F211103

General Info

Members Datasets Scaffolds Average Seq Length
151 112 142 601

Family's Representative Sequence

Representative Sequence 3300005841|Ga0068863_100070490|Ga0068863_1000704902
Length 655
Sequence MTRSNRERVWLPLVLVLLTGCLTFSANAQDHKVASPEIAFTVSMPKPHTHLLEVDLRIKRGAAEPVTQQQVLVMPVWTPGSYLIREFERHVQDFAALDSSGQPLRWQKVNKNSWRIETNGSRDWRATYRVYANELSVRTNEVNSDHAFWNNGELLMYPEGFLKSPSTLRVLAPQPWKVATGLPPVPGQKNMFRAPNFDVLYDSPVEVSDFKTISFEVKGVPHRIVIDGEGNYDPEKVRTDVKRIVETEIELMGGEIPYHDYTFILHLRTNASGGLEHLNSTALGYPRFGFAADRNAGVNSASPNAPPQRTYRAFLSLVAHEFFHLWNVKRIRPDALGPFDYTSENYTRSLWVAEGVTEYYARIALRRAGFTSETDFLKEQARVFQTLQDRPGRLAMSVEESSFDAWIKYYRQDENSINSQVDYYDKGAILGLLLDLEIRKRSNGAKSLDDVMRYLYTEFFKKDRNYSPEDFQKACELMAGESMETFFAKYVRGRDELDYDSGLSAAGLRLDKMSTPDGSKATEKAYLGADLSQEGEWLMVRRVYAGSPAYEQGLNTGDQIVALGNMRANKEFFDSRIAEKRPGDLLSLTIFRSDDLSTLLIKLGAKANAVYRIVPVPNPTEQQKRIYESWLGIKSNARLGAQTSSLQTRRRARSS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
3 2738541284 Pedobacter sp. YR016 Isolate Unclassified
4 2738543023 Pedobacter sp. OK628 Isolate Unclassified
5 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
6 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
7 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
8 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
9 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
10 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
11 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
12 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
13 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
16 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
17 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
18 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
19 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
20 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
21 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
22 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
23 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
30 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
31 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
32 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
33 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
34 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
35 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
36 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
43 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
65 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
66 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
67 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
68 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
85 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
90 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
91 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
94 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
95 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
96 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
97 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
98 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
101 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
102 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
104 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
105 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
106 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
107 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
108 3300049770 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_B_4_control Metagenome Rhizosphere
