F223003

General Info

Members Datasets Scaffolds Average Seq Length
155 111 155 368

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0012671|Ga0495580_0012671_4829_6067
Length 412
Sequence VETPVTLDDLRRFAVARSLFPPTTLKRALDRMGFVQADPIRAPARAQDLILRHRVRGYRAEDLERLNGNVDLGVEEDFFVNYGYVTHRLQSLMHPRSDSEVPADSPAAWHINAPAKWPAERRRQVRQLLDFVREQGEVHPRDVERRFAHGRITNYWGGSSNATTRLLEAMHYRGLLRVARRESGTRIYARHEHPPVRLDAEGMRSRIDALVDAVVGIYAPLPARSLSYLVRRLRYAAPQWRNDLRAALDRARERLAHARVADVDWYWPAREDPKRAVERGDVRLLAPFDPVVHDRDRFELLWGWVYRFEAYTPAPKRVRGYYALPLLWRDRVVGWGNLSVEDGALEADLGYVGSAPRDRVFRGELDKELDRVRAFLGLETGRRVSAGRRGRTSGSPRSRTTPTRSRRSSRRP

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
36 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
37 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
81 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
82 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
83 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
84 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
85 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
86 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
87 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
88 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
89 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
90 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
94 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
95 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
96 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
97 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
98 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
99 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
102 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
105 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
106 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
107 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
110 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
111 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.23
Rhizosphere 94.19
Stem 0
Stem Tuber 0
Unclassified 2.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10013182 3300005290 Bacteria 2678
2 Ga0070676_10016775 3300005328 Bacteria 4049
3 Ga0070670_100082462 3300005331 Unclassified 2763
4 Ga0070670_100147245 3300005331 Bacteria 2038
5 Ga0070666_10006315 3300005335 Bacteria 7290
6 Ga0070682_100278579 3300005337 Bacteria 1218
7 Ga0070689_100093622 3300005340 Bacteria 2372
8 Ga0070668_100057528 3300005347 Bacteria 3005
9 Ga0070675_100296442 3300005354 Bacteria 1424
10 Ga0070671_100002163 3300005355 Bacteria 15164
11 Ga0070673_100014687 3300005364 Bacteria 5469
12 Ga0070713_100223570 3300005436 Bacteria 1708
13 Ga0070705_100001615 3300005440 Bacteria 11809
14 Ga0070694_100010730 3300005444 Bacteria 5664
15 Ga0070708_100000147 3300005445 Bacteria 48675
16 Ga0070681_10008726 3300005458 Bacteria 9945
17 Ga0070685_10021278 3300005466 Bacteria 3524
18 Ga0070706_100000454 3300005467 Bacteria 48917
19 Ga0070706_100037047 3300005467 Bacteria 4506
20 Ga0070706_100049451 3300005467 Bacteria 3880
21 Ga0070706_100096914 3300005467 Bacteria 2739
22 Ga0070707_100094183 3300005468 Bacteria 2900
23 Ga0070698_100000807 3300005471 Bacteria 34196
24 Ga0070698_100082353 3300005471 Bacteria 3210
25 Ga0070699_100008648 3300005518 Bacteria 8825
26 Ga0070699_100018305 3300005518 Bacteria 6020
27 Ga0070699_100044941 3300005518 Bacteria 3823
28 Ga0070679_100232602 3300005530 Bacteria 1802
29 Ga0070697_100000411 3300005536 Bacteria 32999
30 Ga0070697_100004331 3300005536 Bacteria 10889
31 Ga0070697_100022300 3300005536 Bacteria 5025
32 Ga0070697_100124228 3300005536 Bacteria 2161
33 Ga0070686_100043207 3300005544 Bacteria 2827
34 Ga0070695_100003076 3300005545 Bacteria 9710
35 Ga0070695_100003865 3300005545 Bacteria 8739
36 Ga0070665_100035834 3300005548 Bacteria 4991
37 Ga0070665_100091713 3300005548 Bacteria 3043
38 Ga0070704_100025795 3300005549 Bacteria 3874
39 Ga0068854_100048094 3300005578 Bacteria 3042
40 Ga0068856_100017785 3300005614 Bacteria 6894
41 Ga0070702_100040839 3300005615 Bacteria 2598
42 Ga0068852_100002272 3300005616 Bacteria 13196
43 Ga0068859_100143825 3300005617 Bacteria 2459
44 Ga0068861_100001034 3300005719 Bacteria 17048
45 Ga0068861_100073650 3300005719 Bacteria 2654
46 Ga0068861_100155894 3300005719 Bacteria 1879
47 Ga0068863_100013836 3300005841 Bacteria 7777
48 Ga0068860_100050575 3300005843 Bacteria 3955
49 Ga0068860_100173197 3300005843 Bacteria 2085
50 Ga0081455_10005972 3300005937 Bacteria 13207
51 Ga0081455_10011442 3300005937 Bacteria 8915
52 Ga0081540_1000998 3300005983 Bacteria 25439
53 Ga0070717_10046542 3300006028 Bacteria 3550
54 Ga0070717_10121475 3300006028 Bacteria 2238
55 Ga0070712_100032438 3300006175 Bacteria 3528
