F227616

General Info

Members Datasets Scaffolds Average Seq Length
157 103 129 634

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100000613|Ga0307408_10000061310
Length 674
Sequence MEKQFLQKYHTNTGGSLLNKLRSMPFKKTLLVGALALTVCVTNTSCKKFLDVVPDNTSEIKHAFKIRNEAEKYLYTCYSFLPKDGDGWFNVGMFAGDEMWLPQNDLAHWHNAFRIAQGQQNKSDPLFDEWTGLRKGNGNFNAHLKIFMAIRHCNIFIENMQDLTKVPDITLTERERWIGEGMFLKAFYHYYLLRMYGPVPIIDKNAAEDATGDELYYKRMPVDDVVNYVSDLLDQCLEKVPTTISQENTELGRIDRNIVLAVKAKLWLLAASPLFNGNPDYAGFKDKEGVALFNPTFDPTKWEKARDAAKAAIVAAEANGHFLYRFNDVGFKFSDTTKKQLSIRNAITARWNPEVIWGLSNSYFINEALCMPAMARGRNTDRFQLMGVWGAPVKIAKMFYTKNGVPIEEDKTLNFNNYTEVKTAGVSDRFNIEQGYQTARLNFDREHRFYADLGFDGGIWYMKDANDQKNDVDNRFYVQAKNAERSGFGHFTNWNHTGYFIKKLVNWESTTNGQNQGPSWKGYPWPEIRLADLYLMYAEALNEVEPGSATAIEYLDKIRDRAGLKGVVESWSNYSSNAGKYTTQAGLRQIIQQERLIELAFEGQRFWDLRRWKLAAEELNKDITGFNILGKTTENYNVERFIFSQTFIAPRDYLWPIGNHDTRRNPKLVENLGW

