F234927

General Info

Members Datasets Scaffolds Average Seq Length
160 102 320 214

Family's Representative Sequence

Representative Sequence 3300031344|Ga0265316_10063509|Ga0265316_100635092
Length 233
Sequence LLYSGVVAGGESGETAMSINEPAGRPIRVLIIDDHALFRESVALSLGRDPDLRIEHCGSIRDALPLLTQQTFDLVLLDHDLGTERASQFLPAARQSGYEGRVLVVTAWVSDTEARRLLRQGVSGIFLKQGELAGLAGAIRTVAGGGTWLDRAFAALGEDPAAAPQSGPPAFNDRQRKVLRFVLEGLSNKEIAWRLQISESYVKAILQSLFQKTGVRTRGQLVRVAVEQYEDQL

Samples

Sample ID Description Type Environment
1 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
61 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
62 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
63 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
64 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
67 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
75 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
76 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
77 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
80 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
81 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
82 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
83 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
84 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
85 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
86 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
87 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
88 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
89 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
96 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
102 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.25
Rhizosphere 98.12
Stem 0
Stem Tuber 0
Unclassified 31.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265316_10063509 3300031344 Bacteria 2863
2 Ga0070683_100000430 3300005329 Bacteria 29132
3 Ga0070683_100160213 3300005329 Unclassified 2135
4 Ga0070683_100293962 3300005329 Bacteria 1545
5 Ga0070683_101271491 3300005329 Bacteria 707
6 Ga0070670_100395846 3300005331 Bacteria 1219
7 Ga0070680_100397237 3300005336 Unclassified 1175
8 Ga0068868_100377282 3300005338 Unclassified 1219
9 Ga0070688_100681491 3300005365 Unclassified 794
10 Ga0070667_100339618 3300005367 Bacteria 1358
11 Ga0070709_10146590 3300005434 Unclassified 1627
12 Ga0070709_10284968 3300005434 Bacteria 1202
13 Ga0070713_100008959 3300005436 Bacteria 7131
14 Ga0070713_100076005 3300005436 Bacteria 2851
15 Ga0070713_100080359 3300005436 Bacteria 2780
16 Ga0070711_100067570 3300005439 Bacteria 2508
17 Ga0070711_100419463 3300005439 Bacteria 1090
18 Ga0070678_100809373 3300005456 Unclassified 851
19 Ga0070681_10086540 3300005458 Bacteria 3087
20 Ga0070681_10105711 3300005458 Bacteria 2757
21 Ga0070685_10272512 3300005466 Unclassified 1130
22 Ga0070699_100175504 3300005518 Bacteria 1900
23 Ga0070679_100326131 3300005530 Unclassified 1484
24 Ga0070684_100000418 3300005535 Bacteria 29139
25 Ga0070684_100647733 3300005535 Bacteria 983
26 Ga0070665_100174075 3300005548 Bacteria 2153
27 Ga0070665_100213969 3300005548 Unclassified 1928
28 Ga0070665_100217436 3300005548 Bacteria 1911
29 Ga0068855_100219457 3300005563 Unclassified 2133
30 Ga0068855_100388534 3300005563 Bacteria 1531
31 Ga0068855_100549071 3300005563 Unclassified 1251
32 Ga0068856_100532334 3300005614 Unclassified 1196
33 Ga0068859_100517492 3300005617 Unclassified 1288
34 Ga0068864_100529268 3300005618 Unclassified 1137
35 Ga0068864_101122033 3300005618 Unclassified 783
36 Ga0070717_10026819 3300006028 Bacteria 4601
37 Ga0070717_10058043 3300006028 Bacteria 3200
38 Ga0070716_100066363 3300006173 Unclassified 2104
39 Ga0097621_100322658 3300006237 Bacteria 1368
