F216797

General Info

Members Datasets Scaffolds Average Seq Length
153 134 306 552

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10000034|Ga0105240_10000034213
Length 563
Sequence VTARVTWRPADGLILEPNALRAAKEIKHSLALTAGPGAGKTEMLAQRADFLLRTNSCPYPRRILAISFKVDASANLKQRVRRRCGTDLSSRFDSYTFHAFAKRIIDRFRPVLTGRDALDVDYQIGDRLVPRRQIEFGDLVRLATQILQTSNIARNAVRCTYSDVFLDEFQDCTDQQYALLKVAFQGTDTRLTAVGDTKQKIMGWAGALDGIFLTFANDFSAKPLNMYRNFRSRPRLLRMQNDIIRVMDPTSVMPKRQLIGQQGIIDIQRFNNDIAESEFLADAIEGWIEGESVPSADIAVLVSKQAELYAERLMEKLALRGIPYRNEQQIQDISTEPAARLIVDYLLCLYGKREPQAWTRLANLLNPYADDEDQASARQNLQRLIAEQRGRVGEDENANQSVPAWWQFVRAFLRAIGINALVALSHDYESRARLNEVIRDTKARIEELLKLETDLPKALKRFSGDQAVRILTIHKSKGLEFDSVVVLGVERQAFWGNVDAERCAYFVGISRAKRRLLLTVCDWRETPRAATRRWDNRRTEHEEFIGYALPHLGAPRSRKRRAI

