F259941

General Info

Members Datasets Scaffolds Average Seq Length
172 132 344 287

Family's Representative Sequence

Representative Sequence 3300003792|Ga0055540_1031042|Ga0055540_10310421
Length 336
Sequence MPPSGGIRVRGPSGTTGAHLSGGVFVLSSLLTSIRRGVALHGAAPRSNLHRHPPMSTPLPTFPAAAADAPRRAWLREPLLHFVALGALLFAADHALVVRADDPHTIVVGPEVDAQARQTFQAARGREPNAEELAALRRVWLDNEVLYREGLAMQVDRGDTAIRERVIFKALSVVDASTKLPPHDDAVLRPWFEAHRAKYDEPARFDFEEAVLSGDSSEAAVRAFVSELNGGVPGDAKAGLRVFKRRPLDNLRQSYGEAFATALAQAPVGRWVALQTPGGWRAIRAGASVPARPAQFEAVRVAVLQDWTDAVLAEQRSAAVRVLAQKYHVKTEGEAR

Samples

Sample ID Description Type Environment
1 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
15 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
85 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
86 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
87 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
88 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
89 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
90 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
91 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
92 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
93 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
94 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
95 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
96 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
97 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
100 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
101 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
102 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
103 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
104 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
105 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
106 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
107 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
108 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
109 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
116 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
117 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
118 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
119 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
120 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
121 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
122 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
123 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
124 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
125 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
126 2643221585 Pelomonas sp. Root662 Isolate Unclassified
127 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
128 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
129 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
130 2643221656 Pelomonas sp. Root405 Isolate Unclassified
131 2738541337 Pelomonas sp. BT06 Isolate Unclassified
132 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.93
Metatranscriptomes 0
Isolates 4.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.05
Nodule 0.58
Rhizoplane 1.74
Rhizosphere 70.93
Stem 0
Stem Tuber 0
Unclassified 7.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055540_1031042 3300003792 Bacteria 1232
2 rootH1_10026455 3300003316 Bacteria 3124
3 rootL2_10114411 3300003322 Bacteria 2589
4 rootH1_10055611 3300003323 Bacteria 2443
5 Ga0055531_10000060 3300003794 Bacteria 120626
6 Ga0070658_10010085 3300005327 Bacteria 7583
7 Ga0070676_10009287 3300005328 Bacteria 5318
8 Ga0070676_10108416 3300005328 Bacteria 1726
9 Ga0070690_100038593 3300005330 Bacteria 3015
10 Ga0068869_100002815 3300005334 Bacteria 10545
11 Ga0068869_100004454 3300005334 Bacteria 8707
12 Ga0070680_100114182 3300005336 Bacteria 2250
13 Ga0070680_100131395 3300005336 Bacteria 2095
