F209757

General Info

Members Datasets Scaffolds Average Seq Length
150 115 150 329

Family's Representative Sequence

Representative Sequence 3300047472|Ga0495686_0040417|Ga0495686_0040417_1472_2575
Length 351
Sequence MSKRLDFSKSVHPQLWGELKAPMGRRSQIYAYDSSQKDKIADGVTIAGVDVGGLDADQAAAAVRHRLLAPLRHSLKVSFDGETWTLPGKKLMVRADVDGAVDQAIEQSQQGGLPTRLVRYVTGGEVDQPVAAQLNYSQPAINRFVRRVAKEVNREPEDASVGPSGDSLEVVAGKDGRKLRDDLLTEELENAVLNADAPHTVVATVHSTQPKVTTKDIASRYPSYLTLDRATFTLKLWRHLKLARTYTVAVGQEGLETPEGLYAIEEKEENPTWHVPESAWAGDLAGATIPPGPSNPIKARWMAIYEGAGIHGTEETESLGSAASHGCVRMAIADVEELYDLVEVGTPIYIG

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
22 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
62 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
63 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
64 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
65 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
66 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
67 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
68 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
69 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
70 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
71 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
72 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
73 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
74 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
75 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
76 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
77 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
78 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
79 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
80 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
81 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
82 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
83 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
84 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
85 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
88 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
89 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
90 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
93 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
97 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
100 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
101 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
102 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
103 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
104 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
105 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
108 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
109 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
110 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
111 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
112 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
113 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
114 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
115 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.67
Nodule 0
Rhizoplane 13.33
Rhizosphere 84.67
Stem 0
Stem Tuber 0
Unclassified 1.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10169639 3300005327 Bacteria 1833
2 Ga0070683_100037087 3300005329 Bacteria 4462
3 Ga0070683_100096592 3300005329 Bacteria 2779
4 Ga0068868_100000082 3300005338 Bacteria 57070
5 Ga0070691_10000007 3300005341 Bacteria 64190
6 Ga0070661_100000223 3300005344 Bacteria 46956
7 Ga0070692_10057205 3300005345 Bacteria 2044
8 Ga0070668_100034824 3300005347 Unclassified 3837
9 Ga0070675_100000028 3300005354 Bacteria 103914
10 Ga0070688_100000049 3300005365 Bacteria 57316
11 Ga0070700_100063633 3300005441 Bacteria 2334
12 Ga0070678_100016624 3300005456 Bacteria 4713
13 Ga0070662_100000002 3300005457 Bacteria 253208
14 Ga0070681_10047940 3300005458 Bacteria 4270
15 Ga0070685_10000082 3300005466 Bacteria 57751
16 Ga0070679_100061901 3300005530 Bacteria 3730
17 Ga0070684_100126080 3300005535 Bacteria 2306
18 Ga0070684_100178922 3300005535 Unclassified 1928
19 Ga0070672_100000006 3300005543 Bacteria 117060
20 Ga0070665_100000040 3300005548 Bacteria 305480
21 Ga0070665_100011450 3300005548 Bacteria 8968
22 Ga0070665_100077223 3300005548 Bacteria 3337
23 Ga0068855_100281122 3300005563 Bacteria 1848
24 Ga0068856_100094622 3300005614 Bacteria 2974
25 Ga0068866_10009252 3300005718 Bacteria 4178
26 Ga0068851_10016133 3300005834 Bacteria 3569
27 Ga0068863_100000365 3300005841 Bacteria 46055
28 Ga0068858_100000353 3300005842 Bacteria 48412
29 Ga0068858_100001211 3300005842 Bacteria 26757
30 Ga0068862_100008033 3300005844 Bacteria 8732
31 Ga0081540_1000063 3300005983 Bacteria 119510
32 Ga0081539_10011218 3300005985 Bacteria 7126
33 Ga0070712_100050421 3300006175 Bacteria 2896
34 Ga0075430_100050067 3300006846 Bacteria 3524
35 Ga0105247_10000435 3300009101 Bacteria 35491
36 Ga0105247_10167122 3300009101 Bacteria 1460
37 Ga0105242_10000427 3300009176 Bacteria 33600
38 Ga0105242_10087160 3300009176 Bacteria 2621
39 Ga0105249_10003273 3300009553 Bacteria 14037
40 Ga0157369_10000078 3300013105 Bacteria 135173
41 Ga0157374_10320191 3300013296 Bacteria 1537