Samples

Sample ID Description Type Environment
1 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
2 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
3 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
4 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
5 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
6 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
16 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
17 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
18 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
19 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
20 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
23 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
24 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
25 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
26 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
27 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
28 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
43 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
44 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
45 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
46 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
47 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
48 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
51 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
52 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
56 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
57 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
58 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
59 3300042124 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_082716_2423 Metagenome Rhizosphere
60 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
61 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
62 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
63 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
64 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
67 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
68 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
69 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
70 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
71 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
72 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
73 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
74 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
75 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
76 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
77 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
78 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
79 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
80 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
81 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
82 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
83 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
84 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
85 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
86 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
89 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
90 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
91 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
92 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
95 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
96 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
109 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
110 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
111 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
112 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
113 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
114 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
115 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
116 2547132416 Enterobacter sp. MR1 Isolate Rhizoplane
117 2600255389 Pseudomonas sp. NFPP33 Isolate Rhizoplane
118 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
119 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
120 2713897149 Pseudomonas fluorescens SF4c Isolate Rhizosphere
121 2856320880 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Isolate Nodule
122 2874168670 Mesorhizobium kowhaii Ach-343 Isolate Nodule
123 2874620515 Bradyrhizobium nanningense CCBAU 53390 Isolate Unclassified
124 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
125 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
126 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
127 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
128 2957422303 Sinorhizobium meliloti USDA1497 Isolate Nodule
129 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
130 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
131 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
132 2977986579 Mesorhizobium intechi BD68 Isolate Unclassified
133 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
134 3005452660 Rhizobium grahamii BG7 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.58
Metatranscriptomes 0
Isolates 12.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.03
Nodule 6.54
Rhizoplane 2.61
Rhizosphere 66.01