14 Ga0070682_100029555 3300005337 Bacteria 3301
15 Ga0068868_100486090 3300005338 Unclassified 1079
16 Ga0070689_100121004 3300005340 Bacteria 2091
17 Ga0070691_10008265 3300005341 Bacteria 4768
18 Ga0070692_10016699 3300005345 Bacteria 3497
19 Ga0070668_100002247 3300005347 Bacteria 14215
20 Ga0070668_100471685 3300005347 Bacteria 1082
21 Ga0070674_100332685 3300005356 Bacteria 1221
22 Ga0070701_10019524 3300005438 Bacteria 3202
23 Ga0070694_100124412 3300005444 Bacteria 1855
24 Ga0070678_100215940 3300005456 Unclassified 1592
25 Ga0068867_100051609 3300005459 Bacteria 3034
26 Ga0068867_100077550 3300005459 Unclassified 2497
27 Ga0070684_100009259 3300005535 Bacteria 7751
28 Ga0070672_100016632 3300005543 Bacteria 5272
29 Ga0070686_100005403 3300005544 Bacteria 7073
30 Ga0070696_100054031 3300005546 Bacteria 2798
31 Ga0068855_100000461 3300005563 Bacteria 50020
32 Ga0068855_100109638 3300005563 Bacteria 3169
33 Ga0068856_100116062 3300005614 Bacteria 2677
34 Ga0068856_100464299 3300005614 Bacteria 1287
35 Ga0068859_100091877 3300005617 Bacteria 3086
36 Ga0068859_100102271 3300005617 Bacteria 2923
37 Ga0068864_100030639 3300005618 Bacteria 4561
38 Ga0068866_10007501 3300005718 Bacteria 4569
39 Ga0068866_10066628 3300005718 Bacteria 1888
40 Ga0068861_100000619 3300005719 Bacteria 21045
41 Ga0068861_100001126 3300005719 Bacteria 16590
42 Ga0068861_100123254 3300005719 Unclassified 2094
43 Ga0068858_100068725 3300005842 Bacteria 3283
44 Ga0068858_100357386 3300005842 Unclassified 1400
45 Ga0068862_100003715 3300005844 Bacteria 13030
46 Ga0068862_100083199 3300005844 Bacteria 2779
47 Ga0068862_100214327 3300005844 Unclassified 1741
48 Ga0075366_10004018 3300006195 Bacteria 7863
49 Ga0097621_100021874 3300006237 Bacteria 4956
50 Ga0068871_100065369 3300006358 Bacteria 2979
51 Ga0068871_100127881 3300006358 Bacteria 2152
52 Ga0068865_100015088 3300006881 Bacteria 4923
53 Ga0097620_100091870 3300006931 Bacteria 3086
54 Ga0097620_100102272 3300006931 Bacteria 2923
55 Ga0099826_10176287 3300006948 Unclassified 1194
56 Ga0105240_10041413 3300009093 Bacteria 5878
57 Ga0105245_10002913 3300009098 Bacteria 15355
58 Ga0114129_10117586 3300009147 Bacteria 3663
59 Ga0114129_10822861 3300009147 Bacteria 1183
60 Ga0105242_10005508 3300009176 Bacteria 9772
61 Ga0105248_10386594 3300009177 Unclassified 1575
62 Ga0105237_10000360 3300009545 Bacteria 64290
63 Ga0105238_10012739 3300009551 Bacteria 8489
64 Ga0105249_10009072 3300009553 Bacteria 8696
65 Ga0157374_10116402 3300013296 Bacteria 2575
66 Ga0157378_10008952 3300013297 Bacteria 8714
67 Ga0163162_10066237 3300013306 Bacteria 3661
68 Ga0157375_10273846 3300013308 Unclassified 1850
69 Ga0157380_10091807 3300014326 Bacteria 2507
70 Ga0157379_10154491 3300014968 Unclassified 2070
71 Ga0209050_1001789 3300025298 Bacteria 21156
72 Ga0209051_1008607 3300025303 Bacteria 5379
73 Ga0209051_1012238 3300025303 Bacteria 4161
74 Ga0209051_1063203 3300025303 Bacteria 1154
75 Ga0209257_1000103 3300025304 Bacteria 245859
76 Ga0207642_10029003 3300025899 Bacteria 2286
77 Ga0207645_10014712 3300025907 Bacteria 5224
78 Ga0207705_10181582 3300025909 Bacteria 1588
79 Ga0207654_10257732 3300025911 Bacteria 1171
80 Ga0207695_10050964 3300025913 Bacteria 4350
81 Ga0207671_10002050 3300025914 Bacteria 22125
82 Ga0207694_10015421 3300025924 Bacteria 5763
83 Ga0207687_10007139 3300025927 Bacteria 7364
84 Ga0207706_10057467 3300025933 Bacteria 3428
85 Ga0207670_10126246 3300025936 Bacteria 1867
86 Ga0207704_10316805 3300025938 Bacteria 1201
87 Ga0207711_10135451 3300025941 Bacteria 2212
88 Ga0207689_10000568 3300025942 Bacteria 35322
89 Ga0207689_10002673 3300025942 Bacteria 16477
90 Ga0207661_10013119 3300025944 Bacteria 6047
91 Ga0207667_10000212 3300025949 Bacteria 82031
92 Ga0207667_10116966 3300025949 Bacteria 2747
93 Ga0207651_10111723 3300025960 Bacteria 2053
