F261614

General Info

Members Datasets Scaffolds Average Seq Length
172 134 142 375

Family's Representative Sequence

Representative Sequence 3300053109|Ga0500569_005916|Ga0500569_005916_410_1603
Length 397
Sequence MQLFYPKDNQQFCIVIKQCKIMLLKDKKVAIIGAGPVGLTMARLLQQKGMDVTVYERDKDPQARIWGGTLDLHKDSGQKAMKKAGLLESYYAMAIPMGIIMADEQGKVSFTKQPTPENQYDNPEINRSDLRKMLLDSLTNDTVVWDRKCTGLETCDGKWLLHFENGMQATTDFVIGANGGMSKVRKYVTDTEVEDTRTFIIQGDVPQPEIKCPEFYQLCNGNRLMTAYQGNLLVANPYNKGVLTYGVIFKTPAEWVDDNGLNFRNTDSIRTFLLDRFVHWDERYKQLFHSTLSFWGLPTRKLSLNKPWKNNRPLPITLIGDAAHLMPPFAGQGVNTGLVDALTLSDNLTNGKYKTLQAAINNYEQQMFIYATEAQLASGRNEIEMRHPGFSFQKFIH

Samples

Sample ID Description Type Environment
1 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
2 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
3 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
4 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
5 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
6 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
7 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
8 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
9 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
10 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
11 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
12 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
13 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
14 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
15 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
16 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
17 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
18 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
19 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
20 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
21 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
22 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
23 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
24 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
25 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
26 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
27 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
28 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
29 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
30 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
31 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
32 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
33 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
34 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
35 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
36 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
37 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
38 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
39 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
40 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
41 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
42 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
43 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
44 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
45 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
46 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
47 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
48 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
49 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
51 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
52 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
53 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
54 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
55 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
61 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
65 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
66 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
67 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
68 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
69 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
70 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
73 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
74 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
75 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
104 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
105 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
106 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
109 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
110 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
111 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
112 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
113 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
114 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
115 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
116 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
117 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
118 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
119 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
120 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
121 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
122 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
127 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
131 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
132 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
133 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
134 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.56
Metatranscriptomes 0
Isolates 17.44