Stem 0
Stem Tuber 0
Unclassified 1.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105240_10000034 3300009093 Bacteria 278179
2 Ga0055538_1000002 3300003751 Bacteria 999437
3 Ga0055539_1000002 3300003752 Bacteria 999437
4 Ga0055533_1000004 3300003756 Bacteria 999437
5 Ga0055525_1000002 3300003759 Bacteria 999437
6 Ga0055541_1000002 3300003841 Bacteria 896405
7 Ga0065165_1000922 3300005262 Bacteria 37708
8 Ga0065714_10064447 3300005288 Bacteria 83763
9 Ga0065714_10064576 3300005288 Bacteria 33030
10 Ga0070666_10012361 3300005335 Bacteria 5382
11 Ga0070659_100005449 3300005366 Bacteria 9141
12 Ga0070667_100003210 3300005367 Bacteria 14005
13 Ga0070711_100052925 3300005439 Bacteria 2796
14 Ga0068862_100017015 3300005844 Bacteria 6050
15 Ga0075367_10004221 3300006178 Bacteria 6975
16 Ga0075369_10007737 3300006186 Bacteria 4107
17 Ga0105251_10005313 3300009011 Bacteria 8467
18 Ga0105244_10001657 3300009036 Bacteria 17618
19 Ga0105244_10022407 3300009036 Bacteria 3476
20 Ga0105250_10001616 3300009092 Bacteria 12052
21 Ga0105247_10000030 3300009101 Bacteria 187803
22 Ga0105243_10048556 3300009148 Bacteria 3346
23 Ga0105239_10111432 3300010375 Bacteria 3034
24 Ga0157375_10001972 3300013308 Bacteria 17699
25 Ga0182008_10001573 3300014497 Bacteria 15186
26 Ga0182008_10002775 3300014497 Bacteria 10856
27 Ga0182006_1019154 3300015261 Bacteria 2885
28 Ga0182007_10001218 3300015262 Bacteria 13949
29 Ga0182005_1000111 3300015265 Bacteria 58282
30 Ga0183360_10001 3300015689 Bacteria 3943671
31 Ga0209784_100002 3300025224 Bacteria 1753105
32 Ga0209566_100003 3300025225 Bacteria 1753105
33 Ga0209674_100004 3300025226 Bacteria 1753105
34 Ga0209674_100917 3300025226 Bacteria 9453
35 Ga0209563_100006 3300025230 Bacteria 1753105
36 Ga0209677_100003 3300025253 Bacteria 1753105
37 Ga0209148_1000370 3300025254 Bacteria 55433
38 Ga0207696_1007237 3300025711 Bacteria 4363
39 Ga0207655_1001207 3300025728 Bacteria 24924
40 Ga0207713_1002887 3300025735 Bacteria 12043
41 Ga0207710_10000068 3300025900 Bacteria 152636
42 Ga0207680_10002590 3300025903 Bacteria 8435
43 Ga0207695_10000101 3300025913 Bacteria 258504
44 Ga0207693_10053093 3300025915 Unclassified 3180
45 Ga0207690_10008914 3300025932 Bacteria 5955
46 Ga0209281_1001109 3300027111 Bacteria 19528
47 Ga0209281_1006147 3300027111 Bacteria 3180
48 Ga0209371_1002651 3300027312 Bacteria 9753
49 Ga0268256_1002349 3300030500 Bacteria 9753
50 Ga0307408_100006064 3300031548 Bacteria 8038
51 Ga0265313_10032957 3300031595 Bacteria 2638
52 Ga0307516_10001010 3300031730 Bacteria 38997
53 Ga0307405_10000614 3300031731 Bacteria 13718
54 Ga0307406_10029069 3300031901 Bacteria 3344
55 Ga0307412_10004073 3300031911 Bacteria 8140
56 Ga0307510_10005140 3300033180 Bacteria 15550
57 Ga0373935_0000004 3300035692 Bacteria 143479
58 Ga0373947_0000230 3300035725 Bacteria 31337
59 Ga0373925_0005747 3300037068 Bacteria 9218
60 Ga0439447_000045 3300041407 Bacteria 42665
61 Ga0439432_000244 3300042006 Bacteria 19546
62 Ga0439452_000126 3300042010 Bacteria 59072
63 Ga0450920_000739 3300042122 Bacteria 5268
64 Ga0450922_000001 3300042124 Bacteria 54583
65 Ga0450906_003159 3300042145 Bacteria 3562
66 Ga0450907_001183 3300042146 Bacteria 5904
67 Ga0450910_000091 3300042147 Bacteria 9227
68 Ga0450908_000864 3300042184 Bacteria 5849
69 Ga0450918_000239 3300042531 Bacteria 12533
70 Ga0495638_0002193 3300046460 Bacteria 16321
71 Ga0495638_0026446 3300046460 Bacteria 3760
72 Ga0495653_0000008 3300046463 Bacteria 307868
73 Ga0495584_0027978 3300046491 Bacteria 2856
74 Ga0495607_0000273 3300046501 Bacteria 55633
75 Ga0495583_0004608 3300046506 Bacteria 9753
76 Ga0495610_0000286 3300046512 Bacteria 52853
77 Ga0495610_0013218 3300046512 Bacteria 4916
78 Ga0495616_0000558 3300046513 Bacteria 28195
79 Ga0495616_0000586 3300046513 Bacteria 27352
80 Ga0495616_0025588 3300046513 Bacteria 3151
81 Ga0495632_0001067 3300046519 Bacteria 23492
82 Ga0495632_0001761 3300046519 Bacteria 17520
83 Ga0495632_0007061 3300046519 Bacteria 7114
84 Ga0495644_0000068 3300046523 Bacteria 51396
85 Ga0495654_0002045 3300046530 Bacteria 13236
86 Ga0495609_0001782 3300046538 Bacteria 13826
87 Ga0495597_0007180 3300046542 Bacteria 5684
88 Ga0495625_0000648 3300046660 Bacteria 50041
89 Ga0495625_0004602 3300046660 Bacteria 12973
90 Ga0495625_0024627 3300046660 Unclassified 4578
91 Ga0495661_0005618 3300046665 Bacteria 8900
92 Ga0495671_0003198 3300046692 Bacteria 10176
93 Ga0495649_0001777 3300046694 Bacteria 15902
94 Ga0495660_0010007 3300046810 Bacteria 5517
95 Ga0495687_000674 3300047443 Bacteria 38823
96 Ga0495687_002009 3300047443 Bacteria 17245
97 Ga0495675_0001628 3300047444 Bacteria 13498
98 Ga0495681_0000009 3300047470 Bacteria 205224
99 Ga0495681_0004933 3300047470 Bacteria 9007
100 Ga0495686_0000026 3300047472 Bacteria 383637
101 Ga0495686_0002452 3300047472 Bacteria 17479
102 Ga0495626_0000189 3300048091 Bacteria 74620
103 Ga0496112_0000553 3300048915 Bacteria 25674
104 Ga0496113_0000018 3300048916 Bacteria 73689
105 Ga0496116_0002853 3300048919 Bacteria 17722
106 Ga0496120_0006340 3300048923 Bacteria 9103
107 Ga0496121_0010074 3300048924 Bacteria 10726
108 Ga0496122_0002033 3300048925 Bacteria 30019
109 Ga0496123_0000564 3300048926 Bacteria 63390
110 Ga0496123_0023019 3300048926 Bacteria 4783