109 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
110 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
111 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
112 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.04
Metatranscriptomes 0
Isolates 5.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.31
Nodule 0
Rhizoplane 0.66
Rhizosphere 88.08
Stem 0
Stem Tuber 0
Unclassified 7.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2442621 2162886007 Bacteria 3310
2 CNAas_1000075 3300000532 Bacteria 7451
3 JGI24737J22298_10002984 3300001990 Bacteria 5996
4 JGI24751J29686_10000109 3300002459 Bacteria 43362
5 Ga0065714_10002351 3300005288 Bacteria 54297
6 Ga0065714_10064496 3300005288 Bacteria 48442
7 Ga0065704_10077750 3300005289 Bacteria 4620
8 Ga0065704_10081035 3300005289 Bacteria 3831
9 Ga0065712_10000123 3300005290 Bacteria 89338
10 Ga0065715_10092849 3300005293 Unclassified 4879
11 Ga0065715_10100663 3300005293 Bacteria 3281
12 Ga0070658_10022613 3300005327 Bacteria 5045
13 Ga0070683_100141095 3300005329 Unclassified 2283
14 Ga0070670_100000876 3300005331 Bacteria 23661
15 Ga0070670_100003212 3300005331 Bacteria 13494
16 Ga0068869_100076944 3300005334 Bacteria 2481
17 Ga0068869_100080356 3300005334 Bacteria 2432
18 Ga0068868_100073930 3300005338 Unclassified 2722
19 Ga0068868_100106053 3300005338 Bacteria 2279
20 Ga0070689_100002997 3300005340 Bacteria 11109
21 Ga0070669_100003842 3300005353 Bacteria 10853
22 Ga0070669_100008386 3300005353 Bacteria 7374
23 Ga0070659_100017591 3300005366 Bacteria 5384
24 Ga0070694_100013688 3300005444 Bacteria 5069
25 Ga0070694_100014567 3300005444 Bacteria 4923
26 Ga0070708_100008292 3300005445 Bacteria 8344
27 Ga0070706_100000137 3300005467 Bacteria 91778
28 Ga0070706_100019651 3300005467 Bacteria 6229
29 Ga0070707_100033538 3300005468 Bacteria 4896
30 Ga0070698_100005604 3300005471 Bacteria 13731
31 Ga0070699_100007363 3300005518 Bacteria 9584
32 Ga0070699_100031171 3300005518 Bacteria 4603
33 Ga0070699_100031661 3300005518 Bacteria 4567
34 Ga0070699_100132043 3300005518 Bacteria 2201
35 Ga0070697_100000068 3300005536 Bacteria 83020
36 Ga0070697_100000131 3300005536 Bacteria 60013
37 Ga0070697_100035745 3300005536 Bacteria 4010
38 Ga0070697_100045536 3300005536 Bacteria 3555
39 Ga0070686_100001600 3300005544 Bacteria 12730
40 Ga0070695_100017096 3300005545 Unclassified 4400
41 Ga0068857_100014397 3300005577 Bacteria 6897
42 Ga0068859_100005692 3300005617 Bacteria 12684
43 Ga0068859_100067280 3300005617 Unclassified 3617
44 Ga0068864_100005466 3300005618 Bacteria 10422
45 Ga0068861_100007820 3300005719 Bacteria 7348
46 Ga0068861_100022532 3300005719 Bacteria 4540
47 Ga0068863_100027402 3300005841 Bacteria 5435
48 Ga0068863_100070490 3300005841 Bacteria 3306
49 Ga0068858_100070396 3300005842 Bacteria 3242
50 Ga0068860_100032281 3300005843 Archaea 5032
51 Ga0081539_10000725 3300005985 Bacteria 66076
52 Ga0081539_10000887 3300005985 Bacteria 57193
53 Ga0081539_10002223 3300005985 Bacteria 28295
54 Ga0075366_10012835 3300006195 Bacteria 4762
55 Ga0075434_100042672 3300006871 Unclassified 4497
56 Ga0075436_100005160 3300006914 Bacteria 8992
57 Ga0097620_100005692 3300006931 Bacteria 12684
58 Ga0097620_100067282 3300006931 Unclassified 3617
59 Ga0105240_10017839 3300009093 Bacteria 9551
60 Ga0105247_10000431 3300009101 Bacteria 35659
61 Ga0114129_10011976 3300009147 Bacteria 12336
62 Ga0114129_10098115 3300009147 Bacteria 4055
63 Ga0105243_10000141 3300009148 Bacteria 82657
64 Ga0105242_10040316 3300009176 Bacteria 3763
65 Ga0105248_10032585 3300009177 Bacteria 5823
66 Ga0105237_10001299 3300009545 Bacteria 33252