Biome Distribution

Category Percentage (%)
Aerial Root 1.16
Bulb 0
Endosphere 3.49
Nodule 0
Rhizoplane 0
Rhizosphere 79.07
Stem 0
Stem Tuber 0
Unclassified 16.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10016637 3300003322 Bacteria 12462
2 rootH1_10254199 3300003323 Bacteria 2354
3 Ga0070658_10057494 3300005327 Bacteria 3163
4 Ga0070683_100016555 3300005329 Bacteria 6505
5 Ga0068869_100016008 3300005334 Bacteria 5047
6 Ga0070666_10000041 3300005335 Bacteria 112410
7 Ga0070682_100185991 3300005337 Unclassified 1455
8 Ga0068868_100214724 3300005338 Bacteria 1609
9 Ga0070669_100224162 3300005353 Bacteria 1487
10 Ga0070667_100030727 3300005367 Bacteria 4479
11 Ga0070667_100044720 3300005367 Bacteria 3720
12 Ga0070667_100205932 3300005367 Bacteria 1747
13 Ga0070679_100005903 3300005530 Bacteria 11376
14 Ga0068853_100017176 3300005539 Bacteria 5971
15 Ga0070672_100161455 3300005543 Bacteria 1859
16 Ga0068852_100004433 3300005616 Bacteria 9922
17 Ga0068852_100139276 3300005616 Bacteria 2244
18 Ga0068859_100000083 3300005617 Bacteria 87079
19 Ga0068864_100223561 3300005618 Bacteria 1738
20 Ga0068863_100118587 3300005841 Bacteria 2522
21 Ga0068863_100139375 3300005841 Bacteria 2318
22 Ga0068858_100006002 3300005842 Bacteria 11861
23 Ga0068860_100007583 3300005843 Bacteria 10858
24 Ga0097620_100000083 3300006931 Bacteria 87079
25 Ga0105244_10000050 3300009036 Bacteria 138868
26 Ga0105240_10003518 3300009093 Bacteria 24307
27 Ga0105247_10005474 3300009101 Bacteria 8001
28 Ga0105243_10000127 3300009148 Bacteria 86196
29 Ga0105241_10001084 3300009174 Bacteria 20714
30 Ga0105241_10003324 3300009174 Bacteria 11966
31 Ga0105241_10042637 3300009174 Bacteria 3434
32 Ga0105242_10041147 3300009176 Bacteria 3726
33 Ga0105237_10003989 3300009545 Bacteria 17254
34 Ga0105237_10108380 3300009545 Bacteria 2769
35 Ga0105249_10074795 3300009553 Bacteria 3136
36 Ga0105249_10089548 3300009553 Bacteria 2876
37 Ga0105249_10180162 3300009553 Bacteria 2055
38 Ga0105239_10001670 3300010375 Bacteria 29256
39 Ga0105239_10135159 3300010375 Bacteria 2745
40 Ga0105239_10162721 3300010375 Bacteria 2494
41 Ga0105239_10163772 3300010375 Bacteria 2486
42 Ga0105239_10165204 3300010375 Bacteria 2475
43 Ga0105246_10017612 3300011119 Bacteria 4544
44 Ga0157373_10008406 3300013100 Bacteria 7664
45 Ga0157371_10014566 3300013102 Bacteria 5929
46 Ga0157371_10203215 3300013102 Bacteria 1421
47 Ga0157370_10000166 3300013104 Bacteria 81040
48 Ga0157370_10005826 3300013104 Bacteria 13768
49 Ga0157370_10020345 3300013104 Bacteria 6628
50 Ga0157370_10060196 3300013104 Bacteria 3606
51 Ga0157370_10080091 3300013104 Bacteria 3075
52 Ga0157370_10141855 3300013104 Bacteria 2238
53 Ga0157369_10003877 3300013105 Bacteria 17745
54 Ga0157369_10007445 3300013105 Bacteria 12608
55 Ga0157374_10009451 3300013296 Bacteria 8370
56 Ga0157378_10017059 3300013297 Bacteria 6365
57 Ga0157378_10078822 3300013297 Bacteria 2973
58 Ga0163162_10000125 3300013306 Bacteria 68593
59 Ga0163162_10003134 3300013306 Bacteria 15791
60 Ga0163162_10048512 3300013306 Bacteria 4255
61 Ga0157372_10397409 3300013307 Bacteria 1606
62 Ga0157375_10000871 3300013308 Bacteria 26276
63 Ga0157375_10008085 3300013308 Bacteria 9202
64 Ga0157375_10247821 3300013308 Bacteria 1942
65 Ga0163163_10139678 3300014325 Bacteria 2465
66 Ga0182008_10000194 3300014497 Bacteria 47984
67 Ga0157376_10021421 3300014969 Bacteria 5020
68 Ga0182006_1000472 3300015261 Bacteria 31461
69 Ga0182005_1000193 3300015265 Bacteria 41187