40 Ga0068871_100550746 3300006358 Bacteria 1045
41 Ga0075428_100389818 3300006844 Unclassified 1493
42 Ga0097620_100517494 3300006931 Unclassified 1288
43 Ga0105240_10001187 3300009093 Bacteria 45557
44 Ga0105240_10002704 3300009093 Bacteria 28178
45 Ga0105240_10082137 3300009093 Bacteria 3958
46 Ga0105240_10801998 3300009093 Unclassified 1020
47 Ga0111539_10847172 3300009094 Bacteria 1064
48 Ga0105245_11012795 3300009098 Bacteria 875
49 Ga0114129_10288046 3300009147 Bacteria 2192
50 Ga0105248_10148810 3300009177 Unclassified 2642
51 Ga0105248_10336991 3300009177 Bacteria 1698
52 Ga0105248_10396452 3300009177 Bacteria 1554
53 Ga0105248_10806514 3300009177 Unclassified 1059
54 Ga0105237_10001552 3300009545 Bacteria 29969
55 Ga0105237_10014179 3300009545 Bacteria 8344
56 Ga0105237_10199271 3300009545 Bacteria 2001
57 Ga0105238_10273686 3300009551 Bacteria 1669
58 Ga0105238_10302418 3300009551 Unclassified 1583
59 Ga0105238_10418794 3300009551 Unclassified 1334
60 Ga0105238_10768699 3300009551 Unclassified 978
61 Ga0157370_10142699 3300013104 Bacteria 2231
62 Ga0157369_10037803 3300013105 Bacteria 5283
63 Ga0157374_10285296 3300013296 Unclassified 1630
64 Ga0157378_10450857 3300013297 Bacteria 1277
65 Ga0157378_10460449 3300013297 Unclassified 1264
66 Ga0163162_10315674 3300013306 Bacteria 1695
67 Ga0157372_10442041 3300013307 Bacteria 1516
68 Ga0157375_10904492 3300013308 Unclassified 1026
69 Ga0163163_10018051 3300014325 Bacteria 6592
70 Ga0163163_10051532 3300014325 Bacteria 4058
71 Ga0157379_10321542 3300014968 Unclassified 1413
72 Ga0157376_10130319 3300014969 Bacteria 2243
73 Ga0157376_10394326 3300014969 Unclassified 1337
74 Ga0207707_10132459 3300025912 Bacteria 2180
75 Ga0207707_10655350 3300025912 Unclassified 885
76 Ga0207695_10006526 3300025913 Bacteria 15100
77 Ga0207695_10023315 3300025913 Bacteria 6998
78 Ga0207695_10113374 3300025913 Bacteria 2687
79 Ga0207671_10006259 3300025914 Bacteria 10658
80 Ga0207671_10029490 3300025914 Bacteria 4097
81 Ga0207671_10446313 3300025914 Unclassified 1030
82 Ga0207663_10044329 3300025916 Unclassified 2730
83 Ga0207663_10858197 3300025916 Bacteria 725
84 Ga0207660_10300791 3300025917 Bacteria 1277
85 Ga0207652_10747301 3300025921 Unclassified 871
86 Ga0207694_10268898 3300025924 Bacteria 1398
87 Ga0207694_10340553 3300025924 Bacteria 1240
88 Ga0207700_10109748 3300025928 Unclassified 2218
89 Ga0207686_10563755 3300025934 Bacteria 892
90 Ga0207665_10089058 3300025939 Unclassified 2137
91 Ga0207711_10051506 3300025941 Bacteria 3526
92 Ga0207711_10386400 3300025941 Bacteria 1299
93 Ga0207661_10001883 3300025944 Bacteria 14368
94 Ga0207661_10244143 3300025944 Bacteria 1594
95 Ga0207667_10184131 3300025949 Unclassified 2144
96 Ga0207667_10413846 3300025949 Bacteria 1372
97 Ga0207702_10726308 3300026078 Unclassified 980
98 Ga0207683_11076748 3300026121 Unclassified 746
99 Ga0207428_10297845 3300027907 Bacteria 1194
100 Ga0265323_10000480 3300028653 Bacteria 22501
101 Ga0265330_10163513 3300031235 Bacteria 945
102 Ga0265325_10000787 3300031241 Bacteria 22950
103 Ga0265325_10100339 3300031241 Bacteria 1418
104 Ga0265331_10017967 3300031250 Bacteria 3677
105 Ga0265331_10087137 3300031250 Unclassified 1446
106 Ga0265316_10005475 3300031344 Bacteria 12322
107 Ga0265316_10016457 3300031344 Bacteria 6412
108 Ga0265316_10062670 3300031344 Bacteria 2885
109 Ga0265316_10115386 3300031344 Bacteria 2030
110 Ga0265316_10456406 3300031344 Unclassified 916
111 Ga0265314_10026273 3300031711 Bacteria 4376
112 Ga0373935_0402066 3300035692 Bacteria 984
113 Ga0373933_0144683 3300035724 Unclassified 1503
114 Ga0373937_0651180 3300036401 Unclassified 999
115 Ga0373925_0142333 3300037068 Bacteria 1878
