F215278

General Info

Members Datasets Scaffolds Average Seq Length
152 119 304 287

Family's Representative Sequence

Representative Sequence 3300046660|Ga0495625_0064037|Ga0495625_0064037_1073_2089
Length 338
Sequence MGSILRGRRDGRNDEHPTFPAIGAQVEGRTTDPIVAPPFRTYQPVGNVPGMTTALPERAGRRCHNVLNPLHSTHYFSPDLAEQLAGVGVTDPRAAYFAVRAAAMGPVGAGTVTATFYNFRHDLVALHVPEVWRTASPEVVLAARARAVDATLRRLLGDEMLASKEVAEAAELALRAAEACTRTARPLYAAHADLPVPGEPHLALWHAATLLREHRGDGHLAALLDAELDPLEALVSHTATGKGMAPRWVLGTRGWAREDWDAAVDRLRGRGLLNAEGELTDVGVALRKEIESRTDRLDAAPYEHLGAPGVERLTELATGLLMAAMAAGAFPEGMIGKN

Samples

Sample ID Description Type Environment
1 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
4 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
5 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
6 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
7 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
8 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
9 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
10 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
11 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
12 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
13 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
14 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
15 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
16 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
17 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
18 3300042132 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_070716_133 Metagenome Rhizosphere
19 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
20 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
21 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
22 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
23 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
24 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
25 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
26 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
27 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
28 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
29 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
30 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
31 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
32 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
33 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
34 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
35 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
36 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
37 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
38 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
39 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
40 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
41 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
42 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
43 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
44 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
45 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
46 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
47 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
48 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
49 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
50 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
51 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
52 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
53 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
54 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
55 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
56 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
58 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
61 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
67 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
69 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
70 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
71 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
72 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
73 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
74 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
75 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
76 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
77 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
78 2643221647 Streptomyces sp. Root369 Isolate Unclassified
79 2643221670 Streptomyces sp. Root431 Isolate Unclassified
80 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
81 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
82 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
83 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
84 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
85 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
86 2808606448 Streptomyces sp. 193411 Isolate Unclassified
87 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
88 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
89 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
90 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
91 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
92 2867369537 Streptomyces sp. Z26 Isolate Unclassified
93 2867475112 Streptomyces sp. TM32 Isolate Unclassified
94 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
95 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
96 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
97 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
98 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