70 Ga0209026_1000890 3300025250 Bacteria 15461
71 Ga0207426_1000241 3300025302 Bacteria 122857
72 Ga0207426_1008199 3300025302 Bacteria 4254
73 Ga0207655_1000480 3300025728 Bacteria 51524
74 Ga0207710_10003963 3300025900 Bacteria 6527
75 Ga0207680_10000634 3300025903 Bacteria 16562
76 Ga0207645_10001839 3300025907 Bacteria 17100
77 Ga0207643_10002794 3300025908 Bacteria 9424
78 Ga0207705_10021400 3300025909 Bacteria 4615
79 Ga0207654_10034325 3300025911 Bacteria 2818
80 Ga0207695_10002206 3300025913 Bacteria 29287
81 Ga0207671_10001555 3300025914 Bacteria 26264
82 Ga0207671_10001628 3300025914 Bacteria 25558
83 Ga0207657_10173957 3300025919 Bacteria 1743
84 Ga0207652_10008624 3300025921 Bacteria 8202
85 Ga0207681_10249174 3300025923 Bacteria 1386
86 Ga0207659_10032948 3300025926 Bacteria 3561
87 Ga0207709_10000006 3300025935 Bacteria 800946
88 Ga0207709_10000176 3300025935 Bacteria 86175
89 Ga0207691_10016276 3300025940 Bacteria 7060
90 Ga0207691_10142252 3300025940 Bacteria 2113
91 Ga0207689_10000746 3300025942 Bacteria 31196
92 Ga0207689_10003000 3300025942 Bacteria 15566
93 Ga0207661_10006109 3300025944 Bacteria 8508
94 Ga0207667_10311525 3300025949 Bacteria 1608
95 Ga0207651_10007738 3300025960 Bacteria 5743
96 Ga0207712_10101642 3300025961 Bacteria 2138
97 Ga0207658_10171564 3300025986 Bacteria 1787
98 Ga0207703_10004577 3300026035 Bacteria 11335
99 Ga0207641_10000769 3300026088 Bacteria 34362
100 Ga0207648_10001374 3300026089 Bacteria 26793
101 Ga0207674_10030072 3300026116 Bacteria 5714
102 Ga0207698_10042240 3300026142 Bacteria 3404
103 Ga0268264_10005063 3300028381 Bacteria 11160
104 Ga0395899_0031226 3300037312 Bacteria 4004
105 Ga0395900_0058347 3300037418 Bacteria 3973
106 Ga0395898_0045282 3300037466 Bacteria 4325
107 Ga0439445_0000328 3300042004 Bacteria 9260
108 Ga0466970_0095618 3300044765 Bacteria 1615
109 Ga0495627_004270 3300046453 Bacteria 6025
110 Ga0495627_021379 3300046453 Bacteria 2146
111 Ga0495632_0060403 3300046519 Bacteria 1842
112 Ga0495643_0000727 3300046522 Bacteria 37586
113 Ga0495633_0001799 3300046558 Bacteria 15821
114 Ga0495668_0002356 3300046616 Bacteria 15716
115 Ga0495625_0004614 3300046660 Bacteria 12952
116 Ga0495625_0056363 3300046660 Bacteria 2798
117 Ga0495672_0057014 3300047320 Bacteria 2270
118 Ga0495687_004583 3300047443 Bacteria 9253
119 Ga0495686_0001041 3300047472 Bacteria 33277
120 Ga0496116_0000032 3300048919 Bacteria 419997
121 Ga0496121_0000736 3300048924 Bacteria 60328
122 Ga0496121_0203037 3300048924 Bacteria 1411
123 Ga0496122_0000090 3300048925 Bacteria 205886
124 Ga0496123_0036621 3300048926 Bacteria 3477
125 Ga0496124_0045858 3300048927 Bacteria 3746
126 Ga0496125_0000059 3300048928 Bacteria 264149
127 Ga0496125_0003881 3300048928 Bacteria 17669
128 Ga0496125_0028020 3300048928 Bacteria 5095
129 Ga0496126_0011452 3300048929 Bacteria 9178
130 Ga0496126_0149492 3300048929 Bacteria 2003
131 Ga0501032_0052513 3300049569 Bacteria 2746
132 Ga0501034_0069450 3300049571 Bacteria 3534
133 Ga0501034_0234762 3300049571 Bacteria 1782
134 Ga0501067_0160065 3300049583 Bacteria 1254
135 Ga0501241_000336 3300049758 Bacteria 10376
136 Ga0501035_0091575 3300049822 Unclassified 2676
137 Ga0501044_0058016 3300049823 Bacteria 3971
138 Ga0501044_0147094 3300049823 Unclassified 2341
139 Ga0500569_005916 3300053109 Bacteria 2652
140 Ga0500658_0000826 3300053134 Bacteria 12746
141 Ga0500577_0000320 3300053142 Bacteria 12444
142 Ga0500616_0002584 3300053153 Bacteria 14882