116 Ga0436365_1030980 3300039437 Bacteria 4238
117 Ga0451576_0095306 3300045051 Unclassified 3095
118 Ga0451576_1266930 3300045051 Unclassified 769
119 Ga0495580_0021662 3300046472 Bacteria 4740
120 Ga0495580_0021893 3300046472 Bacteria 4712
121 Ga0495580_0099043 3300046472 Bacteria 2028
122 Ga0495582_0022162 3300046473 Bacteria 3476
123 Ga0495662_0008002 3300046476 Bacteria 5206
124 Ga0495664_0022101 3300046477 Bacteria 3682
125 Ga0495608_0048788 3300046511 Bacteria 2812
126 Ga0495628_0053690 3300046516 Bacteria 3179
127 Ga0495628_0177843 3300046516 Bacteria 1611
128 Ga0495628_0546312 3300046516 Unclassified 832
129 Ga0495630_0244702 3300046517 Bacteria 1370
130 Ga0495652_0376446 3300046529 Unclassified 1011
131 Ga0495640_0109658 3300046533 Bacteria 1805
132 Ga0495587_0069211 3300046536 Bacteria 2055
133 Ga0495645_0057632 3300046543 Bacteria 2819
134 Ga0495667_0011233 3300046559 Bacteria 6063
135 Ga0495634_0029741 3300046642 Bacteria 3781
136 Ga0495635_0224661 3300046663 Bacteria 1269
137 Ga0495635_0639969 3300046663 Bacteria 692
138 Ga0495599_0009140 3300046678 Bacteria 6045
139 Ga0495623_0041342 3300046679 Bacteria 2941
140 Ga0495623_0044973 3300046679 Unclassified 2805
141 Ga0495646_0081319 3300046680 Bacteria 1888
142 Ga0495658_0320975 3300046683 Unclassified 982
143 Ga0495613_0073044 3300046689 Bacteria 2500
144 Ga0495624_0155709 3300046690 Unclassified 1396
145 Ga0495674_0031327 3300047319 Bacteria 4831
146 Ga0495674_0100063 3300047319 Bacteria 2467
147 Ga0495674_0185252 3300047319 Bacteria 1732
148 Ga0495674_0202126 3300047319 Bacteria 1648
149 Ga0495674_0659527 3300047319 Unclassified 824
150 Ga0495680_0036680 3300047322 Bacteria 3933
151 Ga0495675_0522282 3300047444 Unclassified 680
152 Ga0495684_0020994 3300047471 Bacteria 5030
153 Ga0495684_0687467 3300047471 Bacteria 680
154 Ga0495602_0021201 3300048088 Bacteria 6403
155 Ga0496112_0451163 3300048915 Bacteria 1224
156 Ga0496115_0494873 3300048918 Bacteria 983
157 nmdc:mga05p37_183903_c1 3300050507 Bacteria 2541
158 nmdc:mga08y16_364596_c1 3300050511 Bacteria 1483
159 Ga0495601_0030875 3300053077 Bacteria 3329
160 Ga0501082_0000322 3300060353 Bacteria 42523
161 Ga0265316_10063509
162 Ga0070683_100000430
163 Ga0070683_100160213
164 Ga0070683_100293962
165 Ga0070683_101271491
166 Ga0070670_100395846
167 Ga0070680_100397237
168 Ga0068868_100377282
169 Ga0070688_100681491
170 Ga0070667_100339618
171 Ga0070709_10146590
172 Ga0070709_10284968
173 Ga0070713_100008959
174 Ga0070713_100076005
175 Ga0070713_100080359
176 Ga0070711_100067570
177 Ga0070711_100419463
178 Ga0070678_100809373
179 Ga0070681_10086540
180 Ga0070681_10105711
181 Ga0070685_10272512
182 Ga0070699_100175504
183 Ga0070679_100326131
184 Ga0070684_100000418
185 Ga0070684_100647733
186 Ga0070665_100174075
187 Ga0070665_100213969
188 Ga0070665_100217436
189 Ga0068855_100219457
190 Ga0068855_100388534
191 Ga0068855_100549071
192 Ga0068856_100532334
193 Ga0068859_100517492
194 Ga0068864_100529268
195 Ga0068864_101122033
196 Ga0070717_10026819
197 Ga0070717_10058043
198 Ga0070716_100066363
199 Ga0097621_100322658
200 Ga0068871_100550746
201 Ga0075428_100389818
202 Ga0097620_100517494
203 Ga0105240_10001187
204 Ga0105240_10002704
205 Ga0105240_10082137
206 Ga0105240_10801998
207 Ga0111539_10847172
208 Ga0105245_11012795
209 Ga0114129_10288046
210 Ga0105248_10148810
211 Ga0105248_10336991
212 Ga0105248_10396452
213 Ga0105248_10806514
214 Ga0105237_10001552
215 Ga0105237_10014179
216 Ga0105237_10199271
217 Ga0105238_10273686
218 Ga0105238_10302418
219 Ga0105238_10418794
220 Ga0105238_10768699
221 Ga0157370_10142699
222 Ga0157369_10037803
223 Ga0157374_10285296
224 Ga0157378_10450857
225 Ga0157378_10460449
226 Ga0163162_10315674
227 Ga0157372_10442041