56 Ga0075428_100281116 3300006844 Bacteria 1791
57 Ga0075433_10011210 3300006852 Bacteria 7214
58 Ga0075433_10113586 3300006852 Bacteria 2403
59 Ga0075434_100163160 3300006871 Bacteria 2248
60 Ga0097620_100143821 3300006931 Bacteria 2459
61 Ga0111539_10106032 3300009094 Bacteria 3297
62 Ga0114129_10014630 3300009147 Bacteria 11179
63 Ga0114129_10015062 3300009147 Bacteria 11007
64 Ga0114129_10069719 3300009147 Bacteria 4901
65 Ga0114129_10176524 3300009147 Bacteria 2910
66 Ga0114129_10628701 3300009147 Bacteria 1388
67 Ga0105243_10155390 3300009148 Bacteria 1967
68 Ga0105242_10006875 3300009176 Bacteria 8773
69 Ga0105238_10055323 3300009551 Bacteria 3983
70 Ga0105249_10002180 3300009553 Bacteria 16962
71 Ga0099796_10029042 3300010159 Bacteria 1781
72 Ga0105239_10071651 3300010375 Bacteria 3808
73 Ga0157378_10314367 3300013297 Bacteria 1520
74 Ga0157378_10381042 3300013297 Bacteria 1385
75 Ga0157378_10479853 3300013297 Bacteria 1239
76 Ga0157379_10282171 3300014968 Bacteria 1512
77 Ga0207697_10005072 3300025315 Bacteria 6168
78 Ga0207697_10072360 3300025315 Archaea 1445
79 Ga0207653_10040996 3300025885 Unclassified 1519
80 Ga0207680_10000814 3300025903 Bacteria 14699
81 Ga0207645_10003390 3300025907 Bacteria 12115
82 Ga0207645_10020202 3300025907 Bacteria 4362
83 Ga0207684_10005192 3300025910 Bacteria 12117
84 Ga0207684_10048042 3300025910 Bacteria 3620
85 Ga0207684_10085903 3300025910 Bacteria 2680
86 Ga0207654_10007485 3300025911 Bacteria 5502
87 Ga0207707_10025190 3300025912 Bacteria 5204
88 Ga0207695_10011565 3300025913 Bacteria 10677
89 Ga0207671_10022127 3300025914 Bacteria 4811
90 Ga0207693_10043428 3300025915 Bacteria 3537
91 Ga0207646_10002981 3300025922 Bacteria 19564
92 Ga0207646_10076026 3300025922 Bacteria 3001
93 Ga0207694_10034487 3300025924 Bacteria 3880
94 Ga0207650_10011095 3300025925 Bacteria 6196
95 Ga0207700_10211913 3300025928 Bacteria 1638
96 Ga0207644_10013648 3300025931 Bacteria 5421
97 Ga0207686_10008295 3300025934 Bacteria 5606
98 Ga0207711_10144132 3300025941 Bacteria 2145
99 Ga0207661_10192504 3300025944 Bacteria 1789
100 Ga0207667_10029669 3300025949 Bacteria 5929
101 Ga0207668_10243150 3300025972 Bacteria 1457
102 Ga0207708_10000808 3300026075 Bacteria 23498
103 Ga0207702_10166824 3300026078 Bacteria 2015
104 Ga0207648_10002864 3300026089 Bacteria 18253
105 Ga0207675_100000516 3300026118 Bacteria 37531
106 Ga0207675_100031551 3300026118 Bacteria 4935
107 Ga0207675_100121125 3300026118 Bacteria 2475
108 Ga0268266_10358504 3300028379 Bacteria 1372
109 Ga0268264_10173212 3300028381 Bacteria 1954
110 Ga0307515_10000089 3300028794 Bacteria 215736
111 Ga0307515_10070661 3300028794 Bacteria 4747
112 Ga0307512_10010611 3300030522 Bacteria 8771
113 Ga0265328_10033642 3300031239 Bacteria 1900
114 Ga0265320_10007880 3300031240 Bacteria 6570
115 Ga0265331_10061402 3300031250 Bacteria 1774
116 Ga0265316_10002393 3300031344 Bacteria 19533
117 Ga0265316_10029447 3300031344 Bacteria 4514
118 Ga0265314_10008322 3300031711 Bacteria 8895
119 Ga0307510_10001817 3300033180 Bacteria 23867
120 Ga0373953_0093036 3300035117 Bacteria 1263
121 Ga0373943_0014646 3300035170 Bacteria 3555
122 Ga0373927_0054623 3300035695 Bacteria 2584
123 Ga0373947_0026321 3300035725 Unclassified 3399
124 Ga0451577_0116284 3300042876 Bacteria 2395
125 Ga0451576_0081982 3300045051 Bacteria 3354
126 Ga0451576_0479194 3300045051 Bacteria 1307
127 Ga0495590_0006252 3300046457 Bacteria 4661
128 Ga0495580_0012671 3300046472 Bacteria 6466
129 Ga0495580_0082627 3300046472 Bacteria 2239
130 Ga0495580_0085102 3300046472 Bacteria 2203
131 Ga0495580_0169781 3300046472 Bacteria 1508
132 Ga0495632_0085844 3300046519 Bacteria 1497
133 Ga0495666_0039016 3300046526 Bacteria 2308
134 Ga0495665_0077384 3300046531 Bacteria 1751
135 Ga0495669_0012340 3300046684 Bacteria 3636
136 Ga0495649_0007397 3300046694 Bacteria 6701
137 Ga0495674_0040184 3300047319 Bacteria 4186
138 Ga0495674_0141541 3300047319 Bacteria 2022
139 Ga0495674_0227481 3300047319 Bacteria 1540
140 Ga0495684_0011985 3300047471 Bacteria 6685
141 Ga0495684_0062768 3300047471 Bacteria 2826
142 Ga0496100_0127765 3300048903 Bacteria 1786
143 Ga0496102_0392964 3300048905 Bacteria 1304
144 Ga0496112_0136160 3300048915 Bacteria 2426
145 Ga0496113_0163431 3300048916 Unclassified 1761
146 Ga0496115_0038387 3300048918 Bacteria 3800
147 nmdc:mga05p37_119792_c1 3300050507 Bacteria 3234
148 nmdc:mga05p37_176973_c1 3300050507 Bacteria 2598
149 nmdc:mga05p37_351983_c1 3300050507 Bacteria 1734
150 nmdc:mga05p37_55163_c1 3300050507 Bacteria 4889
151 nmdc:mga08y16_340157_c1 3300050511 Bacteria 1543
152 nmdc:mga08y16_397313_c1 3300050511 Bacteria 1411
153 nmdc:mga08x19_102071_c1 3300050514 Unclassified 1904
154 nmdc:mga0a205_89387_c1 3300050515 Bacteria 2977
155 Ga0530510_0014762 3300061734 Bacteria 5515