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009553 Ga0105249_10180162 Ga0105249_101801622 294
2 iso_pu_bacteria 2818991442 2819574208 352
3 3300048924 Ga0496121_0203037 Ga0496121_0203037_216_1295 354
4 iso_pu_bacteria 2821136567 2821137519 354
5 iso_pu_bacteria 2904467357 2904467740 354
6 3300015265 Ga0182005_1000193 Ga0182005_100019310 356
7 3300048924 Ga0496121_0000736 Ga0496121_0000736_29346_30428 359
8 3300013100 Ga0157373_10008406 Ga0157373_100084065 360
9 3300025302 Ga0207426_1008199 Ga0207426_10081995 360
10 iso_pu_bacteria 2585428045 2587679714 362
11 iso_pu_bacteria 2588254255 2590601018 362
12 iso_pu_bacteria 2643221600 2644013006 363
13 iso_pu_bacteria 2643221716 2644642677 363
14 iso_pu_bacteria 2919191525 2919195247 363
15 iso_pu_bacteria 8054307821 8054310016 363
16 3300042004 Ga0439445_0000328 Ga0439445_0000328_5654_6793 364
17 3300049571 Ga0501034_0069450 Ga0501034_0069450_231_1361 364
18 3300049822 Ga0501035_0091575 Ga0501035_0091575_1055_2185 364
19 iso_pu_bacteria 2588254257 2590614148 364
20 iso_pu_bacteria 2738541273 2738700912 365
21 iso_pu_bacteria 2738543014 2739256318 365
22 iso_pu_bacteria 2929239360 2929239460 365
23 3300009148 Ga0105243_10000127 Ga0105243_1000012779 366
24 3300013102 Ga0157371_10014566 Ga0157371_100145669 366
25 3300013104 Ga0157370_10141855 Ga0157370_101418553 366
26 3300013105 Ga0157369_10003877 Ga0157369_1000387719 366
27 3300025935 Ga0207709_10000176 Ga0207709_1000017679 366
28 3300048919 Ga0496116_0000032 Ga0496116_0000032_89658_90773 366
29 3300048925 Ga0496122_0000090 Ga0496122_0000090_54701_55819 366
30 3300048926 Ga0496123_0036621 Ga0496123_0036621_1121_2239 366
31 3300048927 Ga0496124_0045858 Ga0496124_0045858_335_1450 366
32 3300048928 Ga0496125_0000059 Ga0496125_0000059_86667_87782 366
33 3300048929 Ga0496126_0011452 Ga0496126_0011452_199_1314 366
34 iso_pu_bacteria 2585428060 2587749808 366
35 iso_pu_bacteria 2585428183 2588213862 366
36 iso_pu_bacteria 2588253712 2588445952 366
37 iso_pu_bacteria 2738541279 2738736317 366
38 iso_pu_bacteria 2738541285 2738768760 366
39 iso_pu_bacteria 2738543007 2739217899 366
40 iso_pu_bacteria 2889290771 2889291049 366
41 iso_pu_bacteria 2904445276 2904447981 366
42 iso_pu_bacteria 2984572630 2984575368 366
43 iso_pu_bacteria 2984606641 2984608821 366
44 3300013104 Ga0157370_10005826 Ga0157370_100058264 367
45 3300048929 Ga0496126_0149492 Ga0496126_0149492_384_1502 367
46 iso_pu_bacteria 2739367874 2740057806 367
47 iso_pu_bacteria 2945997725 2946001660 367
48 iso_pu_bacteria 2977232053 2977236035 367
49 iso_pu_bacteria 2890737413 2890739116 368
50 3300013296 Ga0157374_10009451 Ga0157374_100094518 369
51 3300025250 Ga0209026_1000890 Ga0209026_10008902 369
52 3300025944 Ga0207661_10006109 Ga0207661_100061098 369
53 3300049758 Ga0501241_000336 Ga0501241_000336_9160_10299 369
54 3300003323 rootH1_10254199 rootH1_102541991 370
55 3300005329 Ga0070683_100016555 Ga0070683_1000165558 370
56 3300005337 Ga0070682_100185991 Ga0070682_1001859911 370
57 3300005367 Ga0070667_100030727 Ga0070667_1000307274 370
58 3300005367 Ga0070667_100205932 Ga0070667_1002059321 370
59 3300005530 Ga0070679_100005903 Ga0070679_1000059031 370
60 3300005539 Ga0068853_100017176 Ga0068853_1000171762 370
61 3300005616 Ga0068852_100004433 Ga0068852_1000044335 370