Samples

Sample ID Description Type Environment
1 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 2738541284 Pedobacter sp. YR016 Isolate Unclassified
4 2738541302 Pedobacter sp. CF074 Isolate Unclassified
5 2739367651 Pedobacter sp. OK291 Isolate Unclassified
6 2739367656 Pedobacter sp. CF523 Isolate Unclassified
7 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
8 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
9 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
10 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
11 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
12 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
13 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
14 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
15 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
16 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
17 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
18 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
19 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
20 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
21 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
22 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
23 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
24 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
25 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
26 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
27 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
28 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
29 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
30 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
31 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
32 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
36 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
37 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
54 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
55 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
56 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
59 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
60 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
75 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
76 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
80 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
81 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
85 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
86 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
87 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
88 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
89 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
90 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
91 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
94 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
95 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
96 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
97 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
98 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
101 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.17
Metatranscriptomes 0
Isolates 17.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.01
Nodule 0
Rhizoplane 1.27
Rhizosphere 65.61
Stem 0
Stem Tuber 0
Unclassified 19.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10004446 3300001989 Bacteria 5371
2 JGI24737J22298_10001329 3300001990 Bacteria 8757
3 JGI24735J21928_10000006 3300002067 Bacteria 339303
4 JGI25162J39368_1000094 3300002737 Bacteria 98697
5 rootH2_10198926 3300003320 Bacteria 2782
6 rootL2_10117736 3300003322 Bacteria 3234
7 rootL2_10127088 3300003322 Bacteria 4609
8 rootL2_10187826 3300003322 Bacteria 5308
9 rootH1_10068598 3300003323 Bacteria 10877
10 Ga0055536_1000003 3300003781 Bacteria 447744
11 Ga0055530_10001650 3300003791 Bacteria 15916
12 Ga0055531_10000138 3300003794 Bacteria 82997
13 Ga0065714_10002672 3300005288 Bacteria 19690
14 Ga0065714_10012154 3300005288 Bacteria 6467
15 Ga0065704_10071547 3300005289 Bacteria 10753
16 Ga0065704_10072579 3300005289 Bacteria 8308
17 Ga0065704_10073728 3300005289 Bacteria 6841
18 Ga0068853_100001245 3300005539 Bacteria 18191
19 Ga0070665_100000041 3300005548 Bacteria 297849
20 Ga0068855_100004876 3300005563 Bacteria 16375
21 Ga0068855_100060508 3300005563 Bacteria 4429
22 Ga0068860_100007456 3300005843 Bacteria 10938
23 Ga0105240_10000208 3300009093 Bacteria 118950
24 Ga0105240_10000225 3300009093 Bacteria 112806
25 Ga0105240_10005356 3300009093 Bacteria 19140
26 Ga0105240_10034745 3300009093 Bacteria 6500
27 Ga0105240_10115388 3300009093 Bacteria 3242
28 Ga0114129_10002300 3300009147 Bacteria 26489
29 Ga0114129_10014766 3300009147 Bacteria 11128