94 Ga0207712_10033002 3300025961 Bacteria 3497
95 Ga0207668_10002101 3300025972 Bacteria 11618
96 Ga0207708_10000339 3300026075 Bacteria 36860
97 Ga0207702_10185481 3300026078 Bacteria 1918
98 Ga0207702_10340869 3300026078 Bacteria 1432
99 Ga0207641_10144905 3300026088 Bacteria 2147
100 Ga0207641_10408411 3300026088 Bacteria 1305
101 Ga0207648_10018503 3300026089 Bacteria 6305
102 Ga0207648_10362451 3300026089 Bacteria 1308
103 Ga0207676_10183772 3300026095 Bacteria 1833
104 Ga0207675_100000952 3300026118 Bacteria 28872
105 Ga0207675_100031987 3300026118 Bacteria 4902
106 Ga0207675_100106629 3300026118 Bacteria 2642
107 Ga0207683_10230197 3300026121 Unclassified 1690
108 Ga0268266_10209671 3300028379 Bacteria 1786
109 Ga0268265_10002322 3300028380 Bacteria 14458
110 Ga0307517_10210865 3300028786 Bacteria 1197
111 Ga0307515_10000183 3300028794 Bacteria 154076
112 Ga0307515_10025886 3300028794 Bacteria 10124
113 Ga0307515_10047617 3300028794 Bacteria 6510
114 Ga0307515_10065527 3300028794 Bacteria 5052
115 Ga0307515_10153544 3300028794 Bacteria 2392
116 Ga0265338_10338088 3300028800 Bacteria 1086
117 Ga0307512_10178667 3300030522 Bacteria 1198
118 Ga0265328_10018538 3300031239 Bacteria 2681
119 Ga0265327_10000158 3300031251 Bacteria 145905
120 Ga0265316_10000026 3300031344 Bacteria 165508
121 Ga0265316_10219030 3300031344 Unclassified 1405
122 Ga0307509_10000679 3300031507 Bacteria 58021
123 Ga0307509_10001009 3300031507 Bacteria 48339
124 Ga0307509_10001917 3300031507 Bacteria 34353
125 Ga0307408_100000038 3300031548 Bacteria 183170
126 Ga0307514_10000738 3300031649 Bacteria 55551
127 Ga0307514_10098070 3300031649 Bacteria 2113
128 Ga0307514_10127411 3300031649 Bacteria 1761
129 Ga0265314_10010774 3300031711 Bacteria 7604
130 Ga0265342_10001546 3300031712 Bacteria 21272
131 Ga0307510_10004164 3300033180 Bacteria 16982
132 Ga0307510_10073878 3300033180 Bacteria 3374
133 Ga0373931_0012223 3300035691 Bacteria 4157
134 Ga0395905_0002041 3300037471 Bacteria 23069
135 Ga0395905_0004144 3300037471 Bacteria 15172
136 Ga0395905_0089294 3300037471 Bacteria 2888
137 Ga0451807_1547641 3300041486 Bacteria 1875
138 Ga0451833_0499552 3300041491 Bacteria 1995
139 Ga0451853_1300282 3300041512 Unclassified 1551
140 Ga0451576_0109900 3300045051 Bacteria 2869
141 Ga0495592_0000131 3300046454 Bacteria 66382
142 Ga0495592_0187949 3300046454 Bacteria 1402
143 Ga0495585_0037014 3300046492 Bacteria 2749
144 Ga0495606_0130047 3300046507 Bacteria 1497
145 Ga0495620_0131274 3300046515 Bacteria 983
146 Ga0495632_0111374 3300046519 Bacteria 1285
147 Ga0495625_0018063 3300046660 Bacteria 5512
148 Ga0495657_0183616 3300046675 Bacteria 1282
149 Ga0495686_0000749 3300047472 Bacteria 42954
150 Ga0496102_0008525 3300048905 Bacteria 8789
151 Ga0496110_0546469 3300048913 Bacteria 1053
152 nmdc:mga0k408_3919_c1 3300050493 Bacteria 7891
153 nmdc:mga05p37_163712_c1 3300050507 Bacteria 2715
154 nmdc:mga05p37_797835_c1 3300050507 Bacteria 1033
155 Ga0500644_0010164 3300053088 Bacteria 2539
156 Ga0500650_0000011 3300053098 Bacteria 81697
157 Ga0500594_0001301 3300053118 Bacteria 5420
158 Ga0500559_0000013 3300053136 Bacteria 163436
159 Ga0500564_126879 3300053138 Bacteria 1107
160 Ga0500588_0004565 3300053146 Bacteria 3011
161 Ga0500590_042194 3300053148 Bacteria 2343
162 Ga0500622_0011835 3300053156 Bacteria 4741
163 Ga0500636_0030860 3300053177 Bacteria 3172
164 Ga0500587_001770 3300053739 Bacteria 3065
165 Ga0501084_0015527 3300054114 Bacteria 6316
166 2643935570 2643221585 Bacteria 5812563
167 2644221032 2643221639 Bacteria 6649903
168 2644259874 2643221646 Bacteria 6433402
169 2644301829 2643221654 Bacteria 5273570
170 2644317353 2643221656 Bacteria 5809961
171 2739057535 2738541337 Bacteria 6183410
172 2989393924 2989392574 Bacteria 4554005
173 Ga0055540_1031042
174 rootH1_10026455
175 rootL2_10114411