111 Ga0496125_0103604 3300048928 Bacteria 2087
112 Ga0495678_000848 3300049459 Bacteria 27312
113 Ga0501031_0000009 3300049568 Bacteria 155116
114 Ga0501032_0000017 3300049569 Bacteria 158303
115 Ga0501033_0000029 3300049570 Bacteria 158294
116 Ga0501033_0000180 3300049570 Bacteria 60526
117 Ga0501034_0000102 3300049571 Bacteria 158302
118 Ga0501036_0000011 3300049572 Bacteria 158302
119 Ga0501037_0000015 3300049573 Bacteria 161311
120 Ga0501038_0000016 3300049574 Bacteria 159150
121 Ga0501039_0000023 3300049575 Bacteria 158026
122 Ga0501047_0003203 3300049581 Bacteria 15516
123 Ga0501070_0061123 3300049586 Bacteria 3122
124 Ga0501035_0000038 3300049822 Bacteria 158818
125 Ga0501044_0000046 3300049823 Bacteria 146812
126 nmdc:mga06z11_10220_c1 3300050494 Bacteria 3986
127 nmdc:mga0sz30_1113_c2 3300050516 Bacteria 6040
128 Ga0500555_007057 3300053103 Bacteria 3194
129 Ga0500608_000569 3300053122 Bacteria 13771
130 Ga0500559_0000267 3300053136 Bacteria 40699
131 Ga0500622_0001644 3300053156 Bacteria 17473
132 Ga0500622_0046568 3300053156 Bacteria 2241
133 Ga0500633_0000731 3300053160 Bacteria 5579
134 Ga0590071_002330 3300059421 Bacteria 4796
135 2548652440 2547132416 Bacteria 4633861
136 2602011336 2600255389 Bacteria 5275336
137 2643831519 2643221562 Bacteria 4048635
138 2652977776 2651869818 Bacteria 5864031
139 2715756769 2713897149 Bacteria 6506249
140 2856326877 2856320880 Bacteria 7263508
141 2874173282 2874168670 Bacteria 8062617
142 2874622792 2874620515 Bacteria 8290088
143 2916019034 2916014648 Bacteria 6946486
144 2919129556 2919125081 Bacteria 5385106
145 2919496842 2919493220 Bacteria 4598500
146 2937003760 2937002841 Bacteria 6934057
147 2957422403 2957422303 Bacteria 7172205
148 2957491063 2957484790 Bacteria 6703082
149 2964678066 2964670856 Bacteria 6851364
150 2967737050 2967735183 Bacteria 6827012
151 2977988268 2977986579 Bacteria 6581278
152 2979103075 2979100975 Bacteria 5423623
153 3005457938 3005452660 Bacteria 5889319
154 Ga0105240_10000034
155 Ga0055538_1000002
156 Ga0055539_1000002
157 Ga0055533_1000004
158 Ga0055525_1000002
159 Ga0055541_1000002
160 Ga0065165_1000922
161 Ga0065714_10064447
162 Ga0065714_10064576
163 Ga0070666_10012361
164 Ga0070659_100005449
165 Ga0070667_100003210
166 Ga0070711_100052925
167 Ga0068862_100017015
168 Ga0075367_10004221
169 Ga0075369_10007737
170 Ga0105251_10005313
171 Ga0105244_10001657
172 Ga0105244_10022407
173 Ga0105250_10001616
174 Ga0105247_10000030
175 Ga0105243_10048556
176 Ga0105239_10111432
177 Ga0157375_10001972
178 Ga0182008_10001573
179 Ga0182008_10002775
180 Ga0182006_1019154
181 Ga0182007_10001218
182 Ga0182005_1000111
183 Ga0183360_10001
184 Ga0209784_100002
185 Ga0209566_100003
186 Ga0209674_100004
187 Ga0209674_100917
188 Ga0209563_100006
189 Ga0209677_100003
190 Ga0209148_1000370
191 Ga0207696_1007237
192 Ga0207655_1001207
193 Ga0207713_1002887
194 Ga0207710_10000068
195 Ga0207680_10002590
196 Ga0207695_10000101
197 Ga0207693_10053093
198 Ga0207690_10008914
199 Ga0209281_1001109
200 Ga0209281_1006147
201 Ga0209371_1002651
202 Ga0268256_1002349
203 Ga0307408_100006064
204 Ga0265313_10032957
205 Ga0307516_10001010
206 Ga0307405_10000614
207 Ga0307406_10029069
208 Ga0307412_10004073
209 Ga0307510_10005140
210 Ga0373935_0000004
211 Ga0373947_0000230
212 Ga0373925_0005747
213 Ga0439447_000045
214 Ga0439432_000244
215 Ga0439452_000126
216 Ga0450920_000739
217 Ga0450922_000001
218 Ga0450906_003159
219 Ga0450907_001183
220 Ga0450910_000091
221 Ga0450908_000864
222 Ga0450918_000239
223 Ga0495638_0002193
224 Ga0495638_0026446
225 Ga0495653_0000008
226 Ga0495584_0027978
227 Ga0495607_0000273
228 Ga0495583_0004608
229 Ga0495610_0000286
230 Ga0495610_0013218
231 Ga0495616_0000558
232 Ga0495616_0000586
233 Ga0495616_0025588
234 Ga0495632_0001067
235 Ga0495632_0001761
236 Ga0495632_0007061
237 Ga0495644_0000068
238 Ga0495654_0002045
239 Ga0495609_0001782
240 Ga0495597_0007180
241 Ga0495625_0000648
242 Ga0495625_0004602
243 Ga0495625_0024627
244 Ga0495661_0005618
245 Ga0495671_0003198
246 Ga0495649_0001777
247 Ga0495660_0010007
248 Ga0495687_000674
249 Ga0495687_002009
250 Ga0495675_0001628
251 Ga0495681_0000009
252 Ga0495681_0004933
253 Ga0495686_0000026
254 Ga0495686_0002452
255 Ga0495626_0000189
256 Ga0496112_0000553
257 Ga0496113_0000018
258 Ga0496116_0002853
259 Ga0496120_0006340
260 Ga0496121_0010074
261 Ga0496122_0002033
262 Ga0496123_0000564
263 Ga0496123_0023019
264 Ga0496125_0103604
265 Ga0495678_000848
266 Ga0501031_0000009
267 Ga0501032_0000017
268 Ga0501033_0000029
269 Ga0501033_0000180
270 Ga0501034_0000102
271 Ga0501036_0000011
272 Ga0501037_0000015
273 Ga0501038_0000016
274 Ga0501039_0000023
275 Ga0501047_0003203
276 Ga0501070_0061123
277 Ga0501035_0000038
278 Ga0501044_0000046
279 nmdc:mga06z11_10220_c1
280 nmdc:mga0sz30_1113_c2
281 Ga0500555_007057
282 Ga0500608_000569
283 Ga0500559_0000267
284 Ga0500622_0001644
285 Ga0500622_0046568
286 Ga0500633_0000731
287 Ga0590071_002330
288 2548652440
289 2602011336
290 2643831519
291 2652977776
292 2715756769
293 2856326877
294 2874173282
295 2874622792
296 2916019034
297 2919129556
298 2919496842
299 2937003760
300 2957422403
301 2957491063
302 2964678066
303 2967737050
304 2977988268
305 2979103075
306 3005457938