30 Ga0105243_10000002 3300009148 Bacteria 856281
31 Ga0105241_10003405 3300009174 Bacteria 11834
32 Ga0105237_10000552 3300009545 Bacteria 52409
33 Ga0105237_10011868 3300009545 Bacteria 9211
34 Ga0105237_10015806 3300009545 Bacteria 7850
35 Ga0105238_10007920 3300009551 Bacteria 10632
36 Ga0105238_10021390 3300009551 Bacteria 6589
37 Ga0105239_10000718 3300010375 Bacteria 47004
38 Ga0105239_10002897 3300010375 Bacteria 21432
39 Ga0105239_10005457 3300010375 Bacteria 14924
40 Ga0105239_10010042 3300010375 Bacteria 10614
41 Ga0157373_10002368 3300013100 Bacteria 14315
42 Ga0157371_10000009 3300013102 Bacteria 392895
43 Ga0157371_10000995 3300013102 Bacteria 31388
44 Ga0157370_10003526 3300013104 Bacteria 18338
45 Ga0157370_10146639 3300013104 Bacteria 2197
46 Ga0157370_10146736 3300013104 Bacteria 2197
47 Ga0163162_10017451 3300013306 Bacteria 7023
48 Ga0157372_10000193 3300013307 Bacteria 67258
49 Ga0157372_10223511 3300013307 Bacteria 2183
50 Ga0157375_10085401 3300013308 Bacteria 3206
51 Ga0182008_10000004 3300014497 Bacteria 436804
52 Ga0182006_1000115 3300015261 Bacteria 86290
53 Ga0182006_1000519 3300015261 Bacteria 29349
54 Ga0182005_1001966 3300015265 Bacteria 7722
55 Ga0183373_1006 3300015682 Bacteria 328276
56 Ga0163161_10000608 3300017792 Bacteria 28632
57 Ga0163161_10063230 3300017792 Bacteria 2697
58 Ga0209436_102466 3300025208 Bacteria 5538
59 Ga0209437_100077 3300025233 Bacteria 286656
60 Ga0209676_1000001 3300025292 Bacteria 1852142
61 Ga0209050_1000016 3300025298 Bacteria 729149
62 Ga0207426_1000446 3300025302 Bacteria 66148
63 Ga0207426_1006704 3300025302 Bacteria 4942
64 Ga0209257_1000001 3300025304 Bacteria 2274655
65 Ga0207695_10000257 3300025913 Bacteria 134853
66 Ga0207695_10000643 3300025913 Bacteria 69314
67 Ga0207695_10001368 3300025913 Bacteria 41364
68 Ga0207695_10043090 3300025913 Bacteria 4813
69 Ga0207671_10009245 3300025914 Bacteria 8258
70 Ga0207671_10012350 3300025914 Bacteria 6871
71 Ga0207671_10016947 3300025914 Bacteria 5639
72 Ga0207694_10006713 3300025924 Bacteria 8745
73 Ga0207709_10000003 3300025935 Bacteria 1050072
74 Ga0207667_10002912 3300025949 Bacteria 21248
75 Ga0207667_10007408 3300025949 Bacteria 13195
76 Ga0207639_10003540 3300026041 Bacteria 10493
77 Ga0268266_10000014 3300028379 Bacteria 644033
78 Ga0268264_10005202 3300028381 Bacteria 11020
79 Ga0307517_10001269 3300028786 Bacteria 42402
80 Ga0307517_10002277 3300028786 Bacteria 30968
81 Ga0307515_10002577 3300028794 Bacteria 39123
82 Ga0307515_10047079 3300028794 Bacteria 6570
83 Ga0307509_10015714 3300031507 Bacteria 8812
84 Ga0307408_100000516 3300031548 Bacteria 33359
85 Ga0307408_100000613 3300031548 Bacteria 30399
86 Ga0307408_100012378 3300031548 Bacteria 5649
87 Ga0307508_10003071 3300031616 Bacteria 17165
88 Ga0307516_10000656 3300031730 Bacteria 46771
89 Ga0307405_10000018 3300031731 Bacteria 182495
90 Ga0307412_10001947 3300031911 Bacteria 11419
91 Ga0307507_10000015 3300033179 Bacteria 237419
92 Ga0439457_007227 3300042014 Bacteria 2674
93 Ga0439457_007724 3300042014 Bacteria 2572
94 Ga0466972_0000089 3300044658 Bacteria 82556
95 Ga0466972_0008880 3300044658 Bacteria 5042
96 Ga0466957_0003690 3300044842 Bacteria 8454
97 Ga0495650_0000014 3300046471 Bacteria 581606
98 Ga0495585_0000031 3300046492 Bacteria 143899
99 Ga0495606_0000020 3300046507 Bacteria 274490
100 Ga0495610_0000422 3300046512 Bacteria 43532
101 Ga0495610_0001415 3300046512 Bacteria 21222
102 Ga0495610_0001806 3300046512 Bacteria 18598
103 Ga0495616_0001888 3300046513 Bacteria 14154
104 Ga0495637_0020218 3300046520 Unclassified 3066
105 Ga0495633_0000302 3300046558 Bacteria 56283
106 Ga0495633_0006130 3300046558 Bacteria 7197
107 Ga0495668_0048230 3300046616 Bacteria 2363
108 Ga0495625_0000009 3300046660 Bacteria 404954
109 Ga0495661_0001418 3300046665 Bacteria 20083
110 Ga0495649_0000008 3300046694 Bacteria 483706
111 Ga0495687_000026 3300047443 Bacteria 301190
112 Ga0496101_0084410 3300048904 Bacteria 2352
113 Ga0496117_0004934 3300048920 Bacteria 14333
114 Ga0496121_0000028 3300048924 Bacteria 439193
115 Ga0496126_0089887 3300048929 Bacteria 2702
116 Ga0501225_0000306 3300049705 Bacteria 15317
117 nmdc:mga0k408_6316_c2 3300050493 Bacteria 3977
118 nmdc:mga05p37_10249_c1 3300050507 Bacteria 11128
119 nmdc:mga05p37_2901_c1 3300050507 Bacteria 19893
120 Ga0500622_0000010 3300053156 Bacteria 398804
121 Ga0500622_0000012 3300053156 Bacteria 383183
122 Ga0500622_0000044 3300053156 Bacteria 158778
123 Ga0500622_0000050 3300053156 Bacteria 145556
124 Ga0500622_0000473 3300053156 Bacteria 37893
125 Ga0500622_0000688 3300053156 Bacteria 29897
126 Ga0500622_0001337 3300053156 Bacteria 19977
127 Ga0500622_0002860 3300053156 Bacteria 12078
128 Ga0500622_0003048 3300053156 Bacteria 11578
129 Ga0500622_0004954 3300053156 Bacteria 8115