42 Ga0157378_10001433 3300013297 Bacteria 21480
43 Ga0157378_10027235 3300013297 Bacteria 5044
44 Ga0157375_10000286 3300013308 Bacteria 46112
45 Ga0157380_10416119 3300014326 Bacteria 1280
46 Ga0163161_10000021 3300017792 Bacteria 208779
47 Ga0163161_10105035 3300017792 Bacteria 2106
48 Ga0213876_10001623 3300021384 Bacteria 13749
49 Ga0207656_10007501 3300025321 Bacteria 3976
50 Ga0207682_10000013 3300025893 Bacteria 83196
51 Ga0207642_10002521 3300025899 Bacteria 5706
52 Ga0207710_10000198 3300025900 Bacteria 56537
53 Ga0207705_10100625 3300025909 Bacteria 2126
54 Ga0207649_10000028 3300025920 Bacteria 161482
55 Ga0207659_10000022 3300025926 Bacteria 143432
56 Ga0207706_10000001 3300025933 Bacteria 423014
57 Ga0207686_10000061 3300025934 Bacteria 97978
58 Ga0207686_10002542 3300025934 Bacteria 9903
59 Ga0207686_10061083 3300025934 Bacteria 2388
60 Ga0207691_10000025 3300025940 Bacteria 129424
61 Ga0207661_10069667 3300025944 Bacteria 2868
62 Ga0207661_10081932 3300025944 Unclassified 2666
63 Ga0207658_10381060 3300025986 Bacteria 1235
64 Ga0207677_10000257 3300026023 Bacteria 40780
65 Ga0207677_10000324 3300026023 Bacteria 34713
66 Ga0207703_10000078 3300026035 Bacteria 115634
67 Ga0207703_10000339 3300026035 Bacteria 50936
68 Ga0207639_10176274 3300026041 Bacteria 1815
69 Ga0207702_10071522 3300026078 Bacteria 2987
70 Ga0207641_10001110 3300026088 Bacteria 27049
71 Ga0207641_10042623 3300026088 Bacteria 3808
72 Ga0207683_10030380 3300026121 Bacteria 4681
73 Ga0207698_10061753 3300026142 Bacteria 2922
74 Ga0268266_10000045 3300028379 Bacteria 312955
75 Ga0268266_10005461 3300028379 Bacteria 11838
76 Ga0268266_10035922 3300028379 Bacteria 4215
77 Ga0268266_10125319 3300028379 Bacteria 2291
78 Ga0268265_10071037 3300028380 Bacteria 2709
79 Ga0466957_0110310 3300044842 Bacteria 1744
80 Ga0495629_0000431 3300046459 Bacteria 34967
81 Ga0495629_0001682 3300046459 Bacteria 17376
82 Ga0495638_0086847 3300046460 Bacteria 1890
83 Ga0495651_0076982 3300046462 Bacteria 2526
84 Ga0495653_0052372 3300046463 Bacteria 3128
85 Ga0495594_0000001 3300046499 Bacteria 293051
86 Ga0495606_0000108 3300046507 Bacteria 140473
87 Ga0495608_0017250 3300046511 Bacteria 4997
88 Ga0495630_0000012 3300046517 Bacteria 223330
89 Ga0495652_0000023 3300046529 Bacteria 168049
90 Ga0495640_0010438 3300046533 Bacteria 7177
91 Ga0495640_0028899 3300046533 Bacteria 3986
92 Ga0495586_0011309 3300046535 Bacteria 4746
93 Ga0495587_0003113 3300046536 Bacteria 11097
94 Ga0495645_0001958 3300046543 Bacteria 13984
95 Ga0495622_0000319 3300046557 Bacteria 35466
96 Ga0495634_0185307 3300046642 Bacteria 1301
97 Ga0495625_0001003 3300046660 Bacteria 37293
98 Ga0495635_0000057 3300046663 Bacteria 67714
99 Ga0495588_0000149 3300046674 Bacteria 100598
100 Ga0495657_0000020 3300046675 Bacteria 160089
101 Ga0495647_0000260 3300046681 Bacteria 14546
102 Ga0495613_0000083 3300046689 Bacteria 90138
103 Ga0495613_0000565 3300046689 Bacteria 30469
104 Ga0495613_0100310 3300046689 Unclassified 2091
105 Ga0495624_0000024 3300046690 Bacteria 98577
106 Ga0495600_0006716 3300046809 Bacteria 7013
107 Ga0495604_0049812 3300047317 Bacteria 3253
108 Ga0495674_0000019 3300047319 Bacteria 185107
109 Ga0495676_0000127 3300047321 Bacteria 57750
110 Ga0495676_0036539 3300047321 Bacteria 4100
111 Ga0495680_0000312 3300047322 Bacteria 54495
112 Ga0495675_0000272 3300047444 Bacteria 37442
113 Ga0495673_0055297 3300047469 Unclassified 1722
114 Ga0495686_0040417 3300047472 Bacteria 2974
115 Ga0495602_0000844 3300048088 Bacteria 29474
116 Ga0496100_0000005 3300048903 Bacteria 312112
117 Ga0496100_0000010 3300048903 Bacteria 205204
118 Ga0496101_0000022 3300048904 Bacteria 216728
119 Ga0496101_0000025 3300048904 Bacteria 205204
120 Ga0496102_0000081 3300048905 Bacteria 139266
121 Ga0496102_0327232 3300048905 Bacteria 1444
122 Ga0496103_0000031 3300048906 Bacteria 204016
123 Ga0496104_0000009 3300048907 Bacteria 488055
124 Ga0496105_0000007 3300048908 Bacteria 339658
125 Ga0496106_0000012 3300048909 Bacteria 205158
126 Ga0496106_0000087 3300048909 Bacteria 73787
127 Ga0496106_0000485 3300048909 Bacteria 28211
128 Ga0496107_0000010 3300048910 Bacteria 205188
129 Ga0496107_0000046 3300048910 Bacteria 67209
130 Ga0496108_0000001 3300048911 Bacteria 919044
131 Ga0496109_0000004 3300048912 Bacteria 404818
132 Ga0496109_0000115 3300048912 Bacteria 82707
133 Ga0496109_0115372 3300048912 Bacteria 2499
134 Ga0496110_0020501 3300048913 Bacteria 5582
135 Ga0496110_0073966 3300048913 Unclassified 3025
136 Ga0496125_0023854 3300048928 Bacteria 5638
137 Ga0501042_0186952 3300049578 Bacteria 1494
138 Ga0501070_0004136 3300049586 Bacteria 12493
139 Ga0501074_0019732 3300049590 Bacteria 4896
140 Ga0501076_0011544 3300049592 Bacteria 6586
141 nmdc:mga0qj67_66464_c1 3300050509 Bacteria 2872
142 Ga0495601_0000134 3300053077 Bacteria 41980
143 Ga0495612_0012296 3300053078 Bacteria 3450
144 Ga0495655_0000006 3300053083 Bacteria 201200
145 Ga0495655_0005263 3300053083 Bacteria 2274
146 Ga0495595_0000073 3300053084 Bacteria 49554
147 Ga0495595_0000141 3300053084 Bacteria 29805
148 Ga0495619_0000010 3300053085 Bacteria 302390
149 Ga0495619_0000274 3300053085 Bacteria 37357
150 Ga0500628_000060 3300053129 Bacteria 32734