62 3300005618 Ga0068864_100223561 Ga0068864_1002235612 370
63 3300009036 Ga0105244_10000050 Ga0105244_1000005075 370
64 3300009093 Ga0105240_10003518 Ga0105240_1000351813 370
65 3300009174 Ga0105241_10003324 Ga0105241_100033242 370
66 3300009174 Ga0105241_10042637 Ga0105241_100426374 370
67 3300009176 Ga0105242_10041147 Ga0105242_100411472 370
68 3300009545 Ga0105237_10003989 Ga0105237_100039892 370
69 3300009545 Ga0105237_10108380 Ga0105237_101083802 370
70 3300009553 Ga0105249_10089548 Ga0105249_100895482 370
71 3300010375 Ga0105239_10001670 Ga0105239_1000167017 370
72 3300010375 Ga0105239_10135159 Ga0105239_101351592 370
73 3300010375 Ga0105239_10162721 Ga0105239_101627212 370
74 3300010375 Ga0105239_10163772 Ga0105239_101637722 370
75 3300013104 Ga0157370_10000166 Ga0157370_1000016643 370
76 3300013104 Ga0157370_10060196 Ga0157370_100601963 370
77 3300013297 Ga0157378_10017059 Ga0157378_100170596 370
78 3300013306 Ga0163162_10000125 Ga0163162_1000012541 370
79 3300013306 Ga0163162_10048512 Ga0163162_100485125 370
80 3300013308 Ga0157375_10000871 Ga0157375_1000087128 370
81 3300013308 Ga0157375_10008085 Ga0157375_100080855 370
82 3300013308 Ga0157375_10247821 Ga0157375_102478212 370
83 3300014325 Ga0163163_10139678 Ga0163163_101396782 370
84 3300014497 Ga0182008_10000194 Ga0182008_1000019425 370
85 3300015261 Ga0182006_1000472 Ga0182006_10004724 370
86 3300025302 Ga0207426_1000241 Ga0207426_100024111 370
87 3300025728 Ga0207655_1000480 Ga0207655_100048055 370
88 3300025907 Ga0207645_10001839 Ga0207645_100018399 370
89 3300025908 Ga0207643_10002794 Ga0207643_100027947 370
90 3300025909 Ga0207705_10021400 Ga0207705_100214002 370
91 3300025911 Ga0207654_10034325 Ga0207654_100343252 370
92 3300025913 Ga0207695_10002206 Ga0207695_1000220613 370
93 3300025914 Ga0207671_10001555 Ga0207671_1000155510 370
94 3300025921 Ga0207652_10008624 Ga0207652_100086243 370
95 3300025923 Ga0207681_10249174 Ga0207681_102491742 370
96 3300025926 Ga0207659_10032948 Ga0207659_100329483 370
97 3300025935 Ga0207709_10000006 Ga0207709_10000006137 370
98 3300025940 Ga0207691_10016276 Ga0207691_100162766 370
99 3300025942 Ga0207689_10003000 Ga0207689_1000300010 370
100 3300025949 Ga0207667_10311525 Ga0207667_103115252 370
101 3300025960 Ga0207651_10007738 Ga0207651_100077384 370
102 3300025961 Ga0207712_10101642 Ga0207712_101016422 370
103 3300025986 Ga0207658_10171564 Ga0207658_101715642 370
104 3300026089 Ga0207648_10001374 Ga0207648_1000137422 370
105 3300044765 Ga0466970_0095618 Ga0466970_0095618_141_1271 370
106 3300046453 Ga0495627_004270 Ga0495627_004270_2832_3962 370
107 3300046616 Ga0495668_0002356 Ga0495668_0002356_5470_6600 370
108 3300047443 Ga0495687_004583 Ga0495687_004583_7648_8778 370
109 3300048928 Ga0496125_0028020 Ga0496125_0028020_2088_3227 370
110 3300049823 Ga0501044_0147094 Ga0501044_0147094_678_1796 370
111 3300053109 Ga0500569_005916 Ga0500569_005916_410_1603 370
112 3300053134 Ga0500658_0000826 Ga0500658_0000826_7872_9065 370
113 3300053142 Ga0500577_0000320 Ga0500577_0000320_3657_4850 370
114 3300053153 Ga0500616_0002584 Ga0500616_0002584_12547_13683 370
115 iso_pu_bacteria 2585428187 2588233365 370
116 iso_pu_bacteria 2945924605 2945927192 370
117 3300003322 rootL2_10016637 rootL2_100166379 371
118 3300005327 Ga0070658_10057494 Ga0070658_100574942 371