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005617 Ga0068859_100143825 Ga0068859_1001438253 330
2 3300006931 Ga0097620_100143821 Ga0097620_1001438211 330
3 3300005578 Ga0068854_100048094 Ga0068854_1000480942 331
4 3300025910 Ga0207684_10048042 Ga0207684_100480422 336
5 3300046472 Ga0495580_0085102 Ga0495580_0085102_838_1857 339
6 3300046526 Ga0495666_0039016 Ga0495666_0039016_849_1937 345
7 3300046684 Ga0495669_0012340 Ga0495669_0012340_889_2013 347
8 3300005337 Ga0070682_100278579 Ga0070682_1002785791 355
9 3300009176 Ga0105242_10006875 Ga0105242_100068752 355
10 3300025934 Ga0207686_10008295 Ga0207686_100082955 355
11 3300050514 nmdc:mga08x19_102071_c1 nmdc:mga08x19_102071_c1_721_1821 356
12 3300009553 Ga0105249_10002180 Ga0105249_100021803 357
13 3300031344 Ga0265316_10029447 Ga0265316_100294472 357
14 3300031711 Ga0265314_10008322 Ga0265314_100083222 357
15 3300048916 Ga0496113_0163431 Ga0496113_0163431_534_1607 357
16 3300028794 Ga0307515_10000089 Ga0307515_100000893 358
17 3300031344 Ga0265316_10002393 Ga0265316_1000239318 358
18 3300046694 Ga0495649_0007397 Ga0495649_0007397_2940_4031 358
19 3300005331 Ga0070670_100147245 Ga0070670_1001472451 359
20 3300005340 Ga0070689_100093622 Ga0070689_1000936222 359
21 3300005544 Ga0070686_100043207 Ga0070686_1000432072 359
22 3300005719 Ga0068861_100155894 Ga0068861_1001558942 359
23 3300013297 Ga0157378_10479853 Ga0157378_104798532 359
24 3300026118 Ga0207675_100121125 Ga0207675_1001211252 359
25 3300030522 Ga0307512_10010611 Ga0307512_100106113 359
26 3300033180 Ga0307510_10001817 Ga0307510_1000181722 359
27 3300009094 Ga0111539_10106032 Ga0111539_101060322 360
28 3300050511 nmdc:mga08y16_397313_c1 nmdc:mga08y16_397313_c1_139_1221 360
29 3300061734 Ga0530510_0014762 Ga0530510_0014762_3326_4417 360
30 3300005355 Ga0070671_100002163 Ga0070671_10000216310 361
31 3300025931 Ga0207644_10013648 Ga0207644_100136483 361
32 3300028794 Ga0307515_10070661 Ga0307515_100706613 361
33 3300046457 Ga0495590_0006252 Ga0495590_0006252_1283_2377 361
34 3300005466 Ga0070685_10021278 Ga0070685_100212783 362
35 3300005548 Ga0070665_100035834 Ga0070665_1000358346 362
36 3300006844 Ga0075428_100281116 Ga0075428_1002811161 362
37 3300013297 Ga0157378_10314367 Ga0157378_103143672 362
38 3300046519 Ga0495632_0085844 Ga0495632_0085844_150_1250 362
39 3300005548 Ga0070665_100091713 Ga0070665_1000917132 363
40 3300025885 Ga0207653_10040996 Ga0207653_100409961 363
41 3300050511 nmdc:mga08y16_340157_c1 nmdc:mga08y16_340157_c1_224_1393 363
42 3300005467 Ga0070706_100096914 Ga0070706_1000969142 365
43 3300025910 Ga0207684_10085903 Ga0207684_100859033 365
44 3300005328 Ga0070676_10016775 Ga0070676_100167751 366
45 3300005364 Ga0070673_100014687 Ga0070673_1000146872 366
46 3300005440 Ga0070705_100001615 Ga0070705_1000016152 366
47 3300005444 Ga0070694_100010730 Ga0070694_1000107304 366
48 3300005471 Ga0070698_100000807 Ga0070698_1000008078 366
49 3300005536 Ga0070697_100022300 Ga0070697_1000223003 366
50 3300005545 Ga0070695_100003865 Ga0070695_1000038652 366
51 3300005615 Ga0070702_100040839 Ga0070702_1000408392 366