67 Ga0105237_10010174 3300009545 Bacteria 10024
68 Ga0105237_10015836 3300009545 Bacteria 7842
69 Ga0105238_10024511 3300009551 Bacteria 6149
70 Ga0105249_10025023 3300009553 Bacteria 5371
71 Ga0105239_10000009 3300010375 Bacteria 361182
72 Ga0105239_10000015 3300010375 Bacteria 319892
73 Ga0105239_10001186 3300010375 Bacteria 35727
74 Ga0105239_10028562 3300010375 Bacteria 6133
75 Ga0157373_10007734 3300013100 Bacteria 7990
76 Ga0157371_10000229 3300013102 Bacteria 81458
77 Ga0157378_10056445 3300013297 Bacteria 3499
78 Ga0163162_10008956 3300013306 Bacteria 9730
79 Ga0157372_10027769 3300013307 Bacteria 6168
80 Ga0157372_10081905 3300013307 Bacteria 3653
81 Ga0157372_10143100 3300013307 Bacteria 2757
82 Ga0157375_10014023 3300013308 Bacteria 7147
83 Ga0163163_10016126 3300014325 Bacteria 6932
84 Ga0163163_10027233 3300014325 Bacteria 5474
85 Ga0157379_10125573 3300014968 Bacteria 2308
86 Ga0182006_1010447 3300015261 Bacteria 4129
87 Ga0213876_10000060 3300021384 Bacteria 131803
88 Ga0213876_10000224 3300021384 Bacteria 56116
89 Ga0209233_1001497 3300025261 Bacteria 9192
90 Ga0209455_1003747 3300025272 Bacteria 5242
91 Ga0207710_10000533 3300025900 Bacteria 23323
92 Ga0207647_10001231 3300025904 Bacteria 19711
93 Ga0207684_10000314 3300025910 Bacteria 68706
94 Ga0207695_10007302 3300025913 Bacteria 14106
95 Ga0207695_10036162 3300025913 Bacteria 5342
96 Ga0207681_10002885 3300025923 Bacteria 10870
97 Ga0207681_10008835 3300025923 Bacteria 6157
98 Ga0207694_10007534 3300025924 Bacteria 8248
99 Ga0207650_10000047 3300025925 Bacteria 175675
100 Ga0207650_10002246 3300025925 Bacteria 13491
101 Ga0207709_10000072 3300025935 Bacteria 178084
102 Ga0207670_10002111 3300025936 Bacteria 10390
103 Ga0207711_10016939 3300025941 Bacteria 6052
104 Ga0207689_10004284 3300025942 Bacteria 12986
105 Ga0207689_10049255 3300025942 Bacteria 3475
106 Ga0207689_10093624 3300025942 Bacteria 2468
107 Ga0207712_10027379 3300025961 Bacteria 3806
108 Ga0207640_10077570 3300025981 Unclassified 2259
109 Ga0207641_10020550 3300026088 Bacteria 5424
110 Ga0207641_10104591 3300026088 Bacteria 2500
111 Ga0207676_10015767 3300026095 Bacteria 5462
112 Ga0207676_10093481 3300026095 Bacteria 2476
113 Ga0307517_10006452 3300028786 Bacteria 17363
114 Ga0307515_10003943 3300028794 Bacteria 30968
115 Ga0307412_10024900 3300031911 Bacteria 3700
116 Ga0373951_0001026 3300035091 Bacteria 7529
117 Ga0395905_0082989 3300037471 Bacteria 3003
118 Ga0436365_0706054 3300039437 Bacteria 124498
119 Ga0436365_1344587 3300039437 Bacteria 210334
120 Ga0495664_0005378 3300046477 Bacteria 7028
121 Ga0495585_0000313 3300046492 Bacteria 48193
122 Ga0495606_0007230 3300046507 Bacteria 10008
123 Ga0495668_0000017 3300046616 Bacteria 434025
124 Ga0495625_0107824 3300046660 Bacteria 1906
125 Ga0495674_0008015 3300047319 Bacteria 10084
126 Ga0496107_0069127 3300048910 Bacteria 2563
127 Ga0496116_0002887 3300048919 Bacteria 17585
128 Ga0496117_0000407 3300048920 Bacteria 72427
129 Ga0496122_0018739 3300048925 Bacteria 6369
130 Ga0501292_001258 3300049515 Unclassified 3104
131 Ga0501296_000887 3300049519 Bacteria 2942
132 Ga0501038_0017772 3300049574 Bacteria 6426
133 Ga0501217_011845 3300049661 Unclassified 1935
134 Ga0501235_003811 3300049669 Bacteria 3259
135 Ga0501225_0002215 3300049705 Bacteria 6007
136 Ga0501234_003684 3300049707 Bacteria 2409
137 Ga0501241_001942 3300049758 Unclassified 4058
138 Ga0501273_002277 3300049770 Bacteria 1939
139 Ga0501283_003740 3300049779 Unclassified 2028
140 nmdc:mga08x19_2266_c2 3300050514 Bacteria 3109
141 Ga0500608_006533 3300053122 Bacteria 4755
142 Ga0500622_0002008 3300053156 Bacteria 15202