99 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
100 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
101 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
102 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
103 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
104 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
105 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
106 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
107 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
108 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
109 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
110 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
111 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
112 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
113 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
114 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
115 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
116 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
117 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
118 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
119 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 67.11
Metatranscriptomes 0
Isolates 32.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.29
Nodule 1.32
Rhizoplane 1.32
Rhizosphere 72.37
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495625_0064037 3300046660 Bacteria 2595
2 rootL2_10037411 3300003322 Bacteria 1632
3 Ga0070685_10035317 3300005466 Bacteria 2819
4 Ga0105250_10120967 3300009092 Bacteria 1076
5 Ga0157375_10407612 3300013308 Bacteria 1526
6 Ga0213875_10180547 3300021388 Bacteria 991
7 Ga0209758_1006018 3300025297 Bacteria 8961
8 Ga0207426_1001702 3300025302 Bacteria 16910
9 Ga0307515_10236576 3300028794 Bacteria 1606
10 Ga0307511_10167684 3300030521 Bacteria 1215
11 Ga0307509_10091524 3300031507 Bacteria 3112
12 Ga0307514_10066984 3300031649 Bacteria 2712
13 Ga0307514_10086167 3300031649 Bacteria 2306
14 Ga0307516_10002626 3300031730 Bacteria 23819
15 Ga0307516_10020277 3300031730 Bacteria 6870
16 Ga0307518_10215246 3300031838 Bacteria 1260
17 Ga0307416_100593792 3300032002 Bacteria 1186
18 Ga0373956_0005036 3300035119 Bacteria 5294
19 Ga0436364_1179377 3300037853 Bacteria 13192
20 Ga0450895_001696 3300042132 Bacteria 1563
21 Ga0466972_0012097 3300044658 Bacteria 4335
22 Ga0466972_0029107 3300044658 Bacteria 2721
23 Ga0466961_0048908 3300044693 Bacteria 2703
24 Ga0466963_0062327 3300044694 Bacteria 2494
25 Ga0466971_0064689 3300044719 Bacteria 1656
26 Ga0466968_0090311 3300044735 Bacteria 1356
27 Ga0466959_0026202 3300045049 Bacteria 4322
28 Ga0466959_0143380 3300045049 Bacteria 1687
29 Ga0466958_0193903 3300045836 Bacteria 1292
30 Ga0495603_0000817 3300046455 Bacteria 17867
31 Ga0495603_0105870 3300046455 Bacteria 1641
32 Ga0495603_0308537 3300046455 Bacteria 909
33 Ga0495629_0000446 3300046459 Bacteria 34452
34 Ga0495629_0026758 3300046459 Bacteria 4096
35 Ga0495629_0380372 3300046459 Bacteria 961
36 Ga0495580_0189698 3300046472 Bacteria 1418
37 Ga0495662_0006905 3300046476 Bacteria 5638
38 Ga0495662_0083729 3300046476 Bacteria 1552
39 Ga0495585_0019985 3300046492 Bacteria 3853
40 Ga0495594_0007438 3300046499 Bacteria 5634
41 Ga0495594_0019218 3300046499 Bacteria 3629
42 Ga0495594_0186103 3300046499 Bacteria 1182
43 Ga0495607_0041983 3300046501 Bacteria 2714
44 Ga0495608_0120835 3300046511 Bacteria 1680
45 Ga0495620_0016648 3300046515 Bacteria 3683
46 Ga0495643_0006932 3300046522 Bacteria 7371
47 Ga0495642_0082579 3300046528 Bacteria 1355
48 Ga0495597_0099254 3300046542 Bacteria 1229
49 Ga0495622_0096065 3300046557 Bacteria 1360
50 Ga0495668_0016544 3300046616 Bacteria 4287
51 Ga0495588_0009355 3300046674 Bacteria 4527
52 Ga0495657_0006976 3300046675 Bacteria 8763
53 Ga0495657_0019006 3300046675 Bacteria 4964
54 Ga0495599_0009243 3300046678 Bacteria 6016
55 Ga0495613_0004385 3300046689 Bacteria 10559
56 Ga0495613_0004766 3300046689 Bacteria 10177
57 Ga0495613_0036761 3300046689 Bacteria 3631
58 Ga0495624_0005192 3300046690 Bacteria 9410
59 Ga0495660_0037449 3300046810 Bacteria 2701
60 Ga0495604_0011068 3300047317 Bacteria 7160
61 Ga0495604_0205781 3300047317 Bacteria 1362
62 Ga0495636_0107239 3300047318 Bacteria 1226
63 Ga0495636_0148842 3300047318 Bacteria 1049
64 Ga0495676_0001806 3300047321 Bacteria 18736
65 Ga0495676_0007064 3300047321 Bacteria 10299
66 Ga0495676_0012824 3300047321 Bacteria 7537
67 Ga0495676_0013340 3300047321 Bacteria 7381
68 Ga0495687_002292 3300047443 Bacteria 15648
69 Ga0495687_014426 3300047443 Bacteria 4069
70 Ga0495685_013272 3300047447 Bacteria 2795
71 Ga0495685_041003 3300047447 Bacteria 1582
72 Ga0495686_0135602 3300047472 Bacteria 1456
73 Ga0495593_0025116 3300047673 Bacteria 3297
74 Ga0495593_0053242 3300047673 Bacteria 2136
75 Ga0495614_0000816 3300048089 Bacteria 13163
76 Ga0495614_0025337 3300048089 Bacteria 2558
77 Ga0496109_0368997 3300048912 Bacteria 1356
78 Ga0501032_0003827 3300049569 Bacteria 11432
79 Ga0501033_0074220 3300049570 Bacteria 2497
80 Ga0501033_0098305 3300049570 Bacteria 2137
81 Ga0501034_0112606 3300049571 Bacteria 2711
82 Ga0501034_0256682 3300049571 Bacteria 1691
83 Ga0501036_0081333 3300049572 Bacteria 2737
84 Ga0501037_0013089 3300049573 Bacteria 6117
85 Ga0501037_0055758 3300049573 Bacteria 2889
86 Ga0501037_0112647 3300049573 Bacteria 1959
87 Ga0501038_0092357 3300049574 Bacteria 2534
88 Ga0501039_0342716 3300049575 Bacteria 1174
89 Ga0501043_0027629 3300049579 Bacteria 4454
90 Ga0501043_0061462 3300049579 Bacteria 2950
91 Ga0501046_0015690 3300049580 Bacteria 6360
92 Ga0501047_0032450 3300049581 Bacteria 5040