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046520 Ga0495637_0020218 Ga0495637_0020218_1338_2975 522
2 3300053156 Ga0500622_0001337 Ga0500622_0001337_66_1760 540
3 3300046616 Ga0495668_0048230 Ga0495668_0048230_104_2059 589
4 3300009093 Ga0105240_10000208 Ga0105240_1000020832 593
5 3300025913 Ga0207695_10000257 Ga0207695_1000025753 593
6 3300010375 Ga0105239_10002897 Ga0105239_1000289710 595
7 3300031730 Ga0307516_10000656 Ga0307516_100006566 598
8 3300044842 Ga0466957_0003690 Ga0466957_0003690_599_2476 598
9 3300003322 rootL2_10187826 rootL2_101878262 599
10 3300031616 Ga0307508_10003071 Ga0307508_100030716 600
11 3300048924 Ga0496121_0000028 Ga0496121_0000028_416025_417932 601
12 3300028786 Ga0307517_10001269 Ga0307517_100012692 604
13 3300005539 Ga0068853_100001245 Ga0068853_1000012452 606
14 3300009093 Ga0105240_10000225 Ga0105240_1000022545 606
15 3300009093 Ga0105240_10034745 Ga0105240_100347452 606
16 3300009551 Ga0105238_10021390 Ga0105238_100213902 606
17 3300025302 Ga0207426_1006704 Ga0207426_10067042 606
18 3300025913 Ga0207695_10000643 Ga0207695_1000064314 606
19 3300026041 Ga0207639_10003540 Ga0207639_100035402 606
20 3300002737 JGI25162J39368_1000094 JGI25162J39368_100009459 607
21 3300010375 Ga0105239_10000718 Ga0105239_1000071830 607
22 3300014497 Ga0182008_10000004 Ga0182008_1000000442 607
23 3300025233 Ga0209437_100077 Ga0209437_100077187 607
24 3300028794 Ga0307515_10002577 Ga0307515_100025776 607
25 3300046558 Ga0495633_0000302 Ga0495633_0000302_19204_21087 607
26 3300015265 Ga0182005_1001966 Ga0182005_10019662 608
27 3300025208 Ga0209436_102466 Ga0209436_1024662 608
28 3300025302 Ga0207426_1000446 Ga0207426_10004464 608
29 iso_pu_bacteria 2818991460 2819679727 608
30 iso_pu_bacteria 2919186247 2919190138 608
31 iso_pu_bacteria 2939664404 2939668419 608
32 3300005288 Ga0065714_10002672 Ga0065714_100026727 610
33 3300005289 Ga0065704_10071547 Ga0065704_100715475 610
34 3300005548 Ga0070665_100000041 Ga0070665_100000041117 610
35 3300009147 Ga0114129_10002300 Ga0114129_100023004 610
36 3300013102 Ga0157371_10000995 Ga0157371_1000099511 610
37 3300013104 Ga0157370_10003526 Ga0157370_100035267 610
38 3300028379 Ga0268266_10000014 Ga0268266_1000001478 610
39 3300050507 nmdc:mga05p37_2901_c1 nmdc:mga05p37_2901_c1_6363_8276 610
40 3300048904 Ga0496101_0084410 Ga0496101_0084410_259_2118 611
41 3300003322 rootL2_10127088 rootL2_101270883 612
42 3300009148 Ga0105243_10000002 Ga0105243_10000002127 612
43 3300025935 Ga0207709_10000003 Ga0207709_10000003127 612
44 iso_pu_bacteria 2852627209 2852628937 612
45 iso_pu_bacteria 2919186247 2919188991 612
46 iso_pu_bacteria 2939664404 2939666854 612
47 3300009147 Ga0114129_10014766 Ga0114129_100147662 613
48 3300050507 nmdc:mga05p37_10249_c1 nmdc:mga05p37_10249_c1_2292_4262 613
49 3300053156 Ga0500622_0000473 Ga0500622_0000473_6059_7924 613
50 iso_pu_bacteria 2738541284 2738762311 613
51 3300015682 Ga0183373_1006 Ga0183373_100643 614
52 3300025914 Ga0207671_10009245 Ga0207671_100092456 615
53 3300025924 Ga0207694_10006713 Ga0207694_100067132 615
54 iso_pu_bacteria 2884791551 2884795200 615
55 3300013104 Ga0157370_10146639 Ga0157370_101466392 616
56 3300013104 Ga0157370_10146736 Ga0157370_101467362 616
57 3300053156 Ga0500622_0002860 Ga0500622_0002860_2316_4235 616
58 3300017792 Ga0163161_10063230 Ga0163161_100632302 617
59 3300046512 Ga0495610_0001806 Ga0495610_0001806_12699_14588 617
60 3300048920 Ga0496117_0004934 Ga0496117_0004934_2771_4696 617
61 iso_pu_bacteria 2818991442 2819572281 617
62 3300005843 Ga0068860_100007456 Ga0068860_1000074562 619
63 3300025913 Ga0207695_10043090 Ga0207695_100430904 619
64 3300028381 Ga0268264_10005202 Ga0268264_100052022 619
65 3300042014 Ga0439457_007227 Ga0439457_007227_385_2331 619
66 3300053156 Ga0500622_0000012 Ga0500622_0000012_339742_341655 619
67 3300053156 Ga0500622_0000050 Ga0500622_0000050_122683_124596 619
68 3300053156 Ga0500622_0004954 Ga0500622_0004954_1731_3722 619
69 iso_pu_bacteria 2738541278 2738727284 619
70 3300003323 rootH1_10068598 rootH1_100685983 620
71 3300009093 Ga0105240_10115388 Ga0105240_101153882 620
72 3300009545 Ga0105237_10000552 Ga0105237_1000055219 620
73 3300010375 Ga0105239_10010042 Ga0105239_100100423 620
74 3300025914 Ga0207671_10012350 Ga0207671_100123502 620
75 3300031548 Ga0307408_100000613 Ga0307408_10000061310 620
76 3300031911 Ga0307412_10001947 Ga0307412_100019472 620
77 iso_pu_bacteria 2896344016 2896344331 620
78 3300003322 rootL2_10117736 rootL2_101177362 621
79 3300009093 Ga0105240_10005356 Ga0105240_100053564 621