119 3300005334 Ga0068869_100016008 Ga0068869_1000160085 371
120 3300005335 Ga0070666_10000041 Ga0070666_1000004169 371
121 3300005338 Ga0068868_100214724 Ga0068868_1002147241 371
122 3300005353 Ga0070669_100224162 Ga0070669_1002241622 371
123 3300005367 Ga0070667_100044720 Ga0070667_1000447202 371
124 3300005543 Ga0070672_100161455 Ga0070672_1001614551 371
125 3300005616 Ga0068852_100139276 Ga0068852_1001392762 371
126 3300005617 Ga0068859_100000083 Ga0068859_10000008372 371
127 3300005841 Ga0068863_100118587 Ga0068863_1001185873 371
128 3300005841 Ga0068863_100139375 Ga0068863_1001393752 371
129 3300005842 Ga0068858_100006002 Ga0068858_10000600216 371
130 3300005843 Ga0068860_100007583 Ga0068860_1000075832 371
131 3300006931 Ga0097620_100000083 Ga0097620_10000008372 371
132 3300009101 Ga0105247_10005474 Ga0105247_100054743 371
133 3300009174 Ga0105241_10001084 Ga0105241_1000108417 371
134 3300009553 Ga0105249_10074795 Ga0105249_100747954 371
135 3300010375 Ga0105239_10165204 Ga0105239_101652042 371
136 3300011119 Ga0105246_10017612 Ga0105246_100176122 371
137 3300013102 Ga0157371_10203215 Ga0157371_102032151 371
138 3300013104 Ga0157370_10020345 Ga0157370_100203456 371
139 3300013104 Ga0157370_10080091 Ga0157370_100800912 371
140 3300013105 Ga0157369_10007445 Ga0157369_100074459 371
141 3300013297 Ga0157378_10078822 Ga0157378_100788223 371
142 3300013306 Ga0163162_10003134 Ga0163162_1000313417 371
143 3300013307 Ga0157372_10397409 Ga0157372_103974091 371
144 3300014969 Ga0157376_10021421 Ga0157376_100214213 371
145 3300025900 Ga0207710_10003963 Ga0207710_100039631 371
146 3300025903 Ga0207680_10000634 Ga0207680_100006348 371
147 3300025914 Ga0207671_10001628 Ga0207671_100016288 371
148 3300025919 Ga0207657_10173957 Ga0207657_101739572 371
149 3300025940 Ga0207691_10142252 Ga0207691_101422522 371
150 3300025942 Ga0207689_10000746 Ga0207689_1000074617 371
151 3300026035 Ga0207703_10004577 Ga0207703_100045773 371
152 3300026088 Ga0207641_10000769 Ga0207641_100007695 371
153 3300026116 Ga0207674_10030072 Ga0207674_100300723 371
154 3300026142 Ga0207698_10042240 Ga0207698_100422403 371
155 3300028381 Ga0268264_10005063 Ga0268264_1000506315 371
156 3300037312 Ga0395899_0031226 Ga0395899_0031226_848_1999 371
157 3300037418 Ga0395900_0058347 Ga0395900_0058347_1935_3086 371
158 3300037466 Ga0395898_0045282 Ga0395898_0045282_739_1890 371
159 3300046453 Ga0495627_021379 Ga0495627_021379_544_1686 371
160 3300046519 Ga0495632_0060403 Ga0495632_0060403_99_1241 371
161 3300046522 Ga0495643_0000727 Ga0495643_0000727_6352_7473 371
162 3300046558 Ga0495633_0001799 Ga0495633_0001799_764_1906 371
163 3300046660 Ga0495625_0004614 Ga0495625_0004614_11141_12283 371
164 3300046660 Ga0495625_0056363 Ga0495625_0056363_1334_2455 371
165 3300047320 Ga0495672_0057014 Ga0495672_0057014_1079_2227 371
166 3300047472 Ga0495686_0001041 Ga0495686_0001041_17548_18690 371
167 3300048928 Ga0496125_0003881 Ga0496125_0003881_15181_16302 371
168 3300049569 Ga0501032_0052513 Ga0501032_0052513_1443_2585 371
169 3300049571 Ga0501034_0234762 Ga0501034_0234762_82_1224 371
170 3300049583 Ga0501067_0160065 Ga0501067_0160065_104_1240 371
171 3300049823 Ga0501044_0058016 Ga0501044_0058016_2277_3419 371
172 iso_pu_bacteria 2728369107 2729201839 371