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049519 Ga0501296_000887 Ga0501296_000887_56_1591 476
2 3300046660 Ga0495625_0107824 Ga0495625_0107824_44_1612 490
3 3300025942 Ga0207689_10049255 Ga0207689_100492554 502
4 3300005334 Ga0068869_100076944 Ga0068869_1000769441 504
5 3300005444 Ga0070694_100013688 Ga0070694_1000136881 514
6 3300005545 Ga0070695_100017096 Ga0070695_1000170961 514
7 3300005719 Ga0068861_100007820 Ga0068861_1000078207 514
8 3300013297 Ga0157378_10056445 Ga0157378_100564453 514
9 3300046507 Ga0495606_0007230 Ga0495606_0007230_7955_9751 517
10 3300053122 Ga0500608_006533 Ga0500608_006533_835_2601 519
11 3300000532 CNAas_1000075 CNAas_10000754 521
12 3300005338 Ga0068868_100106053 Ga0068868_1001060532 525
13 3300005536 Ga0070697_100035745 Ga0070697_1000357453 525
14 3300005617 Ga0068859_100067280 Ga0068859_1000672803 525
15 3300006931 Ga0097620_100067282 Ga0097620_1000672823 525
16 3300025913 Ga0207695_10007302 Ga0207695_100073023 525
17 3300049661 Ga0501217_011845 Ga0501217_011845_30_1724 526
18 3300049779 Ga0501283_003740 Ga0501283_003740_90_1814 526
19 3300005293 Ga0065715_10092849 Ga0065715_100928494 527
20 3300046616 Ga0495668_0000017 Ga0495668_0000017_310723_312525 527
21 3300005544 Ga0070686_100001600 Ga0070686_1000016008 528
22 3300028786 Ga0307517_10006452 Ga0307517_100064527 528
23 3300005842 Ga0068858_100070396 Ga0068858_1000703962 529
24 3300009545 Ga0105237_10015836 Ga0105237_100158364 529
25 3300010375 Ga0105239_10000009 Ga0105239_1000000951 529
26 3300014968 Ga0157379_10125573 Ga0157379_101255732 529
27 3300005334 Ga0068869_100080356 Ga0068869_1000803561 530
28 3300025942 Ga0207689_10093624 Ga0207689_100936242 530
29 3300005471 Ga0070698_100005604 Ga0070698_10000560413 531
30 3300005289 Ga0065704_10081035 Ga0065704_100810352 532
31 3300026088 Ga0207641_10104591 Ga0207641_101045912 532
32 3300053156 Ga0500622_0002008 Ga0500622_0002008_9597_11351 532
33 3300005329 Ga0070683_100141095 Ga0070683_1001410951 533
34 3300005338 Ga0068868_100073930 Ga0068868_1000739301 533
35 3300039437 Ga0436365_1344587 Ga0436365_1344587_169767_171497 533
36 3300049770 Ga0501273_002277 Ga0501273_002277_103_1872 533
37 3300005444 Ga0070694_100014567 Ga0070694_1000145673 534
38 3300005841 Ga0068863_100027402 Ga0068863_1000274022 534
39 3300009093 Ga0105240_10017839 Ga0105240_100178398 534
40 3300009147 Ga0114129_10098115 Ga0114129_100981153 534
41 3300025913 Ga0207695_10036162 Ga0207695_100361624 534
42 3300005288 Ga0065714_10064496 Ga0065714_1006449615 535
43 3300005290 Ga0065712_10000123 Ga0065712_1000012350 535
44 3300010375 Ga0105239_10028562 Ga0105239_100285624 535
45 3300046477 Ga0495664_0005378 Ga0495664_0005378_2054_3793 535
46 3300047319 Ga0495674_0008015 Ga0495674_0008015_4073_5812 535
47 3300031911 Ga0307412_10024900 Ga0307412_100249003 537
48 3300006914 Ga0075436_100005160 Ga0075436_1000051608 539
49 3300050514 nmdc:mga08x19_2266_c2 nmdc:mga08x19_2266_c2_197_2083 539
50 3300035091 Ga0373951_0001026 Ga0373951_0001026_899_2773 541
51 3300005445 Ga0070708_100008292 Ga0070708_1000082924 543
52 3300005467 Ga0070706_100019651 Ga0070706_1000196512 543
53 3300005468 Ga0070707_100033538 Ga0070707_1000335381 543
54 3300005518 Ga0070699_100007363 Ga0070699_1000073635 543
55 3300005536 Ga0070697_100045536 Ga0070697_1000455362 543
56 iso_pu_bacteria 2896317667 2896321472 543
57 iso_pu_bacteria 2896344016 2896346716 543
58 iso_pu_bacteria 3003233435 3003234653 543
59 3300025272 Ga0209455_1003747 Ga0209455_10037474 544
60 3300005293 Ga0065715_10100663 Ga0065715_101006633 545
61 3300005843 Ga0068860_100032281 Ga0068860_1000322814 545
62 3300009101 Ga0105247_10000431 Ga0105247_1000043125 545
63 3300025900 Ga0207710_10000533 Ga0207710_1000053315 545
64 3300001990 JGI24737J22298_10002984 JGI24737J22298_100029845 546
65 3300005327 Ga0070658_10022613 Ga0070658_100226133 546
66 3300005366 Ga0070659_100017591 Ga0070659_1000175914 546
67 3300005577 Ga0068857_100014397 Ga0068857_1000143974 546
68 3300006195 Ga0075366_10012835 Ga0075366_100128352 546
69 3300013100 Ga0157373_10007734 Ga0157373_100077344 546
70 3300013102 Ga0157371_10000229 Ga0157371_100002297 546
71 3300013307 Ga0157372_10027769 Ga0157372_100277693 546
72 3300013307 Ga0157372_10143100 Ga0157372_101431001 546
73 3300025261 Ga0209233_1001497 Ga0209233_10014973 546
74 3300025904 Ga0207647_10001231 Ga0207647_100012313 546
75 3300048910 Ga0496107_0069127 Ga0496107_0069127_92_1957 546
