Ga0395899_0187378 3300037312 Bacteria 1449
27 Ga0495661_0101967 3300046665 Bacteria 1614
28 Ga0496116_0003430 3300048919 Bacteria 15665
29 Ga0496116_0013900 3300048919 Bacteria 6453
30 Ga0496116_0055941 3300048919 Bacteria 2589
31 Ga0496116_0082026 3300048919 Bacteria 1996
32 Ga0496116_0135190 3300048919 Bacteria 1398
33 Ga0496116_0147602 3300048919 Bacteria 1312
34 Ga0496116_0156465 3300048919 Bacteria 1257
35 Ga0496116_0167631 3300048919 Bacteria 1195
36 Ga0496116_0290620 3300048919 Bacteria 785
37 Ga0496121_0071689 3300048924 Bacteria 2785
38 Ga0496121_0158919 3300048924 Bacteria 1655
39 Ga0496121_0280507 3300048924 Bacteria 1140
40 Ga0496122_0000035 3300048925 Bacteria 318098
41 Ga0496122_0002406 3300048925 Bacteria 26657
42 Ga0496122_0029762 3300048925 Bacteria 4594
43 Ga0496122_0036960 3300048925 Bacteria 3940
44 Ga0496122_0062259 3300048925 Bacteria 2732
45 Ga0496122_0076501 3300048925 Bacteria 2355
46 Ga0496122_0114146 3300048925 Bacteria 1763
47 Ga0496122_0220467 3300048925 Bacteria 1089
48 Ga0496123_0016494 3300048926 Bacteria 5995
49 Ga0496123_0101689 3300048926 Bacteria 1670
50 Ga0496124_0003181 3300048927 Bacteria 20284
51 Ga0496125_0004574 3300048928 Bacteria 15845
52 Ga0496125_0027757 3300048928 Bacteria 5124
53 Ga0496125_0075629 3300048928 Bacteria 2605
54 Ga0496125_0144677 3300048928 Bacteria 1646
55 Ga0496126_0000429 3300048929 Bacteria 84720
56 Ga0496126_0000848 3300048929 Bacteria 54060
57 8002320681 8002317523 Bacteria 8051857
58 2512730677 2512564039 Bacteria 8739048
59 2512733646 2512564039 Bacteria 8739048
60 2524188284 2524023129 Bacteria 6762600
61 2550900240 2548877040 Bacteria 7507281
62 2563926244 2563366752 Bacteria 4961801
63 2571531849 2571042143 Bacteria 6986194
64 2587741463 2585428059 Bacteria 8696589
65 2595315236 2593339198 Bacteria 7267884
66 2595318130 2593339198 Bacteria 7267884
67 2595319000 2593339198 Bacteria 7267884
68 2595319829 2593339198 Bacteria 7267884
69 2595320553 2593339198 Bacteria 7267884
70 2643739386 2643221543 Bacteria 6628015
71 2644424103 2643221676 Bacteria 8119172
72 2644425236 2643221676 Bacteria 8119172
73 2644426400 2643221676 Bacteria 8119172
74 2644427090 2643221676 Bacteria 8119172
75 2644427640 2643221676 Bacteria 8119172
76 2673823252 2671180694 Bacteria 7506943
77 2728529465 2728368933 Bacteria 7044283
78 2738815169 2738541295 Bacteria 5730091
79 2793183497 2791355222 Bacteria 5898266
80 2819672655 2818991459 Bacteria 8736032
81 2819673938 2818991459 Bacteria 8736032
82 2819674625 2818991459 Bacteria 8736032
83 2821112573 2821111986 Bacteria 6894338
84 2821113009 2821111986 Bacteria 6894338
85 2821116096 2821111986 Bacteria 6894338
86 2857454239 2857453340 Bacteria 8090534
87 2857455019 2857453340 Bacteria 8090534
88 2857456046 2857453340 Bacteria 8090534
89 2857457294 2857453340 Bacteria 8090534
90 2857459240 2857453340 Bacteria 8090534
91 2857460258 2857453340 Bacteria 8090534
92 2857478256 2857472729 Bacteria 6568124
93 2864735962 2864733723 Bacteria 6770668
94 2885530625 2885526491 Bacteria 7164189
95 2888580158 2888578766 Bacteria 6743310
96 2889044124 2889042446 Bacteria 7618936
97 2889045468 2889042446 Bacteria 7618936
98 2889053279 2889049205 Bacteria 7524325
99 2889054676 2889049205 Bacteria 7524325
100 2904118880 2904113452 Bacteria 7796941
101 2904166185 2904162308 Bacteria 7086713
102 2904491012 2904490793 Bacteria 7046938
103 2904492339 2904490793 Bacteria 7046938
104 2904757834 2904755435 Bacteria 7986759
105 2904757872 2904755435 Bacteria 7986759
106 2904758588 2904755435 Bacteria 7986759
107 2904760484 2904755435 Bacteria 7986759
108 2904761243 2904755435 Bacteria 7986759
109 2904761359 2904755435 Bacteria 7986759
110 2907204233 2907202186 Bacteria 6632024
111 2919160263 2919160200 Bacteria 6929020
112 2919161563 2919160200 Bacteria 6929020
113 2919426298 2919425241 Bacteria 8055701
114 2919428411 2919425241 Bacteria 8055701
115 2919429012 2919425241 Bacteria 8055701
116 2919431130 2919425241 Bacteria 8055701
117 2925328784 2925326138 Bacteria 9652120
118 2925333207 2925326138 Bacteria 9652120
119 2925334157 2925326138 Bacteria 9652120
120 2929209941 2929206907 Bacteria 5918291
121 2931387563 2931384279 Bacteria 7299545
122 2931388899 2931384279 Bacteria 7299545
123 2938652919 2938649242 Bacteria 7118381
124 2938653636 2938649242 Bacteria 7118381
125 2939682911 2939679117 Bacteria 6921672
126 2939707653 2939702853 Bacteria 5139229
127 2945992532 2945991243 Bacteria 7008369
128 2946055277 2946053406 Bacteria 6978655
129 2946056592 2946053406 Bacteria 6978655
130 2968558940 2968558590 Bacteria 6956864
131 2968564347 2968558590 Bacteria 6956864
132 2971413715 2971410472 Bacteria 8311090
133 2971413754 2971410472 Bacteria 8311090