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

31

69

0.94

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

28

66

0.93

PF01266

DAO

FAD dependent oxidoreductase

28

72

0.92

PF01494

FAD_binding_3

FAD binding domain

26

368

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
3v3n-assembly1.cif.gz_A crystal structure of tetx2 t280a: an adaptive mutant in complex with minocycline 0.9857 5 365
8er1-assembly1.cif.gz_A x-ray crystal structure of tet(x6) 0.9839 1 365
3v3n-assembly3.cif.gz_C crystal structure of tetx2 t280a: an adaptive mutant in complex with minocycline 0.983 2 365
3p9u-assembly1.cif.gz_A crystal structure of tetx2 from bacteroides thetaiotaomicron with substrate analogue 0.9815 2 365
4a6n-assembly1.cif.gz_A structure of the tetracycline degrading monooxygenase tetx in complex with tigecycline 0.9809 1 365
ID Description Score Start End Superfamily
2y6qB00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.977 2 365 3.50.50.60
af_P37127_327_452_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9731 6 37 3.50.50.60
af_P9WN19_146_269_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9659 8 39 3.50.50.60
2y6qB00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.964 2 365 3.50.50.60
af_M9NFH8_1768_1873_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9544 6 39 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A127SXW1-F1-model_v4 FAD binding domain protein 0.9804 1 158 GO:0004497
GO:0071949
AF-K7PFS4-F1-model_v4 Tetracycline resistance protein 0.9796 11 158 GO:0004497
GO:0071949
AF-A0A4Q3KAY1-F1-model_v4 deleted 0.9792 1 120
AF-A0A3A5YTK0-F1-model_v4 TetX family tetracycline inactivation enzyme 0.9789 6 245 GO:0004497
GO:0071949
AF-A0A127T4L8-F1-model_v4 NAD(P)-binding Rossmann-like domain protein 0.9787 1 162 GO:0004497
GO:0071949

Feature Viewer

pLDDT pTM Quality
92.05 0.91 High
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Predicted Structure (AlphaFold2)

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