76 iso_pu_bacteria 2932082852 2932087123 546
77 3300005985 Ga0081539_10000887 Ga0081539_1000088732 547
78 3300013308 Ga0157375_10014023 Ga0157375_100140235 547
79 3300005617 Ga0068859_100005692 Ga0068859_1000056923 548
80 3300006931 Ga0097620_100005692 Ga0097620_1000056923 548
81 3300013306 Ga0163162_10008956 Ga0163162_100089566 548
82 3300026095 Ga0207676_10093481 Ga0207676_100934812 548
83 iso_pu_bacteria 2738543023 2739302761 548
84 3300002459 JGI24751J29686_10000109 JGI24751J29686_1000010911 549
85 3300005331 Ga0070670_100000876 Ga0070670_10000087611 549
86 3300005353 Ga0070669_100008386 Ga0070669_1000083865 549
87 3300005518 Ga0070699_100031661 Ga0070699_1000316613 549
88 3300009176 Ga0105242_10040316 Ga0105242_100403162 549
89 3300009545 Ga0105237_10010174 Ga0105237_100101742 549
90 3300009551 Ga0105238_10024511 Ga0105238_100245112 549
91 3300009553 Ga0105249_10025023 Ga0105249_100250232 549
92 3300010375 Ga0105239_10000015 Ga0105239_10000015191 549
93 3300010375 Ga0105239_10001186 Ga0105239_1000118610 549
94 3300013307 Ga0157372_10081905 Ga0157372_100819054 549
95 3300014325 Ga0163163_10016126 Ga0163163_100161263 549
96 3300014325 Ga0163163_10027233 Ga0163163_100272334 549
97 3300021384 Ga0213876_10000224 Ga0213876_1000022428 549
98 3300025923 Ga0207681_10008835 Ga0207681_100088354 549
99 3300025924 Ga0207694_10007534 Ga0207694_100075345 549
100 3300025925 Ga0207650_10000047 Ga0207650_1000004722 549
101 3300025961 Ga0207712_10027379 Ga0207712_100273792 549
102 3300025981 Ga0207640_10077570 Ga0207640_100775702 549
103 3300028794 Ga0307515_10003943 Ga0307515_100039436 549
104 3300046492 Ga0495585_0000313 Ga0495585_0000313_7118_8920 549
105 3300049669 Ga0501235_003811 Ga0501235_003811_939_2810 549
106 3300049705 Ga0501225_0002215 Ga0501225_0002215_2910_4781 549
107 3300049707 Ga0501234_003684 Ga0501234_003684_462_2333 549
108 iso_pu_bacteria 2738541284 2738763993 549
109 3300005288 Ga0065714_10002351 Ga0065714_1000235136 550
110 3300005331 Ga0070670_100003212 Ga0070670_10000321210 550
111 3300005340 Ga0070689_100002997 Ga0070689_1000029978 550
112 3300005353 Ga0070669_100003842 Ga0070669_1000038424 550
113 3300005467 Ga0070706_100000137 Ga0070706_10000013750 550
114 3300005518 Ga0070699_100031171 Ga0070699_1000311714 550
115 3300005518 Ga0070699_100132043 Ga0070699_1001320431 550
116 3300005536 Ga0070697_100000068 Ga0070697_1000000689 550
117 3300005536 Ga0070697_100000131 Ga0070697_10000013140 550
118 3300005618 Ga0068864_100005466 Ga0068864_1000054663 550
119 3300005719 Ga0068861_100022532 Ga0068861_1000225323 550
120 3300005841 Ga0068863_100070490 Ga0068863_1000704902 550
121 3300005985 Ga0081539_10000725 Ga0081539_1000072534 550
122 3300005985 Ga0081539_10002223 Ga0081539_100022234 550
123 3300006871 Ga0075434_100042672 Ga0075434_1000426724 550
124 3300009147 Ga0114129_10011976 Ga0114129_100119768 550
125 3300009177 Ga0105248_10032585 Ga0105248_100325854 550
126 3300009545 Ga0105237_10001299 Ga0105237_100012997 550
127 3300021384 Ga0213876_10000060 Ga0213876_1000006036 550
128 3300025910 Ga0207684_10000314 Ga0207684_1000031449 550
129 3300025923 Ga0207681_10002885 Ga0207681_100028854 550
130 3300025925 Ga0207650_10002246 Ga0207650_1000224610 550
131 3300025936 Ga0207670_10002111 Ga0207670_100021115 550
132 3300025941 Ga0207711_10016939 Ga0207711_100169395 550
133 3300025942 Ga0207689_10004284 Ga0207689_1000428411 550
134 3300026088 Ga0207641_10020550 Ga0207641_100205502 550
135 3300026095 Ga0207676_10015767 Ga0207676_100157674 550
136 3300037471 Ga0395905_0082989 Ga0395905_0082989_86_1942 550
137 3300039437 Ga0436365_0706054 Ga0436365_0706054_80495_82420 550
138 3300049515 Ga0501292_001258 Ga0501292_001258_568_2460 550
139 3300049574 Ga0501038_0017772 Ga0501038_0017772_3863_5761 550
140 iso_pu_bacteria 2721755487 2722730239 550
141 iso_pu_bacteria 2904780799 2904783882 550
142 iso_pu_bacteria 2919177583 2919181820 550
143 3300015261 Ga0182006_1010447 Ga0182006_10104472 551
144 3300049758 Ga0501241_001942 Ga0501241_001942_2104_3894 552
145 2162886007 SwRhRL2b_contig_2442621 SwRhRL2b_0265.00001120 554
146 3300005289 Ga0065704_10077750 Ga0065704_100777503 554
147 3300009148 Ga0105243_10000141 Ga0105243_1000014122 554
148 3300025935 Ga0207709_10000072 Ga0207709_10000072111 554
149 3300048919 Ga0496116_0002887 Ga0496116_0002887_4742_6487 554
150 3300048920 Ga0496117_0000407 Ga0496117_0000407_48281_50026 554
151 3300048925 Ga0496122_0018739 Ga0496122_0018739_204_1949 554