52 3300005719 Ga0068861_100001034 Ga0068861_1000010347 366
53 3300005719 Ga0068861_100073650 Ga0068861_1000736502 366
54 3300005841 Ga0068863_100013836 Ga0068863_1000138362 366
55 3300005843 Ga0068860_100050575 Ga0068860_1000505752 366
56 3300009148 Ga0105243_10155390 Ga0105243_101553901 366
57 3300025907 Ga0207645_10003390 Ga0207645_100033907 366
58 3300025924 Ga0207694_10034487 Ga0207694_100344875 366
59 3300026075 Ga0207708_10000808 Ga0207708_100008088 366
60 3300026089 Ga0207648_10002864 Ga0207648_1000286411 366
61 3300026118 Ga0207675_100000516 Ga0207675_1000005168 366
62 3300026118 Ga0207675_100031551 Ga0207675_1000315512 366
63 3300042876 Ga0451577_0116284 Ga0451577_0116284_328_1428 366
64 3300045051 Ga0451576_0081982 Ga0451576_0081982_969_2069 366
65 3300005614 Ga0068856_100017785 Ga0068856_1000177855 367
66 3300005616 Ga0068852_100002272 Ga0068852_1000022728 367
67 3300009551 Ga0105238_10055323 Ga0105238_100553232 367
68 3300010375 Ga0105239_10071651 Ga0105239_100716512 367
69 3300025911 Ga0207654_10007485 Ga0207654_100074855 367
70 3300025913 Ga0207695_10011565 Ga0207695_100115653 367
71 3300025914 Ga0207671_10022127 Ga0207671_100221274 367
72 3300025944 Ga0207661_10192504 Ga0207661_101925043 367
73 3300025949 Ga0207667_10029669 Ga0207667_100296693 367
74 3300026078 Ga0207702_10166824 Ga0207702_101668241 367
75 3300031239 Ga0265328_10033642 Ga0265328_100336421 367
76 3300031240 Ga0265320_10007880 Ga0265320_100078806 367
77 3300031250 Ga0265331_10061402 Ga0265331_100614022 367
78 3300035117 Ga0373953_0093036 Ga0373953_0093036_64_1173 367
79 3300046472 Ga0495580_0082627 Ga0495580_0082627_789_1892 367
80 3300047319 Ga0495674_0040184 Ga0495674_0040184_1321_2424 367
81 3300047471 Ga0495684_0011985 Ga0495684_0011985_3474_4577 367
82 3300005467 Ga0070706_100000454 Ga0070706_10000045422 368
83 3300005468 Ga0070707_100094183 Ga0070707_1000941832 368
84 3300005518 Ga0070699_100018305 Ga0070699_1000183054 368
85 3300005536 Ga0070697_100000411 Ga0070697_10000041132 368
86 3300005545 Ga0070695_100003076 Ga0070695_1000030763 368
87 3300005549 Ga0070704_100025795 Ga0070704_1000257952 368
88 3300005983 Ga0081540_1000998 Ga0081540_10009983 368
89 3300006852 Ga0075433_10011210 Ga0075433_100112106 368
90 3300006852 Ga0075433_10113586 Ga0075433_101135862 368
91 3300006871 Ga0075434_100163160 Ga0075434_1001631603 368
92 3300009147 Ga0114129_10014630 Ga0114129_100146301 368
93 3300009147 Ga0114129_10015062 Ga0114129_100150622 368
94 3300025315 Ga0207697_10072360 Ga0207697_100723601 368
95 3300025922 Ga0207646_10076026 Ga0207646_100760262 368
96 3300025941 Ga0207711_10144132 Ga0207711_101441322 368
97 3300046531 Ga0495665_0077384 Ga0495665_0077384_539_1651 368
98 3300047471 Ga0495684_0062768 Ga0495684_0062768_228_1340 368
99 3300050507 nmdc:mga05p37_119792_c1 nmdc:mga05p37_119792_c1_284_1390 368
100 3300050515 nmdc:mga0a205_89387_c1 nmdc:mga0a205_89387_c1_1691_2797 368
101 3300005331 Ga0070670_100082462 Ga0070670_1000824624 369
102 3300005335 Ga0070666_10006315 Ga0070666_100063156 369
103 3300005347 Ga0070668_100057528 Ga0070668_1000575282 369
104 3300005436 Ga0070713_100223570 Ga0070713_1002235702 369