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00580

UvrD-helicase

UvrD/REP helicase N-terminal domain

114

220

0.92

PF13538

UvrD_C_2

UvrD-like helicase C-terminal domain

467

519

0.92

PF00580

UvrD-helicase

UvrD/REP helicase N-terminal domain

15

126

0.91

PF13245

AAA_19

AAA domain

18

205

0.84

PF13361

UvrD_C

UvrD-like helicase C-terminal domain

224

375

0.84

PF13361

UvrD_C

UvrD-like helicase C-terminal domain

380

522

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
1qhh-assembly1.cif.gz_A structure of dna helicase with adpnp 0.8911 15 107
3dmn-assembly1.cif.gz_A the crystal structure of the c-terminal domain of a possilbe dna helicase from lactobacillus plantarun wcfs1 0.7659 230 523
6vsx-assembly1.cif.gz_A x-ray crystal structure of the c-terminal domain of bacillus subtilis rna polymerase binding helicase held 0.7637 234 523
3dmn-assembly1.cif.gz_A the crystal structure of the c-terminal domain of a possilbe dna helicase from lactobacillus plantarun wcfs1 0.6808 230 523
6vsx-assembly1.cif.gz_A x-ray crystal structure of the c-terminal domain of bacillus subtilis rna polymerase binding helicase held 0.6763 234 523
ID Description Score Start End Superfamily
1qhhA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8911 15 107 3.40.50.300
af_A0A0R0HRY9_103_219_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8783 41 107 3.40.50.300
2is1A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8492 18 227 3.40.50.300
1uaaB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8379 14 228 3.40.50.300
2pjrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8315 14 227 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A330D680-F1-model_v4 deleted 0.9915 1 185
AF-A0A330D680-F1-model_v4 deleted 0.9809 1 185
AF-K6T6Q8-F1-model_v4 DNA/RNA helicase, superfamily I 0.9328 2 198 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0009378
GO:0016787
GO:0036121
GO:0061749
GO:1990518
AF-F3CF27-F1-model_v4 DNA 3'-5' helicase II 0.8936 11 129 GO:0000725
GO:0003677
GO:0005524
GO:0009378
GO:0016787
GO:0036121
GO:0061749
GO:1990518
AF-A0A7V4S1G0-F1-model_v4 UvrD-like helicase ATP-binding domain-containing protein 0.864 15 198 GO:0003677
GO:0003678
GO:0005524
GO:0016787

Map