F250023

General Info

Members Datasets Scaffolds Average Seq Length
167 108 334 793

Family's Representative Sequence

Representative Sequence 3300005458|Ga0070681_10011135|Ga0070681_100111355
Length 838
Sequence MAKQTARQAQPYTIALPLPPTQRFLPLLLLLFVGSGCAALIYEIVWFQLIQLVIGSSAVSLGVLLSTFMGGMCLGSLLLPRFVSPNQHPLRIYALLEGGIGILGLIVLVTVPLVGGVYTATAMHGLAGIILRGLVCAICLLPPTLLMGATLPAIARWVETTPTGVSWLGFFYGSNIAGAVFGCLLAGFYLLRVHDMATTTFVAVLINFSVAGIGLALSRRAPHRPGVQTTPEGVVEEAPGLPRSNFIYTAIALSGLSALGAEVVWTRLLSLMLGASVYTFSIILAVFLIALGIGSSVGSILARDTPSRISLAWCQALLCGAVAWAAFMMARSLPYWPINPTLSPSPWITFQLDLLRSAVAVFPAALLWGASFPLAIGAVMGPGQDAGRLVARVYAANTVGAIIGSGLFSIYMIPHFGTQASQRALIVVAMTSAAVVFASLIGRRSPEPANAKRDPRTSPIPTLGVAGLVTAGVALVIALVLVTKVPKVPPGLIAYGRFLPTYTSEPKYLYVGEGMNSSIAVSEEESGARNFHVAGKVEASSLPQDMRLQRMLGQMSALFTNDPKSVLVVGFGAGVTAGSFVTHPGIKRIVICEIEPLIPQVVSTYFTRENYNVAHDPRVQIVYDDARHFILTTKEKFDVITSDPIHPWVKGAATLYTKEYFELVKQHLNPGGVVTQWVPLYESYPDVVKSEVATFFNVFPDGTIWSNDIQGKGYDVLLAGHATPQSINIDSLQARLAKPENSRVLESLQEVGFNSGLSLLSTYAGQARDLAPWLQDAEINRDSNLRLQYLAGMGLNSYQSAGILDDILKYRRFPENLFVGAESERQYLRQQFGGVSGP