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300013297 Ga0157378_10027235 Ga0157378_100272357 271
2 3300005614 Ga0068856_100094622 Ga0068856_1000946223 293
3 3300026078 Ga0207702_10071522 Ga0207702_100715222 293
4 3300013105 Ga0157369_10000078 Ga0157369_1000007832 303
5 3300006846 Ga0075430_100050067 Ga0075430_1000500672 304
6 3300050509 nmdc:mga0qj67_66464_c1 nmdc:mga0qj67_66464_c1_1319_2356 304
7 3300013308 Ga0157375_10000286 Ga0157375_1000028630 305
8 3300053083 Ga0495655_0005263 Ga0495655_0005263_971_2011 305
9 3300005985 Ga0081539_10011218 Ga0081539_100112183 307
10 3300005456 Ga0070678_100016624 Ga0070678_1000166243 308
11 3300026121 Ga0207683_10030380 Ga0207683_100303804 308
12 3300048911 Ga0496108_0000001 Ga0496108_0000001_909446_910483 308
13 3300048912 Ga0496109_0000004 Ga0496109_0000004_163257_164294 308
14 3300048928 Ga0496125_0023854 Ga0496125_0023854_4425_5465 308
15 3300005365 Ga0070688_100000049 Ga0070688_10000004949 309
16 3300005466 Ga0070685_10000082 Ga0070685_1000008249 309
17 3300005345 Ga0070692_10057205 Ga0070692_100572051 310
18 3300021384 Ga0213876_10001623 Ga0213876_1000162310 311
19 3300005842 Ga0068858_100000353 Ga0068858_10000035320 312
20 3300026035 Ga0207703_10000339 Ga0207703_1000033919 312
21 3300005329 Ga0070683_100096592 Ga0070683_1000965922 313
22 3300005535 Ga0070684_100126080 Ga0070684_1001260802 313
23 3300006175 Ga0070712_100050421 Ga0070712_1000504213 313
24 3300025944 Ga0207661_10069667 Ga0207661_100696672 313
25 3300053085 Ga0495619_0000010 Ga0495619_0000010_127072_128085 314
26 3300009176 Ga0105242_10087160 Ga0105242_100871603 315
27 3300025934 Ga0207686_10061083 Ga0207686_100610832 315
28 3300044842 Ga0466957_0110310 Ga0466957_0110310_52_1092 315
29 3300005543 Ga0070672_100000006 Ga0070672_1000000065 316
30 3300009176 Ga0105242_10000427 Ga0105242_1000042718 316
31 3300025934 Ga0207686_10000061 Ga0207686_1000006123 316
32 3300025940 Ga0207691_10000025 Ga0207691_10000025117 316
33 3300046689 Ga0495613_0000083 Ga0495613_0000083_44697_45734 316
34 3300048905 Ga0496102_0000081 Ga0496102_0000081_12639_13676 316
35 3300048906 Ga0496103_0000031 Ga0496103_0000031_124668_125705 316
36 3300048909 Ga0496106_0000485 Ga0496106_0000485_24263_25300 316
37 3300005341 Ga0070691_10000007 Ga0070691_1000000718 317
38 3300026142 Ga0207698_10061753 Ga0207698_100617533 317
39 3300046459 Ga0495629_0001682 Ga0495629_0001682_3484_4521 318
40 3300046674 Ga0495588_0000149 Ga0495588_0000149_78381_79418 318
41 3300049578 Ga0501042_0186952 Ga0501042_0186952_443_1426 318
42 3300046460 Ga0495638_0086847 Ga0495638_0086847_245_1282 319
43 3300049590 Ga0501074_0019732 Ga0501074_0019732_282_1313 319
44 3300047472 Ga0495686_0040417 Ga0495686_0040417_1472_2575 320
45 3300009101 Ga0105247_10000435 Ga0105247_100004352 321
46 3300025900 Ga0207710_10000198 Ga0207710_1000019854 321
47 3300053084 Ga0495595_0000141 Ga0495595_0000141_11953_12990 321
48 3300005563 Ga0068855_100281122 Ga0068855_1002811222 322
49 3300046535 Ga0495586_0011309 Ga0495586_0011309_3600_4637 322
50 3300005338 Ga0068868_100000082 Ga0068868_10000008242 323