80 3300009174 Ga0105241_10003405 Ga0105241_100034054 621
81 3300009551 Ga0105238_10007920 Ga0105238_100079206 621
82 3300013307 Ga0157372_10223511 Ga0157372_102235111 621
83 3300025913 Ga0207695_10001368 Ga0207695_1000136817 621
84 3300031548 Ga0307408_100000516 Ga0307408_1000005163 621
85 3300031548 Ga0307408_100012378 Ga0307408_1000123782 621
86 3300044658 Ga0466972_0008880 Ga0466972_0008880_2466_4397 621
87 3300046512 Ga0495610_0000422 Ga0495610_0000422_35046_37061 621
88 3300047443 Ga0495687_000026 Ga0495687_000026_119656_121593 621
89 3300049705 Ga0501225_0000306 Ga0501225_0000306_10250_12223 621
90 3300053156 Ga0500622_0003048 Ga0500622_0003048_5692_7611 621
91 iso_pu_bacteria 2821136567 2821140355 621
92 iso_pu_bacteria 2904467357 2904473938 621
93 3300053156 Ga0500622_0000688 Ga0500622_0000688_20264_22177 623
94 iso_pu_bacteria 2739367656 2739617672 624
95 3300042014 Ga0439457_007724 Ga0439457_007724_501_2462 625
96 3300044658 Ga0466972_0000089 Ga0466972_0000089_34998_36959 625
97 iso_pu_bacteria 2599185184 2599476903 625
98 iso_pu_bacteria 2852623160 2852623981 625
99 iso_pu_bacteria 2884791551 2884793070 625
100 iso_pu_bacteria 2884933994 2884937116 625
101 iso_pu_bacteria 2884933994 2884937254 625
102 iso_pu_bacteria 2896109856 2896113896 625
103 iso_pu_bacteria 2928078545 2928078814 625
104 iso_pu_bacteria 2928147474 2928151508 625
105 iso_pu_bacteria 2932082852 2932085473 625
106 iso_pu_bacteria 2738541302 2738853119 627
107 iso_pu_bacteria 2739367651 2739591004 627
108 iso_pu_bacteria 2842909656 2842909972 627
109 iso_pu_bacteria 2945997725 2946000310 627
110 3300003781 Ga0055536_1000003 Ga0055536_1000003202 628
111 3300003791 Ga0055530_10001650 Ga0055530_100016502 628
112 3300003794 Ga0055531_10000138 Ga0055531_1000013825 628
113 3300005563 Ga0068855_100004876 Ga0068855_1000048763 628
114 3300009545 Ga0105237_10011868 Ga0105237_1001186810 628
115 3300009545 Ga0105237_10015806 Ga0105237_100158068 628
116 3300010375 Ga0105239_10005457 Ga0105239_1000545715 628
117 3300013100 Ga0157373_10002368 Ga0157373_100023688 628
118 3300013102 Ga0157371_10000009 Ga0157371_10000009250 628
119 3300015261 Ga0182006_1000115 Ga0182006_10001158 628
120 3300015261 Ga0182006_1000519 Ga0182006_10005199 628
121 3300017792 Ga0163161_10000608 Ga0163161_100006083 628
122 3300025292 Ga0209676_1000001 Ga0209676_1000001537 628
123 3300025298 Ga0209050_1000016 Ga0209050_1000016202 628
124 3300025304 Ga0209257_1000001 Ga0209257_1000001359 628
125 3300025914 Ga0207671_10016947 Ga0207671_100169472 628
126 3300025949 Ga0207667_10002912 Ga0207667_100029123 628
127 3300028794 Ga0307515_10047079 Ga0307515_100470794 628
128 3300031731 Ga0307405_10000018 Ga0307405_1000001870 628
129 3300033179 Ga0307507_10000015 Ga0307507_10000015199 628
130 3300048929 Ga0496126_0089887 Ga0496126_0089887_216_2126 628
131 3300001989 JGI24739J22299_10004446 JGI24739J22299_100044464 629
132 3300001990 JGI24737J22298_10001329 JGI24737J22298_100013292 629
133 3300002067 JGI24735J21928_10000006 JGI24735J21928_10000006113 629
134 3300003320 rootH2_10198926 rootH2_101989262 629
135 3300005288 Ga0065714_10012154 Ga0065714_100121543 629
136 3300005289 Ga0065704_10072579 Ga0065704_100725792 629
137 3300005289 Ga0065704_10073728 Ga0065704_100737282 629
138 3300005563 Ga0068855_100060508 Ga0068855_1000605082 629
139 3300013306 Ga0163162_10017451 Ga0163162_100174512 629
140 3300013307 Ga0157372_10000193 Ga0157372_1000019355 629
141 3300013308 Ga0157375_10085401 Ga0157375_100854012 629
142 3300025949 Ga0207667_10007408 Ga0207667_100074082 629
143 3300028786 Ga0307517_10002277 Ga0307517_1000227723 629
144 3300031507 Ga0307509_10015714 Ga0307509_100157144 629
145 3300046471 Ga0495650_0000014 Ga0495650_0000014_490132_492042 629
146 3300046492 Ga0495585_0000031 Ga0495585_0000031_49766_51676 629
147 3300046507 Ga0495606_0000020 Ga0495606_0000020_76395_78305 629
148 3300046512 Ga0495610_0001415 Ga0495610_0001415_15199_17109 629
149 3300046513 Ga0495616_0001888 Ga0495616_0001888_11500_13410 629
150 3300046558 Ga0495633_0006130 Ga0495633_0006130_5077_6987 629
151 3300046660 Ga0495625_0000009 Ga0495625_0000009_135342_137252 629
152 3300046665 Ga0495661_0001418 Ga0495661_0001418_5670_7580 629
153 3300046694 Ga0495649_0000008 Ga0495649_0000008_111838_113748 629
154 3300050493 nmdc:mga0k408_6316_c2 nmdc:mga0k408_6316_c2_1122_3032 629
155 3300053156 Ga0500622_0000010 Ga0500622_0000010_266800_268710 629
156 3300053156 Ga0500622_0000044 Ga0500622_0000044_141182_143092 629
157 iso_pu_bacteria 2896109856 2896111646 629