228 Ga0157375_10904492
229 Ga0163163_10018051
230 Ga0163163_10051532
231 Ga0157379_10321542
232 Ga0157376_10130319
233 Ga0157376_10394326
234 Ga0207707_10132459
235 Ga0207707_10655350
236 Ga0207695_10006526
237 Ga0207695_10023315
238 Ga0207695_10113374
239 Ga0207671_10006259
240 Ga0207671_10029490
241 Ga0207671_10446313
242 Ga0207663_10044329
243 Ga0207663_10858197
244 Ga0207660_10300791
245 Ga0207652_10747301
246 Ga0207694_10268898
247 Ga0207694_10340553
248 Ga0207700_10109748
249 Ga0207686_10563755
250 Ga0207665_10089058
251 Ga0207711_10051506
252 Ga0207711_10386400
253 Ga0207661_10001883
254 Ga0207661_10244143
255 Ga0207667_10184131
256 Ga0207667_10413846
257 Ga0207702_10726308
258 Ga0207683_11076748
259 Ga0207428_10297845
260 Ga0265323_10000480
261 Ga0265330_10163513
262 Ga0265325_10000787
263 Ga0265325_10100339
264 Ga0265331_10017967
265 Ga0265331_10087137
266 Ga0265316_10005475
267 Ga0265316_10016457
268 Ga0265316_10062670
269 Ga0265316_10115386
270 Ga0265316_10456406
271 Ga0265314_10026273
272 Ga0373935_0402066
273 Ga0373933_0144683
274 Ga0373937_0651180
275 Ga0373925_0142333
276 Ga0436365_1030980
277 Ga0451576_0095306
278 Ga0451576_1266930
279 Ga0495580_0021662
280 Ga0495580_0021893
281 Ga0495580_0099043
282 Ga0495582_0022162
283 Ga0495662_0008002
284 Ga0495664_0022101
285 Ga0495608_0048788
286 Ga0495628_0053690
287 Ga0495628_0177843
288 Ga0495628_0546312
289 Ga0495630_0244702
290 Ga0495652_0376446
291 Ga0495640_0109658
292 Ga0495587_0069211
293 Ga0495645_0057632
294 Ga0495667_0011233
295 Ga0495634_0029741
296 Ga0495635_0224661
297 Ga0495635_0639969
298 Ga0495599_0009140
299 Ga0495623_0041342
300 Ga0495623_0044973
301 Ga0495646_0081319
302 Ga0495658_0320975
303 Ga0495613_0073044
304 Ga0495624_0155709
305 Ga0495674_0031327
306 Ga0495674_0100063
307 Ga0495674_0185252
308 Ga0495674_0202126
309 Ga0495674_0659527
310 Ga0495680_0036680
311 Ga0495675_0522282
312 Ga0495684_0020994
313 Ga0495684_0687467
314 Ga0495602_0021201
315 Ga0496112_0451163
316 Ga0496115_0494873
317 nmdc:mga05p37_183903_c1
318 nmdc:mga08y16_364596_c1
319 Ga0495601_0030875
320 Ga0501082_0000322

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

170

225

0.97

PF00072

Response_reg

Response regulator receiver domain

29

140

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9818 151 206
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9767 152 206
6kju-assembly1.cif.gz_B huge conformation shift of vibrio cholerae vqma dimer in the absence of target dna provides insight into dna-binding mechanisms of luxr-type receptors 0.9746 151 207
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.974 152 206
6ugl-assembly1.cif.gz_A vqma bound to dpo 0.9595 152 209
ID Description Score Start End Superfamily
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9818 151 206 1.10.10.10
4if4C02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9649 152 208 1.10.10.10
4if4B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9645 153 208 1.10.10.10
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9624 152 210 1.10.10.10
af_P39404_120_210_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9621 151 206 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A846QP41-F1-model_v4 DNA-binding NtrC family response regulator 0.9746 7 122 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A257XE67-F1-model_v4 deleted 0.9403 9 125
AF-A0A6I1J7I5-F1-model_v4 Two component transcriptional regulator 0.939 6 126 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A7J2NLV0-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9365 9 126 GO:0000160
GO:0006355
GO:0016772
AF-A0A842WRU1-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9351 9 126 GO:0000155
GO:0005524

Map