93 Ga0501047_0062251 3300049581 Bacteria 3599
94 Ga0501048_0014812 3300049582 Bacteria 5767
95 Ga0501048_0115304 3300049582 Bacteria 1898
96 Ga0501070_0014244 3300049586 Bacteria 6692
97 Ga0501035_0324730 3300049822 Bacteria 1292
98 Ga0501044_0068702 3300049823 Bacteria 3609
99 Ga0501044_0097526 3300049823 Bacteria 2960
100 nmdc:mga07m45_61379_c1 3300050496 Bacteria 2129
101 Ga0500600_0064282 3300053149 Bacteria 2034
102 Ga0500637_0037619 3300053178 Bacteria 2722
103 2547412158 2547132111 Bacteria 8013147
104 2554260836 2554235005 Bacteria 6457341
105 2585301954 2582581312 Bacteria 7308206
106 2585304057 2582581313 Bacteria 10042643
107 2616698759 2616644814 Bacteria 11555299
108 2616698987 2616644814 Bacteria 11555299
109 2643946110 2643221587 Bacteria 7586415
110 2644263819 2643221647 Bacteria 10741251
111 2644387884 2643221670 Bacteria 6497041
112 2644432899 2643221677 Bacteria 7584031
113 2644438974 2643221678 Bacteria 9540101
114 2644440813 2643221678 Bacteria 9540101
115 2784591915 2784132148 Bacteria 8627943
116 2785339802 2784746763 Bacteria 9783172
117 2793979768 2791355406 Bacteria 11364898
118 2804849117 2802429296 Bacteria 7227771
119 2809235525 2808606448 Bacteria 8656184
120 2811843241 2808606982 Bacteria 7791042
121 2812354427 2811994879 Bacteria 9313447
122 2862283092 2862281513 Bacteria 9621493
123 2862393016 2862382967 Bacteria 10317375
124 2863410218 2863404153 Bacteria 9672205
125 2867374883 2867369537 Bacteria 6501581
126 2867476043 2867475112 Bacteria 6909112
127 2873152667 2873151551 Bacteria 8625867
128 2877677760 2877676314 Bacteria 9512378
129 2912764070 2912757875 Bacteria 7940295
130 2918507658 2918501144 Bacteria 8668083
131 2919472822 2919468124 Bacteria 9133025
132 2946071275 2946064051 Bacteria 8957905
133 2954693342 2954691527 Bacteria 10720516
134 2954708435 2954701450 Bacteria 10834262
135 2990063422 2990059506 Bacteria 9321252
136 2990090681 2990088156 Bacteria 6657676
137 2997603675 2997600082 Bacteria 9896405
138 3006429088 3006425503 Bacteria 6491253
139 3006486705 3006486233 Bacteria 8157040
140 3006494763 3006493962 Bacteria 8825450
141 8008564213 8008558824 Bacteria 10610750
142 8023631432 8023623736 Bacteria 8593882
143 8025416369 8025413630 Bacteria 7014048
144 8025481935 8025478263 Bacteria 8209203
145 8047895056 8047893842 Bacteria 11723082
146 8048136277 8048127548 Bacteria 11053136
147 8048363992 8048356638 Bacteria 11044339
148 8048372083 8048369669 Bacteria 11666822
149 8048381017 8048379754 Bacteria 11877923
150 8048409661 8048406513 Bacteria 8936924
151 8056452815 8056447290 Bacteria 7680491
152 8056669484 8056667051 Bacteria 6953971
153 Ga0495625_0064037
154 rootL2_10037411
155 Ga0070685_10035317
156 Ga0105250_10120967
157 Ga0157375_10407612
158 Ga0213875_10180547
159 Ga0209758_1006018
160 Ga0207426_1001702
161 Ga0307515_10236576
162 Ga0307511_10167684
163 Ga0307509_10091524
164 Ga0307514_10066984
165 Ga0307514_10086167
166 Ga0307516_10002626
167 Ga0307516_10020277
168 Ga0307518_10215246
169 Ga0307416_100593792
170 Ga0373956_0005036
171 Ga0436364_1179377
172 Ga0450895_001696
173 Ga0466972_0012097
174 Ga0466972_0029107
175 Ga0466961_0048908
176 Ga0466963_0062327
177 Ga0466971_0064689
178 Ga0466968_0090311
179 Ga0466959_0026202
180 Ga0466959_0143380
181 Ga0466958_0193903
182 Ga0495603_0000817
183 Ga0495603_0105870
184 Ga0495603_0308537
185 Ga0495629_0000446
186 Ga0495629_0026758
187 Ga0495629_0380372
188 Ga0495580_0189698
189 Ga0495662_0006905
190 Ga0495662_0083729
191 Ga0495585_0019985
192 Ga0495594_0007438
193 Ga0495594_0019218
194 Ga0495594_0186103
195 Ga0495607_0041983
196 Ga0495608_0120835
197 Ga0495620_0016648
198 Ga0495643_0006932
199 Ga0495642_0082579
200 Ga0495597_0099254
201 Ga0495622_0096065
202 Ga0495668_0016544
203 Ga0495588_0009355
204 Ga0495657_0006976
205 Ga0495657_0019006
206 Ga0495599_0009243
207 Ga0495613_0004385
208 Ga0495613_0004766
209 Ga0495613_0036761
210 Ga0495624_0005192
211 Ga0495660_0037449
212 Ga0495604_0011068
213 Ga0495604_0205781
214 Ga0495636_0107239
215 Ga0495636_0148842
216 Ga0495676_0001806
217 Ga0495676_0007064
218 Ga0495676_0012824
219 Ga0495676_0013340
220 Ga0495687_002292
221 Ga0495687_014426
222 Ga0495685_013272
223 Ga0495685_041003
224 Ga0495686_0135602
225 Ga0495593_0025116
226 Ga0495593_0053242
227 Ga0495614_0000816
228 Ga0495614_0025337
229 Ga0496109_0368997
230 Ga0501032_0003827
231 Ga0501033_0074220
232 Ga0501033_0098305
233 Ga0501034_0112606
234 Ga0501034_0256682
235 Ga0501036_0081333
236 Ga0501037_0013089
237 Ga0501037_0055758
238 Ga0501037_0112647
239 Ga0501038_0092357
240 Ga0501039_0342716
241 Ga0501043_0027629
242 Ga0501043_0061462
243 Ga0501046_0015690
244 Ga0501047_0032450
245 Ga0501047_0062251
246 Ga0501048_0014812
247 Ga0501048_0115304
248 Ga0501070_0014244
249 Ga0501035_0324730
250 Ga0501044_0068702
251 Ga0501044_0097526
252 nmdc:mga07m45_61379_c1
253 Ga0500600_0064282
254 Ga0500637_0037619
255 2547412158
256 2554260836
257 2585301954
258 2585304057
259 2616698759
260 2616698987
261 2643946110
262 2644263819
263 2644387884
264 2644432899
265 2644438974
266 2644440813
267 2784591915
268 2785339802
269 2793979768
270 2804849117
271 2809235525
272 2811843241
273 2812354427
274 2862283092
275 2862393016
276 2863410218
277 2867374883
278 2867476043
279 2873152667
280 2877677760
281 2912764070
282 2918507658
283 2919472822
284 2946071275
285 2954693342
286 2954708435
287 2990063422
288 2990090681
289 2997603675
290 3006429088
291 3006486705
292 3006494763
293 8008564213
294 8023631432
295 8025416369
296 8025481935
297 8047895056
298 8048136277
299 8048363992
300 8048372083
301 8048381017
302 8048409661
303 8056452815
304 8056669484