176 rootH1_10055611
177 Ga0055531_10000060
178 Ga0070658_10010085
179 Ga0070676_10009287
180 Ga0070676_10108416
181 Ga0070690_100038593
182 Ga0068869_100002815
183 Ga0068869_100004454
184 Ga0070680_100114182
185 Ga0070680_100131395
186 Ga0070682_100029555
187 Ga0068868_100486090
188 Ga0070689_100121004
189 Ga0070691_10008265
190 Ga0070692_10016699
191 Ga0070668_100002247
192 Ga0070668_100471685
193 Ga0070674_100332685
194 Ga0070701_10019524
195 Ga0070694_100124412
196 Ga0070678_100215940
197 Ga0068867_100051609
198 Ga0068867_100077550
199 Ga0070684_100009259
200 Ga0070672_100016632
201 Ga0070686_100005403
202 Ga0070696_100054031
203 Ga0068855_100000461
204 Ga0068855_100109638
205 Ga0068856_100116062
206 Ga0068856_100464299
207 Ga0068859_100091877
208 Ga0068859_100102271
209 Ga0068864_100030639
210 Ga0068866_10007501
211 Ga0068866_10066628
212 Ga0068861_100000619
213 Ga0068861_100001126
214 Ga0068861_100123254
215 Ga0068858_100068725
216 Ga0068858_100357386
217 Ga0068862_100003715
218 Ga0068862_100083199
219 Ga0068862_100214327
220 Ga0075366_10004018
221 Ga0097621_100021874
222 Ga0068871_100065369
223 Ga0068871_100127881
224 Ga0068865_100015088
225 Ga0097620_100091870
226 Ga0097620_100102272
227 Ga0099826_10176287
228 Ga0105240_10041413
229 Ga0105245_10002913
230 Ga0114129_10117586
231 Ga0114129_10822861
232 Ga0105242_10005508
233 Ga0105248_10386594
234 Ga0105237_10000360
235 Ga0105238_10012739
236 Ga0105249_10009072
237 Ga0157374_10116402
238 Ga0157378_10008952
239 Ga0163162_10066237
240 Ga0157375_10273846
241 Ga0157380_10091807
242 Ga0157379_10154491
243 Ga0209050_1001789
244 Ga0209051_1008607
245 Ga0209051_1012238
246 Ga0209051_1063203
247 Ga0209257_1000103
248 Ga0207642_10029003
249 Ga0207645_10014712
250 Ga0207705_10181582
251 Ga0207654_10257732
252 Ga0207695_10050964
253 Ga0207671_10002050
254 Ga0207694_10015421
255 Ga0207687_10007139
256 Ga0207706_10057467
257 Ga0207670_10126246
258 Ga0207704_10316805
259 Ga0207711_10135451
260 Ga0207689_10000568
261 Ga0207689_10002673
262 Ga0207661_10013119
263 Ga0207667_10000212
264 Ga0207667_10116966
265 Ga0207651_10111723
266 Ga0207712_10033002
267 Ga0207668_10002101
268 Ga0207708_10000339
269 Ga0207702_10185481
270 Ga0207702_10340869
271 Ga0207641_10144905
272 Ga0207641_10408411
273 Ga0207648_10018503
274 Ga0207648_10362451
275 Ga0207676_10183772
276 Ga0207675_100000952
277 Ga0207675_100031987
278 Ga0207675_100106629
279 Ga0207683_10230197
280 Ga0268266_10209671
281 Ga0268265_10002322
282 Ga0307517_10210865
283 Ga0307515_10000183
284 Ga0307515_10025886
285 Ga0307515_10047617
286 Ga0307515_10065527
287 Ga0307515_10153544
288 Ga0265338_10338088
289 Ga0307512_10178667
290 Ga0265328_10018538
291 Ga0265327_10000158
292 Ga0265316_10000026
293 Ga0265316_10219030
294 Ga0307509_10000679
295 Ga0307509_10001009
296 Ga0307509_10001917
297 Ga0307408_100000038
298 Ga0307514_10000738
299 Ga0307514_10098070
300 Ga0307514_10127411
301 Ga0265314_10010774
302 Ga0265342_10001546
303 Ga0307510_10004164
304 Ga0307510_10073878
305 Ga0373931_0012223
306 Ga0395905_0002041
307 Ga0395905_0004144
308 Ga0395905_0089294
309 Ga0451807_1547641
310 Ga0451833_0499552
311 Ga0451853_1300282
312 Ga0451576_0109900
313 Ga0495592_0000131
314 Ga0495592_0187949
315 Ga0495585_0037014
316 Ga0495606_0130047
317 Ga0495620_0131274
318 Ga0495632_0111374
319 Ga0495625_0018063
320 Ga0495657_0183616
321 Ga0495686_0000749
322 Ga0496102_0008525
323 Ga0496110_0546469
324 nmdc:mga0k408_3919_c1
325 nmdc:mga05p37_163712_c1
326 nmdc:mga05p37_797835_c1
327 Ga0500644_0010164
328 Ga0500650_0000011
329 Ga0500594_0001301
330 Ga0500559_0000013
331 Ga0500564_126879
332 Ga0500588_0004565
333 Ga0500590_042194
334 Ga0500622_0011835
335 Ga0500636_0030860
336 Ga0500587_001770
337 Ga0501084_0015527
338 2643935570
339 2644221032
340 2644259874
341 2644301829
342 2644317353
343 2739057535
344 2989393924