Samples

Sample ID Description Type Environment
1 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
55 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
60 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
61 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
62 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
63 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
64 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
68 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
69 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
70 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
71 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
72 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
73 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
74 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
75 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
76 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
77 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
78 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
79 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
82 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
83 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
84 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
85 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
86 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
90 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
91 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
96 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
97 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
98 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
108 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.8
Stem 0
Stem Tuber 0
Unclassified 7.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070681_10011135 3300005458 Bacteria 8901
2 Ga0070683_100000001 3300005329 Bacteria 529385
3 Ga0070683_100000016 3300005329 Bacteria 207892
4 Ga0070683_100000169 3300005329 Bacteria 42888
5 Ga0070680_100000932 3300005336 Bacteria 20699
6 Ga0070687_100012337 3300005343 Bacteria 3772
7 Ga0070675_100005118 3300005354 Bacteria 10004
8 Ga0070709_10001524 3300005434 Bacteria 12499
9 Ga0070714_100007495 3300005435 Bacteria 8492
10 Ga0070714_100038982 3300005435 Bacteria 3998
11 Ga0070713_100000015 3300005436 Bacteria 121525
12 Ga0070713_100002795 3300005436 Bacteria 11404
13 Ga0070713_100051231 3300005436 Unclassified 3413
14 Ga0070705_100000587 3300005440 Bacteria 21187
15 Ga0070694_100001107 3300005444 Bacteria 15428
16 Ga0070681_10002161 3300005458 Bacteria 17886
17 Ga0070681_10002515 3300005458 Bacteria 16799
18 Ga0070699_100000678 3300005518 Bacteria 31777
19 Ga0070679_100000857 3300005530 Bacteria 26450
20 Ga0070679_100007918 3300005530 Bacteria 9971
21 Ga0070679_100028030 3300005530 Bacteria 5549
22 Ga0070684_100000005 3300005535 Bacteria 230164
23 Ga0070684_100000006 3300005535 Bacteria 227715
24 Ga0070684_100036828 3300005535 Bacteria 4193
25 Ga0070684_100041904 3300005535 Bacteria 3950
26 Ga0070686_100020254 3300005544 Bacteria 3933
27 Ga0070695_100000015 3300005545 Bacteria 67427
28 Ga0070696_100000033 3300005546 Bacteria 63922
29 Ga0068855_100012148 3300005563 Bacteria 10405
30 Ga0068855_100071073 3300005563 Bacteria 4047
31 Ga0068858_100010146 3300005842 Bacteria 8942
32 Ga0068860_100043976 3300005843 Bacteria 4259
33 Ga0070717_10000294 3300006028 Bacteria 33561
34 Ga0097621_100046657 3300006237 Bacteria 3507
35 Ga0075434_100000478 3300006871 Bacteria 29961
36 Ga0068865_100015045 3300006881 Bacteria 4928
37 Ga0097620_100030503 3300006931 Bacteria 5411
38 Ga0105240_10000904 3300009093 Bacteria 53010
39 Ga0105240_10002259 3300009093 Bacteria 31243
40 Ga0105240_10009366 3300009093 Bacteria 13882
41 Ga0105240_10043400 3300009093 Bacteria 5722
42 Ga0105240_10106302 3300009093 Unclassified 3404
43 Ga0105245_10002156 3300009098 Bacteria 17826
44 Ga0114129_10001768 3300009147 Bacteria 29453
45 Ga0114129_10209208 3300009147 Bacteria 2638
46 Ga0105241_10023566 3300009174 Bacteria 4565
47 Ga0105242_10003209 3300009176 Bacteria 12731
48 Ga0105242_10011241 3300009176 Bacteria 6881
49 Ga0105238_10000651 3300009551 Bacteria 36462
50 Ga0105238_10006635 3300009551 Bacteria 11540
51 Ga0099796_10005524 3300010159 Bacteria 3162
52 Ga0105239_10010547 3300010375 Bacteria 10332
53 Ga0157370_10003670 3300013104 Bacteria 17924
54 Ga0157369_10064013 3300013105 Bacteria 3961
55 Ga0157374_10039625 3300013296 Bacteria 4336
56 Ga0157378_10017618 3300013297 Bacteria 6271
57 Ga0157376_10039197 3300014969 Bacteria 3862