51 3300005441 Ga0070700_100063633 Ga0070700_1000636331 323
52 3300005458 Ga0070681_10047940 Ga0070681_100479402 323
53 3300005530 Ga0070679_100061901 Ga0070679_1000619013 323
54 3300017792 Ga0163161_10105035 Ga0163161_101050352 323
55 3300026023 Ga0207677_10000257 Ga0207677_1000025732 323
56 3300026041 Ga0207639_10176274 Ga0207639_101762742 323
57 3300046533 Ga0495640_0028899 Ga0495640_0028899_1326_2324 323
58 3300047319 Ga0495674_0000019 Ga0495674_0000019_67756_68754 323
59 3300005347 Ga0070668_100034824 Ga0070668_1000348243 324
60 3300005548 Ga0070665_100000040 Ga0070665_100000040230 324
61 3300005548 Ga0070665_100077223 Ga0070665_1000772233 324
62 3300005842 Ga0068858_100001211 Ga0068858_10000121111 324
63 3300005844 Ga0068862_100008033 Ga0068862_1000080334 324
64 3300009553 Ga0105249_10003273 Ga0105249_100032733 324
65 3300026035 Ga0207703_10000078 Ga0207703_1000007868 324
66 3300028379 Ga0268266_10000045 Ga0268266_10000045231 324
67 3300028379 Ga0268266_10035922 Ga0268266_100359224 324
68 3300028380 Ga0268265_10071037 Ga0268265_100710373 324
69 3300046689 Ga0495613_0100310 Ga0495613_0100310_846_1859 324
70 3300047321 Ga0495676_0000127 Ga0495676_0000127_23324_24361 324
71 3300048905 Ga0496102_0327232 Ga0496102_0327232_71_1108 324
72 3300049586 Ga0501070_0004136 Ga0501070_0004136_10051_11085 324
73 3300046689 Ga0495613_0000565 Ga0495613_0000565_23021_24061 325
74 3300046809 Ga0495600_0006716 Ga0495600_0006716_3505_4545 325
75 3300048913 Ga0496110_0073966 Ga0496110_0073966_1823_2860 325
76 3300053077 Ga0495601_0000134 Ga0495601_0000134_7602_8642 325
77 3300014326 Ga0157380_10416119 Ga0157380_104161191 326
78 3300009101 Ga0105247_10167122 Ga0105247_101671222 327
79 3300046533 Ga0495640_0010438 Ga0495640_0010438_3988_5025 327
80 3300025986 Ga0207658_10381060 Ga0207658_103810602 328
81 3300046690 Ga0495624_0000024 Ga0495624_0000024_54497_55534 328
82 3300048903 Ga0496100_0000010 Ga0496100_0000010_59558_60595 328
83 3300048904 Ga0496101_0000025 Ga0496101_0000025_59558_60595 328
84 3300048907 Ga0496104_0000009 Ga0496104_0000009_471288_472325 328
85 3300048908 Ga0496105_0000007 Ga0496105_0000007_15731_16768 328
86 3300048909 Ga0496106_0000012 Ga0496106_0000012_144582_145619 328
87 3300048910 Ga0496107_0000010 Ga0496107_0000010_144594_145631 328
88 3300048913 Ga0496110_0020501 Ga0496110_0020501_2084_3097 328
89 3300005354 Ga0070675_100000028 Ga0070675_100000028108 329
90 3300013297 Ga0157378_10001433 Ga0157378_1000143318 329
91 3300017792 Ga0163161_10000021 Ga0163161_1000002130 329
92 3300025926 Ga0207659_10000022 Ga0207659_1000002266 329
93 3300028379 Ga0268266_10005461 Ga0268266_100054611 329
94 3300046511 Ga0495608_0017250 Ga0495608_0017250_3774_4811 329
95 3300046663 Ga0495635_0000057 Ga0495635_0000057_7553_8590 329
96 3300005329 Ga0070683_100037087 Ga0070683_1000370872 330
97 3300005344 Ga0070661_100000223 Ga0070661_10000022347 330
98 3300005535 Ga0070684_100178922 Ga0070684_1001789221 330
99 3300025920 Ga0207649_10000028 Ga0207649_1000002848 330
100 3300025944 Ga0207661_10081932 Ga0207661_100819322 330
101 3300013296 Ga0157374_10320191 Ga0157374_103201911 331