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13145

Rotamase_2

PPIC-type PPIASE domain

183

301

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5xqi-assembly1.cif.gz_A crystal structure of full-length human rogdi 0.5088 216 275
5xqi-assembly1.cif.gz_B crystal structure of full-length human rogdi 0.5007 216 275
5kiy-assembly1.cif.gz_A p97 nd1-a232e in complex with vimp 0.4892 200 245
6y5d-assembly1.cif.gz_P structure of human cgas (k394e) bound to the nucleosome 0.4845 63 149
7ln4-assembly1.cif.gz_D cryo-em structure of human p97 in complex with npl4/ufd1 and polyubiquitinated ub-eos (fom, class 3) 0.4843 200 245
ID Description Score Start End Superfamily
3rfwA03 Alpha Beta;Roll;Chitinase A; domain 3; 0.6611 149 244 3.10.50.40
af_C6T9G3_83_177_3.10.50.40 Alpha Beta;Roll;Chitinase A; domain 3; 0.6187 152 239 3.10.50.40
1tafB00 Mainly Alpha;Orthogonal Bundle;Histone, subunit A;Histone, subunit A 0.6181 63 122 1.10.20.10
3rfwA03 Alpha Beta;Roll;Chitinase A; domain 3; 0.5893 149 244 3.10.50.40
af_C6T9G3_83_177_3.10.50.40 Alpha Beta;Roll;Chitinase A; domain 3; 0.5749 152 239 3.10.50.40
ID Description Score Start End GO Terms
AF-A0A257KZ25-F1-model_v4 PpiC domain-containing protein 0.9083 158 286 GO:0003755
AF-A0A257KZ25-F1-model_v4 PpiC domain-containing protein 0.8949 158 286 GO:0003755
AF-A0A349SW60-F1-model_v4 PpiC domain-containing protein 0.8224 90 285 GO:0003755
AF-A0A4R1VVH4-F1-model_v4 Parvulin-like PPIase (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase plp) (Rotamase plp) 0.7462 113 276 GO:0003755
AF-A0A349SW60-F1-model_v4 PpiC domain-containing protein 0.7188 90 285 GO:0003755

Map