58 Ga0157376_10042763 3300014969 Unclassified 3714
59 Ga0207707_10002846 3300025912 Bacteria 15440
60 Ga0207707_10019039 3300025912 Bacteria 5990
61 Ga0207707_10025729 3300025912 Bacteria 5148
62 Ga0207695_10011181 3300025913 Bacteria 10891
63 Ga0207695_10048881 3300025913 Unclassified 4463
64 Ga0207695_10067721 3300025913 Bacteria 3661
65 Ga0207671_10061832 3300025914 Bacteria 2779
66 Ga0207660_10002293 3300025917 Bacteria 12605
67 Ga0207660_10002886 3300025917 Bacteria 11230
68 Ga0207662_10010877 3300025918 Bacteria 5030
69 Ga0207652_10003102 3300025921 Bacteria 13850
70 Ga0207652_10020297 3300025921 Bacteria 5470
71 Ga0207652_10034703 3300025921 Bacteria 4253
72 Ga0207694_10011696 3300025924 Bacteria 6620
73 Ga0207694_10027841 3300025924 Unclassified 4307
74 Ga0207659_10007825 3300025926 Bacteria 6603
75 Ga0207659_10032387 3300025926 Unclassified 3587
76 Ga0207700_10001093 3300025928 Bacteria 15630
77 Ga0207700_10001786 3300025928 Bacteria 12213
78 Ga0207700_10072630 3300025928 Bacteria 2654
79 Ga0207686_10007234 3300025934 Bacteria 5979
80 Ga0207686_10015398 3300025934 Bacteria 4276
81 Ga0207670_10007304 3300025936 Bacteria 6153
82 Ga0207661_10000005 3300025944 Bacteria 557888
83 Ga0207661_10000033 3300025944 Bacteria 156468
84 Ga0207661_10004921 3300025944 Bacteria 9366
85 Ga0207661_10013815 3300025944 Bacteria 5903
86 Ga0207679_10002795 3300025945 Bacteria 10811
87 Ga0207667_10045348 3300025949 Bacteria 4657
88 Ga0207667_10090766 3300025949 Unclassified 3157
89 Ga0207703_10014584 3300026035 Bacteria 6131
90 Ga0268266_10041467 3300028379 Bacteria 3928
91 Ga0265318_10002371 3300028577 Bacteria 10100
92 Ga0265327_10004159 3300031251 Bacteria 13064
93 Ga0265316_10001990 3300031344 Bacteria 21515
94 Ga0265316_10008225 3300031344 Bacteria 9707
95 Ga0265316_10013281 3300031344 Bacteria 7326
96 Ga0265316_10016254 3300031344 Bacteria 6459
97 Ga0265316_10026347 3300031344 Bacteria 4838
98 Ga0265313_10001808 3300031595 Bacteria 19561
99 Ga0265313_10006957 3300031595 Bacteria 7854
100 Ga0265314_10002721 3300031711 Bacteria 17690
101 Ga0373926_0000749 3300035083 Bacteria 9054
102 Ga0373934_0001369 3300035086 Bacteria 8873
103 Ga0373954_0007465 3300035118 Unclassified 4784
104 Ga0373956_0004992 3300035119 Bacteria 5315
105 Ga0373927_0006185 3300035695 Bacteria 8179
106 Ga0373937_0042788 3300036401 Unclassified 4133
107 Ga0373925_0018332 3300037068 Bacteria 5087
108 Ga0436365_0555583 3300039437 Bacteria 16084
109 Ga0436365_0975168 3300039437 Bacteria 8533
110 Ga0495651_0011503 3300046462 Bacteria 6796
111 Ga0495653_0007530 3300046463 Bacteria 8903
112 Ga0495582_0007054 3300046473 Bacteria 6244
113 Ga0495582_0017703 3300046473 Bacteria 3896
114 Ga0495582_0033495 3300046473 Bacteria 2824
115 Ga0495664_0018459 3300046477 Unclassified 3997
116 Ga0495628_0013727 3300046516 Bacteria 6809
117 Ga0495630_0000983 3300046517 Bacteria 19802
118 Ga0495666_0010826 3300046526 Bacteria 4548
119 Ga0495652_0059396 3300046529 Bacteria 3235
120 Ga0495665_0001778 3300046531 Bacteria 11593
121 Ga0495640_0012539 3300046533 Bacteria 6470
122 Ga0495586_0000625 3300046535 Bacteria 20415
123 Ga0495587_0005763 3300046536 Bacteria 8072
124 Ga0495645_0000386 3300046543 Bacteria 30519
125 Ga0495645_0003139 3300046543 Bacteria 11199
126 Ga0495667_0044339 3300046559 Unclassified 2946
127 Ga0495635_0003800 3300046663 Bacteria 10485
128 Ga0495659_0007047 3300046664 Bacteria 3556
129 Ga0495588_0002290 3300046674 Bacteria 8197
130 Ga0495657_0006661 3300046675 Bacteria 9021
131 Ga0495599_0030713 3300046678 Unclassified 3372
132 Ga0495623_0005500 3300046679 Bacteria 8274
133 Ga0495658_0003839 3300046683 Bacteria 7436
134 Ga0495613_0015140 3300046689 Bacteria 5730
135 Ga0495613_0025739 3300046689 Bacteria 4385
136 Ga0495600_0000577 3300046809 Bacteria 18961
137 Ga0495581_0006516 3300047315 Bacteria 6771
138 Ga0495581_0038868 3300047315 Bacteria 2755
139 Ga0495604_0022952 3300047317 Bacteria 4979
140 Ga0495604_0046009 3300047317 Bacteria 3403
141 Ga0495674_0003409 3300047319 Bacteria 15439
142 Ga0495674_0011463 3300047319 Bacteria 8364
143 Ga0495674_0033511 3300047319 Unclassified 4651
144 Ga0495676_0008769 3300047321 Bacteria 9247
145 Ga0495680_0035574 3300047322 Bacteria 4010
146 Ga0495675_0018665 3300047444 Bacteria 4404
147 Ga0495684_0003120 3300047471 Bacteria 12994
148 Ga0495593_0000979 3300047673 Bacteria 16745
149 Ga0495614_0001464 3300048089 Bacteria 10204
150 Ga0501033_0006712 3300049570 Bacteria 8991
151 Ga0501033_0011918 3300049570 Bacteria 6643
152 Ga0501033_0024370 3300049570 Bacteria 4565