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07980

SusD_RagB

SusD family

353

674

0.9

PF14322

SusD-like_3

Starch-binding associating with outer membrane

48

268

0.65

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bll-assembly1.cif.gz_A structure of susd homologue bt3013 from bacteroides thetaiotaomicron 0.8497 37 629
5ck0-assembly1.cif.gz_A bt4246 0.8315 40 629
7bll-assembly1.cif.gz_A structure of susd homologue bt3013 from bacteroides thetaiotaomicron 0.8284 37 629
5ck0-assembly1.cif.gz_A bt4246 0.813 40 629
5ck1-assembly1.cif.gz_A selenomethionine bt4246 0.8115 44 629
ID Description Score Start End Superfamily
af_Q4CZA4_312_482_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7983 114 232 1.25.40.10
3qnkC00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7978 21 629 1.25.40.390
3qnkC00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7963 21 629 1.25.40.390
af_A4HUJ4_263_389_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7942 114 232 1.25.40.10
3ihvB01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7753 38 206 1.25.40.890
ID Description Score Start End GO Terms
AF-A0A519VAB7-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9927 293 629 GO:0009279
AF-A0A4Q6ACH2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9898 329 629 GO:0009279
AF-A0A519MDE2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9896 207 629 GO:0009279
AF-A0A4Q6ACH2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9865 329 629 GO:0009279
AF-A0A4V1SSI3-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9845 41 629 GO:0009279

Feature Viewer

pLDDT pTM Quality
90.75 0.89 High
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Predicted Structure (AlphaFold2)

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