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21863

HTH_67

Helix-turn-helix family

60

331

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
3kp5-assembly1.cif.gz_A staphylococcus epidermidis tcar in complex with kanamycin 0.7528 170 247
2a61-assembly2.cif.gz_D the crystal structure of transcriptional regulator tm0710 from thermotoga maritima 0.7252 161 273
3kp5-assembly1.cif.gz_B staphylococcus epidermidis tcar in complex with kanamycin 0.7177 166 247
7l19-assembly2.cif.gz_C crystal structure of the marr family transcriptional regulator from enterobacter soli strain lf7 bound to indole 3 acetic acid 0.7092 162 247
3kp4-assembly1.cif.gz_A staphylococcus epidermidis tcar in complex with methicillin 0.7056 162 247
ID Description Score Start End Superfamily
3kp3B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7186 166 247 1.10.10.10
4ejvA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7104 162 247 1.10.10.10
af_P9WMF1_6_143_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7102 160 247 1.10.10.10
3kp4A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7056 162 247 1.10.10.10
2qwwA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.6883 162 243 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0B5IEW3-F1-model_v4 SalK 0.9929 2 289
AF-A0A5P2AKV3-F1-model_v4 SalK 0.9927 2 289
AF-A0A498DUV0-F1-model_v4 SalK 0.9923 4 289
AF-A0A6B2RTG5-F1-model_v4 SalK 0.992 4 185
AF-A0A117PE68-F1-model_v4 SalK 0.9917 1 289

Map