134 2971414511 2971410472 Bacteria 8311090
135 2971415571 2971410472 Bacteria 8311090
136 2971415681 2971410472 Bacteria 8311090
137 2971416142 2971410472 Bacteria 8311090
138 2971417516 2971410472 Bacteria 8311090
139 2980182417 2980182181 Bacteria 9454109
140 2980184126 2980182181 Bacteria 9454109
141 2980185064 2980182181 Bacteria 9454109
142 2980185141 2980182181 Bacteria 9454109
143 2980185530 2980182181 Bacteria 9454109
144 2980185606 2980182181 Bacteria 9454109
145 2980186165 2980182181 Bacteria 9454109
146 2980186640 2980182181 Bacteria 9454109
147 2980187208 2980182181 Bacteria 9454109
148 2980187437 2980182181 Bacteria 9454109
149 2980187893 2980182181 Bacteria 9454109
150 2980188131 2980182181 Bacteria 9454109
151 2980188444 2980182181 Bacteria 9454109
152 2988227039 2988225383 Bacteria 7221625
153 2988228436 2988225383 Bacteria 7221625
154 2996633091 2996632988 Bacteria 6921523
155 2996636088 2996632988 Bacteria 6921523
156 8002318656 8002317523 Bacteria 8051857
157 8002318796 8002317523 Bacteria 8051857
158 8046993488 8046991243 Bacteria 8497463
159 8046998215 8046991243 Bacteria 8497463
160 8054466282 8054465665 Bacteria 7323556
161 8054797574 8054795415 Bacteria 9785225
162 8054798389 8054795415 Bacteria 9785225
163 8054799721 8054795415 Bacteria 9785225
164 8054801096 8054795415 Bacteria 9785225
165 8054803746 8054795415 Bacteria 9785225
166 8056533518 8056533031 Bacteria 8964429
167 8056533604 8056533031 Bacteria 8964429
168 8056537409 8056533031 Bacteria 8964429
169 8056537572 8056533031 Bacteria 8964429
170 8056538837 8056533031 Bacteria 8964429
171 8056538973 8056533031 Bacteria 8964429
172 8056540527 8056533031 Bacteria 8964429
173 8057477747 8057473075 Bacteria 5892720
174 Ga0055541_1001150
175 Ga0055541_1001731
176 Ga0055541_1007582
177 Ga0105251_10131715
178 Ga0105244_10125812
179 Ga0105246_10000936
180 Ga0209566_100024
181 Ga0209566_100041
182 Ga0209566_100067
183 Ga0209566_100434
184 Ga0209566_100565
185 Ga0209566_104585
186 Ga0209147_108467
187 Ga0209147_108954
188 Ga0209437_100347
189 Ga0209437_100644
190 Ga0209675_1008745
191 Ga0209675_1016422
192 Ga0209025_1013644
193 Ga0209025_1026368
194 Ga0395899_0023577
195 Ga0395899_0030951
196 Ga0395899_0097822
197 Ga0395899_0123543
198 Ga0395899_0135931
199 Ga0395899_0187378
200 Ga0495661_0101967
201 Ga0496116_0003430
202 Ga0496116_0013900
203 Ga0496116_0055941
204 Ga0496116_0082026
205 Ga0496116_0135190
206 Ga0496116_0147602
207 Ga0496116_0156465
208 Ga0496116_0167631
209 Ga0496116_0290620
210 Ga0496121_0071689
211 Ga0496121_0158919
212 Ga0496121_0280507
213 Ga0496122_0000035
214 Ga0496122_0002406
215 Ga0496122_0029762
216 Ga0496122_0036960
217 Ga0496122_0062259
218 Ga0496122_0076501
219 Ga0496122_0114146
220 Ga0496122_0220467
221 Ga0496123_0016494
222 Ga0496123_0101689
223 Ga0496124_0003181
224 Ga0496125_0004574
225 Ga0496125_0027757
226 Ga0496125_0075629
227 Ga0496125_0144677
228 Ga0496126_0000429
229 Ga0496126_0000848
230 8002320681
231 2512730677
232 2512733646
233 2524188284
234 2550900240
235 2563926244
236 2571531849
237 2587741463
238 2595315236
239 2595318130
240 2595319000
241 2595319829
242 2595320553
243 2643739386
244 2644424103
245 2644425236
246 2644426400
247 2644427090
248 2644427640
249 2673823252
250 2728529465
251 2738815169
252 2793183497
253 2819672655
254 2819673938
255 2819674625
256 2821112573
257 2821113009
258 2821116096
259 2857454239
260 2857455019
261 2857456046
262 2857457294
263 2857459240
264 2857460258
265 2857478256
266 2864735962
267 2885530625
268 2888580158
269 2889044124
270 2889045468
271 2889053279
272 2889054676
273 2904118880
274 2904166185
275 2904491012
276 2904492339
277 2904757834
278 2904757872
279 2904758588
280 2904760484
281 2904761243
282 2904761359
283 2907204233
284 2919160263
285 2919161563
286 2919426298
287 2919428411
288 2919429012
289 2919431130
290 2925328784
291 2925333207
292 2925334157
293 2929209941
294 2931387563
295 2931388899
296 2938652919
297 2938653636
298 2939682911
299 2939707653
300 2945992532
301 2946055277
302 2946056592
303 2968558940
304 2968564347
305 2971413715
306 2971413754
307 2971414511
308 2971415571
309 2971415681
310 2971416142
311 2971417516
312 2980182417
313 2980184126
314 2980185064
315 2980185141
316 2980185530
317 2980185606
318 2980186165
319 2980186640
320 2980187208
321 2980187437
322 2980187893
323 2980188131
324 2980188444
325 2988227039
326 2988228436
327 2996633091
328 2996636088
329 8002318656
330 8002318796
331 8046993488
332 8046998215
333 8054466282
334 8054797574
335 8054798389
336 8054799721
337 8054801096
338 8054803746
339 8056533518
340 8056533604
341 8056537409
342 8056537572
343 8056538837
344 8056538973
345 8056540527
346 8057477747