105 3300005445 Ga0070708_100000147 Ga0070708_10000014743 369
106 3300005467 Ga0070706_100037047 Ga0070706_1000370473 369
107 3300005467 Ga0070706_100049451 Ga0070706_1000494512 369
108 3300005471 Ga0070698_100082353 Ga0070698_1000823533 369
109 3300005518 Ga0070699_100008648 Ga0070699_1000086487 369
110 3300005518 Ga0070699_100044941 Ga0070699_1000449413 369
111 3300005530 Ga0070679_100232602 Ga0070679_1002326022 369
112 3300005536 Ga0070697_100004331 Ga0070697_1000043314 369
113 3300005843 Ga0068860_100173197 Ga0068860_1001731972 369
114 3300006028 Ga0070717_10046542 Ga0070717_100465422 369
115 3300009147 Ga0114129_10069719 Ga0114129_100697192 369
116 3300009147 Ga0114129_10176524 Ga0114129_101765242 369
117 3300009147 Ga0114129_10628701 Ga0114129_106287012 369
118 3300010159 Ga0099796_10029042 Ga0099796_100290421 369
119 3300013297 Ga0157378_10381042 Ga0157378_103810421 369
120 3300025903 Ga0207680_10000814 Ga0207680_1000081418 369
121 3300025910 Ga0207684_10005192 Ga0207684_100051926 369
122 3300025922 Ga0207646_10002981 Ga0207646_100029819 369
123 3300025925 Ga0207650_10011095 Ga0207650_100110955 369
124 3300025972 Ga0207668_10243150 Ga0207668_102431502 369
125 3300028381 Ga0268264_10173212 Ga0268264_101732122 369
126 3300035170 Ga0373943_0014646 Ga0373943_0014646_283_1392 369
127 3300035695 Ga0373927_0054623 Ga0373927_0054623_729_1853 369
128 3300035725 Ga0373947_0026321 Ga0373947_0026321_2264_3379 369
129 3300046472 Ga0495580_0169781 Ga0495580_0169781_206_1321 369
130 3300047319 Ga0495674_0227481 Ga0495674_0227481_43_1158 369
131 3300048915 Ga0496112_0136160 Ga0496112_0136160_651_1769 369
132 3300050507 nmdc:mga05p37_176973_c1 nmdc:mga05p37_176973_c1_958_2067 369
133 3300050507 nmdc:mga05p37_351983_c1 nmdc:mga05p37_351983_c1_613_1722 369
134 3300050507 nmdc:mga05p37_55163_c1 nmdc:mga05p37_55163_c1_1147_2256 369
135 3300045051 Ga0451576_0479194 Ga0451576_0479194_83_1195 370
136 3300028379 Ga0268266_10358504 Ga0268266_103585041 371
137 3300047319 Ga0495674_0141541 Ga0495674_0141541_424_1539 371
138 3300005536 Ga0070697_100124228 Ga0070697_1001242282 372
139 3300046472 Ga0495580_0012671 Ga0495580_0012671_4829_6067 372
140 3300005290 Ga0065712_10013182 Ga0065712_100131824 373
141 3300005354 Ga0070675_100296442 Ga0070675_1002964421 373
142 3300005458 Ga0070681_10008726 Ga0070681_100087266 373
143 3300005937 Ga0081455_10005972 Ga0081455_1000597212 373
144 3300005937 Ga0081455_10011442 Ga0081455_100114425 373
145 3300006028 Ga0070717_10121475 Ga0070717_101214752 373
146 3300006175 Ga0070712_100032438 Ga0070712_1000324382 373
147 3300014968 Ga0157379_10282171 Ga0157379_102821712 373
148 3300025315 Ga0207697_10005072 Ga0207697_100050723 373
149 3300025907 Ga0207645_10020202 Ga0207645_100202021 373
150 3300025912 Ga0207707_10025190 Ga0207707_100251906 373
151 3300025915 Ga0207693_10043428 Ga0207693_100434282 373
152 3300025928 Ga0207700_10211913 Ga0207700_102119132 373
153 3300048903 Ga0496100_0127765 Ga0496100_0127765_95_1240 373
154 3300048905 Ga0496102_0392964 Ga0496102_0392964_24_1169 373
155 3300048918 Ga0496115_0038387 Ga0496115_0038387_962_2107 373