102 3300046499 Ga0495594_0000001 Ga0495594_0000001_210950_211987 333
103 3300005841 Ga0068863_100000365 Ga0068863_10000036532 334
104 3300026088 Ga0207641_10001110 Ga0207641_100011103 334
105 3300046660 Ga0495625_0001003 Ga0495625_0001003_31997_33034 334
106 3300047469 Ga0495673_0055297 Ga0495673_0055297_220_1260 334
107 3300048912 Ga0496109_0115372 Ga0496109_0115372_905_1942 334
108 3300046463 Ga0495653_0052372 Ga0495653_0052372_652_1689 335
109 3300046557 Ga0495622_0000319 Ga0495622_0000319_8627_9664 335
110 3300047317 Ga0495604_0049812 Ga0495604_0049812_1286_2323 335
111 3300047322 Ga0495680_0000312 Ga0495680_0000312_9596_10633 335
112 3300005327 Ga0070658_10169639 Ga0070658_101696392 336
113 3300005457 Ga0070662_100000002 Ga0070662_10000000211 336
114 3300005548 Ga0070665_100011450 Ga0070665_1000114502 336
115 3300005718 Ga0068866_10009252 Ga0068866_100092526 336
116 3300005834 Ga0068851_10016133 Ga0068851_100161333 336
117 3300005983 Ga0081540_1000063 Ga0081540_1000063106 336
118 3300025321 Ga0207656_10007501 Ga0207656_100075013 336
119 3300025893 Ga0207682_10000013 Ga0207682_1000001338 336
120 3300025899 Ga0207642_10002521 Ga0207642_100025215 336
121 3300025909 Ga0207705_10100625 Ga0207705_101006252 336
122 3300025933 Ga0207706_10000001 Ga0207706_10000001191 336
123 3300025934 Ga0207686_10002542 Ga0207686_100025428 336
124 3300026023 Ga0207677_10000324 Ga0207677_1000032438 336
125 3300026088 Ga0207641_10042623 Ga0207641_100426232 336
126 3300028379 Ga0268266_10125319 Ga0268266_101253192 336
127 3300046459 Ga0495629_0000431 Ga0495629_0000431_13333_14370 336
128 3300046462 Ga0495651_0076982 Ga0495651_0076982_100_1140 336
129 3300046507 Ga0495606_0000108 Ga0495606_0000108_40320_41357 336
130 3300046517 Ga0495630_0000012 Ga0495630_0000012_116652_117689 336
131 3300046529 Ga0495652_0000023 Ga0495652_0000023_23550_24587 336
132 3300046536 Ga0495587_0003113 Ga0495587_0003113_6814_7851 336
133 3300046543 Ga0495645_0001958 Ga0495645_0001958_7769_8809 336
134 3300046642 Ga0495634_0185307 Ga0495634_0185307_144_1181 336
135 3300046675 Ga0495657_0000020 Ga0495657_0000020_126379_127419 336
136 3300046681 Ga0495647_0000260 Ga0495647_0000260_5557_6594 336
137 3300047321 Ga0495676_0036539 Ga0495676_0036539_1546_2583 336
138 3300047444 Ga0495675_0000272 Ga0495675_0000272_20566_21606 336
139 3300048088 Ga0495602_0000844 Ga0495602_0000844_13531_14568 336
140 3300048903 Ga0496100_0000005 Ga0496100_0000005_101013_102050 336
141 3300048904 Ga0496101_0000022 Ga0496101_0000022_139636_140673 336
142 3300048909 Ga0496106_0000087 Ga0496106_0000087_14184_15221 336
143 3300048910 Ga0496107_0000046 Ga0496107_0000046_8193_9230 336
144 3300048912 Ga0496109_0000115 Ga0496109_0000115_27258_28295 336
145 3300049592 Ga0501076_0011544 Ga0501076_0011544_5134_6171 336
146 3300053078 Ga0495612_0012296 Ga0495612_0012296_1362_2399 336
147 3300053083 Ga0495655_0000006 Ga0495655_0000006_55263_56300 336
148 3300053084 Ga0495595_0000073 Ga0495595_0000073_32671_33711 336
149 3300053085 Ga0495619_0000274 Ga0495619_0000274_20450_21490 336
150 3300053129 Ga0500628_000060 Ga0500628_000060_12342_13379 336