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

118

315

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tqu-assembly1.cif.gz_N crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.7321 3 264
4tqu-assembly1.cif.gz_N crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.7009 3 264
7cad-assembly1.cif.gz_B mycobacterium smegmatis sugabc complex 0.6608 4 274
8hpn-assembly1.cif.gz_B lpqy-sugabc in state 3 0.6406 4 265
7cad-assembly1.cif.gz_B mycobacterium smegmatis sugabc complex 0.64 4 274
ID Description Score Start End Superfamily
4xtcN00 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.7233 4 267 1.10.3720.10
af_L7N652_1_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.7023 2 264 1.10.3720.10
4xtcN00 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.6972 4 267 1.10.3720.10
af_L7N652_1_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.6712 2 264 1.10.3720.10
af_I6Y1U3_2_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.6672 4 264 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A7V0V1P5-F1-model_v4 Carbohydrate ABC transporter permease 0.8167 100 274 GO:0005886
GO:0055085
AF-A0A831TFJ7-F1-model_v4 Carbohydrate ABC transporter permease 0.7947 4 274 GO:0005886
GO:0055085
AF-A0A0Q9N687-F1-model_v4 ABC transporter permease 0.7929 2 274 GO:0005886
GO:0055085
AF-A0A7V0V1P5-F1-model_v4 Carbohydrate ABC transporter permease 0.7928 100 274 GO:0005886
GO:0055085
AF-A0A0Q9N687-F1-model_v4 ABC transporter permease 0.7876 2 274 GO:0005886
GO:0055085

Map