153 Ga0501033_0025713 3300049570 Bacteria 4435
154 Ga0501034_0065764 3300049571 Bacteria 3639
155 Ga0501036_0061717 3300049572 Bacteria 3175
156 Ga0501046_0004970 3300049580 Bacteria 11935
157 Ga0501046_0015853 3300049580 Bacteria 6324
158 Ga0501047_0008633 3300049581 Bacteria 9624
159 Ga0501047_0023368 3300049581 Bacteria 5936
160 Ga0501047_0037214 3300049581 Bacteria 4705
161 Ga0501047_0054545 3300049581 Bacteria 3866
162 Ga0501047_0080453 3300049581 Bacteria 3131
163 Ga0501035_0020089 3300049822 Bacteria 6134
164 Ga0501044_0009075 3300049823 Bacteria 10870
165 nmdc:mga05p37_2218_c1 3300050507 Bacteria 22635
166 nmdc:mga08y16_6540_c1 3300050511 Bacteria 12219
167 nmdc:mga0n895_14694_c1 3300050512 Bacteria 7120
168 Ga0070681_10011135
169 Ga0070683_100000001
170 Ga0070683_100000016
171 Ga0070683_100000169
172 Ga0070680_100000932
173 Ga0070687_100012337
174 Ga0070675_100005118
175 Ga0070709_10001524
176 Ga0070714_100007495
177 Ga0070714_100038982
178 Ga0070713_100000015
179 Ga0070713_100002795
180 Ga0070713_100051231
181 Ga0070705_100000587
182 Ga0070694_100001107
183 Ga0070681_10002161
184 Ga0070681_10002515
185 Ga0070699_100000678
186 Ga0070679_100000857
187 Ga0070679_100007918
188 Ga0070679_100028030
189 Ga0070684_100000005
190 Ga0070684_100000006
191 Ga0070684_100036828
192 Ga0070684_100041904
193 Ga0070686_100020254
194 Ga0070695_100000015
195 Ga0070696_100000033
196 Ga0068855_100012148
197 Ga0068855_100071073
198 Ga0068858_100010146
199 Ga0068860_100043976
200 Ga0070717_10000294
201 Ga0097621_100046657
202 Ga0075434_100000478
203 Ga0068865_100015045
204 Ga0097620_100030503
205 Ga0105240_10000904
206 Ga0105240_10002259
207 Ga0105240_10009366
208 Ga0105240_10043400
209 Ga0105240_10106302
210 Ga0105245_10002156
211 Ga0114129_10001768
212 Ga0114129_10209208
213 Ga0105241_10023566
214 Ga0105242_10003209
215 Ga0105242_10011241
216 Ga0105238_10000651
217 Ga0105238_10006635
218 Ga0099796_10005524
219 Ga0105239_10010547
220 Ga0157370_10003670
221 Ga0157369_10064013
222 Ga0157374_10039625
223 Ga0157378_10017618
224 Ga0157376_10039197
225 Ga0157376_10042763
226 Ga0207707_10002846
227 Ga0207707_10019039
228 Ga0207707_10025729
229 Ga0207695_10011181
230 Ga0207695_10048881
231 Ga0207695_10067721
232 Ga0207671_10061832
233 Ga0207660_10002293
234 Ga0207660_10002886
235 Ga0207662_10010877
236 Ga0207652_10003102
237 Ga0207652_10020297
238 Ga0207652_10034703
239 Ga0207694_10011696
240 Ga0207694_10027841
241 Ga0207659_10007825
242 Ga0207659_10032387
243 Ga0207700_10001093
244 Ga0207700_10001786
245 Ga0207700_10072630
246 Ga0207686_10007234
247 Ga0207686_10015398
248 Ga0207670_10007304
249 Ga0207661_10000005
250 Ga0207661_10000033
251 Ga0207661_10004921
252 Ga0207661_10013815
253 Ga0207679_10002795
254 Ga0207667_10045348
255 Ga0207667_10090766
256 Ga0207703_10014584
257 Ga0268266_10041467
258 Ga0265318_10002371
259 Ga0265327_10004159
260 Ga0265316_10001990
261 Ga0265316_10008225
262 Ga0265316_10013281
263 Ga0265316_10016254
264 Ga0265316_10026347
265 Ga0265313_10001808
266 Ga0265313_10006957
267 Ga0265314_10002721
268 Ga0373926_0000749
269 Ga0373934_0001369
270 Ga0373954_0007465
271 Ga0373956_0004992
272 Ga0373927_0006185
273 Ga0373937_0042788
274 Ga0373925_0018332
275 Ga0436365_0555583
276 Ga0436365_0975168
277 Ga0495651_0011503
278 Ga0495653_0007530
279 Ga0495582_0007054
280 Ga0495582_0017703
281 Ga0495582_0033495
282 Ga0495664_0018459
283 Ga0495628_0013727
284 Ga0495630_0000983
285 Ga0495666_0010826
286 Ga0495652_0059396
287 Ga0495665_0001778
288 Ga0495640_0012539
289 Ga0495586_0000625
290 Ga0495587_0005763
291 Ga0495645_0000386
292 Ga0495645_0003139
293 Ga0495667_0044339
294 Ga0495635_0003800
295 Ga0495659_0007047
296 Ga0495588_0002290
297 Ga0495657_0006661
298 Ga0495599_0030713
299 Ga0495623_0005500
300 Ga0495658_0003839
301 Ga0495613_0015140
302 Ga0495613_0025739
303 Ga0495600_0000577
304 Ga0495581_0006516
305 Ga0495581_0038868
306 Ga0495604_0022952
307 Ga0495604_0046009
308 Ga0495674_0003409
309 Ga0495674_0011463
310 Ga0495674_0033511
311 Ga0495676_0008769
312 Ga0495680_0035574
313 Ga0495675_0018665
314 Ga0495684_0003120
315 Ga0495593_0000979
316 Ga0495614_0001464
317 Ga0501033_0006712
318 Ga0501033_0011918
319 Ga0501033_0024370
320 Ga0501033_0025713
321 Ga0501034_0065764
322 Ga0501036_0061717
323 Ga0501046_0004970
324 Ga0501046_0015853
325 Ga0501047_0008633
326 Ga0501047_0023368
327 Ga0501047_0037214
328 Ga0501047_0054545
329 Ga0501047_0080453
330 Ga0501035_0020089
331 Ga0501044_0009075
332 nmdc:mga05p37_2218_c1
333 nmdc:mga08y16_6540_c1
334 nmdc:mga0n895_14694_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01564