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12229

PG_binding_4

Putative peptidoglycan binding domain

84

199

0.97

PF03734

YkuD

L,D-transpeptidase catalytic domain

222

350

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ior-assembly1.cif.gz_A crystal structure of the n-terminal domain of htpg, the escherichia coli hsp90, bound to adp 0.6865 200 220
8any-assembly1.cif.gz_AI human mitochondrial ribosome in complex with lrpprc, slirp, a-site, p-site, e-site trnas and mrna 0.6681 204 230
5bmq-assembly1.cif.gz_A crystal structure of l,d-transpeptidase (yku) from stackebrandtia nassauensis 0.6208 206 335
4a1i-assembly1.cif.gz_A ykud from b.subtilis 0.6063 170 335
7u0l-assembly1.cif.gz_A crystal structure of the ccov-hupn-2018 rbd (domain b) in complex with canine apn 0.6041 207 224
ID Description Score Start End Superfamily
4a1iC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7535 203 335 2.40.440.10
2ychA03 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.743 207 229 3.30.420.40
4a1iC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7178 203 335 2.40.440.10
af_P63132_331_446_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.7146 205 230 3.30.70.270
af_Q9VEN6_71_200_3.30.420.80 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribosomal protein S11/S14 0.6822 205 229 3.30.420.80
ID Description Score Start End GO Terms
AF-M1ZVB3-F1-model_v4 VanW-like family protein 0.8301 40 199
AF-D1VTT3-F1-model_v4 VanW-like protein 0.8145 40 199 GO:0016020
AF-A0A7X6TTU5-F1-model_v4 G5 domain-containing protein 0.814 40 199
AF-A0A1M6CK33-F1-model_v4 Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains 0.8061 41 200 GO:0016020
AF-A0A7W0X8Y0-F1-model_v4 Peptidoglycan binding domain-containing protein 0.804 40 194

Feature Viewer

pLDDT pTM Quality
63.32 0.5 Medium
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Predicted Structure (AlphaFold2)

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