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06224

AlkZ-like

DNA glycosylase AlkZ-like

29

375

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ooi-assembly1.cif.gz_B reduced hlyu from vibrio cholerae n16961 0.7468 112 194
3jth-assembly1.cif.gz_A crystal structure of a transcriptional regulator hlyu from vibrio vulnificus cmcp6 0.7468 111 194
7n8b-assembly1.cif.gz_BZ cycloheximide bound vacant 80s structure isolated from cbf5-d95a 0.7155 105 180
3jap-assembly1.cif.gz_Z structure of a partial yeast 48s preinitiation complex in closed conformation 0.7137 106 180
2l02-assembly1.cif.gz_B solution nmr structure of protein bt2368 from bacteroides thetaiotaomicron, northeast structural genomics consortium target btr375 0.7077 108 178
ID Description Score Start End Superfamily
af_P0C0A2_317_386_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8296 109 178 1.10.10.10
af_Q59048_168_225_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8164 110 178 1.10.10.10
af_P39360_5_75_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.809 106 179 1.10.10.10
af_Q19519_316_383_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8075 106 178 1.10.10.10
af_Q58948_3_81_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8021 111 179 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7V7WH40-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9773 1 311
AF-A0A7V7WRG1-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9732 1 343
AF-A0A0B5GUD7-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.972 3 366
AF-A0A519I1S4-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9661 1 257
AF-A0A1M7NLG2-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.966 1 367

Feature Viewer

pLDDT pTM Quality
89.79 0.89 High
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Predicted Structure (AlphaFold2)

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