Spermine_synth

Spermine/spermidine synthase domain

545

700

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3b7p-assembly1.cif.gz_A crystal structure of spermidine synthase from plasmodium falciparum in complex with spermine 0.8929 467 686
6bq2-assembly1.cif.gz_B crystal structure of medicago truncatula thermospermine synthase (mttsps) 0.8865 470 698
6i1n-assembly1.cif.gz_A plasmodium falciparum spermidine synthase in complex with n-(3-aminopropyl)-trans-cyclohexane-1,4-diamine 0.8655 470 681
6o63-assembly1.cif.gz_A crystal structure of arabidopsis thaliana spermidine synthase isoform 1 (atspds1) 0.8651 470 690
2q41-assembly1.cif.gz_D ensemble refinement of the protein crystal structure of spermidine synthase from arabidopsis thaliana gene at1g23820 0.8632 470 682
ID Description Score Start End Superfamily
1jq3D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8967 508 682 3.40.50.150
af_B4E3X6_90_272_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8723 509 682 3.40.50.150
1jq3D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8465 508 682 3.40.50.150
af_B4E3X6_90_272_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8278 509 682 3.40.50.150
1uirA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8265 505 711 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A1F2V225-F1-model_v4 Polyamine aminopropyltransferase (Putrescine aminopropyltransferase) (PAPT) (Spermidine synthase) (SPDS) (SPDSY) (EC 2.5.1.16) 0.9461 10 794 GO:0004766
GO:0005829
GO:0005886
GO:0008295
AF-A0A1F2V225-F1-model_v4 Polyamine aminopropyltransferase (Putrescine aminopropyltransferase) (PAPT) (Spermidine synthase) (SPDS) (SPDSY) (EC 2.5.1.16) 0.9414 10 794 GO:0004766
GO:0005829
GO:0005886
GO:0008295
AF-A0A3B9V8K5-F1-model_v4 Spermidine synthase 0.9279 1 784 GO:0004766
GO:0005829
GO:0008295
GO:0016020
GO:0022857
AF-A0A6G3LS75-F1-model_v4 Methyltransferase domain-containing protein 0.9263 471 639 GO:0006596
GO:0008168
GO:0010487
GO:0032259
AF-A0A6G1A719-F1-model_v4 SPEE synthase 0.9194 470 610 GO:0004766
GO:0005829
GO:0008295

Map