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05299

Peptidase_M61

M61 glycyl aminopeptidase

313

430

0.99

PF13180

PDZ_2

PDZ domain

525

603

0.95

PF17899

Peptidase_M61_N

Peptidase M61 N-terminal domain

39

209

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gcn-assembly1.cif.gz_A crystal structure of degs h198p/d320a mutant modified by dfp in complex with omp peptide (yqf) 0.902 444 528
6ew9-assembly1.cif.gz_C crystal structure of degs stress sensor protease in complex with activating dnrlglvyqf peptide 0.9015 444 528
4rqy-assembly2.cif.gz_B re-refined structure of 1te0 - structural analysis of degs, a stress sensor of the bacterial periplasm 0.8995 445 528
3gdv-assembly1.cif.gz_C crystal structure of degs h198p/d320a mutant modified by dfp and in complex with yqf peptide 0.899 444 527
8k2y-assembly1.cif.gz_B crystal structure of mucd 0.8945 448 528
ID Description Score Start End Superfamily
4fgmA02 Mainly Alpha;Orthogonal Bundle;Neutral Protease; domain 2;Neutral Protease Domain 2 0.9024 159 397 1.10.390.10
3gdvC03 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.899 444 527 2.30.42.10
af_A0A143ZXD4_317_404_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8899 446 524 2.30.42.10
af_Q9P7S1_280_374_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8856 453 526 2.30.42.10
3pv2B02 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8855 456 527 2.30.42.10
ID Description Score Start End GO Terms
AF-A0A5C7UR49-F1-model_v4 M61 family peptidase 0.932 10 553
AF-A0A839GY75-F1-model_v4 Putative metalloprotease with PDZ domain 0.9248 5 553 GO:0006508
GO:0008237
AF-A0A519XYV1-F1-model_v4 M61 family peptidase 0.9233 119 553
AF-A0A7V1AMN8-F1-model_v4 M61 family peptidase 0.9229 25 553
AF-A0A6B3LWM6-F1-model_v4 M61 family metallopeptidase 0.9208 25 553

Feature Viewer

pLDDT pTM Quality
87.92 0.87 High
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Predicted Structure (AlphaFold2)

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