F204601

General Info

Members Datasets Scaffolds Average Seq Length
148 86 140 671

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2887443736|2887447068
Length 738
Sequence SATTMATDAVGDHAGHPLLELSGLHTQFATRDGMVQAVHGVDLTVPAGKTVCIVGESGCGKSVTARSVLGLVDHPGHVNAGHVWWNSPTLGHVDLAAMDPKGADIRHVRAQEIGMVFQEPIASLSPMYTVGAQLGEMLRLHQGMTKQQARERAVELLTRVGIPKAHTRVDAYPWQMSGGMCQRVMIAMALAGDPTLLIADEPTTALDVTIQARILDLFRELQDETGMSVLFITHDLGVVAEIADEVAVMYLGRVVEQGTVEEIFENPRHPYTRALMGSIPTLGHTRRSAGRLSTIRGTVPHGAHRPTGCSFHPRCDVAVAGLCEVTAPRTLDDGASLIECHRWDPEALGSEVELGLPTLRREATPTTAERAHAENVTSATGNNLTESAPLLEVREVSMRFPVRSGFLNRHRADVHALDGVSLSIRPGETLGLVGESGCGKTTLGRCIVRAEDPTEGQILYSGSDDAVDLAGLHGGDLRSHQREVRMIFQDPFSSLNPRMTLGQIIGEPLVTHRVATGSELQDRVAQMLRRVGLSPDYMDRYPHAFSGGQRQRVNIARALILEPKLVVADEAVSALDVSVRAQILNLLQDLQDELDLTYLFISHDLSVVQSVCDRVAVMYLGKVVEVADTQQVFDDPQHPYTEALLSAVPIADPARRGEGRRIRLSDDLPDPIDRPAGCFFHTRCRHAVAGLCDGAPPALVPTADVVDGQDDFGRHRTACLRHSELELTGIAGTQEADR

Samples

Sample ID Description Type Environment
1 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
2 2547132512 Azospira oryzae 6a3 Isolate Unclassified
3 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
4 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
5 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
6 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
7 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
8 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
14 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
19 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
20 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
21 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
28 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
29 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
30 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
31 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
32 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
33 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
34 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
35 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
36 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
37 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
38 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
41 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
42 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
43 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
44 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
45 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
46 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
47 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
48 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
49 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
50 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
51 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
52 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
53 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
54 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
55 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
56 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
57 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
58 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
59 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
60 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
61 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
62 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
63 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
64 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
65 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
66 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
79 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
83 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
84 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
85 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
86 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.57
Metatranscriptomes 2.03
Isolates 5.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.68
Nodule 0
Rhizoplane 2.7
Rhizosphere 83.78
Stem 0
Stem Tuber 0
Unclassified 12.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100008352 3300005334 Bacteria 6672
2 Ga0070710_10029514 3300005437 Bacteria 2943
3 Ga0070665_100085319 3300005548 Bacteria 3163
4 Ga0068863_100021194 3300005841 Bacteria 6204
5 Ga0081540_1002455 3300005983 Bacteria 15096
6 Ga0097621_100032740 3300006237 Bacteria 4134
7 Ga0111539_10010883 3300009094 Bacteria 11449
8 Ga0105242_10003411 3300009176 Bacteria 12356
9 Ga0105238_10000072 3300009551 Bacteria 112436
10 Ga0157375_10072998 3300013308 Bacteria 3449
11 Ga0163163_10009315 3300014325 Bacteria 8758
12 Ga0157376_10004619 3300014969 Bacteria 9593
13 Ga0207704_10017109 3300025938 Bacteria 3749
14 Ga0207665_10005853 3300025939 Bacteria 8181
15 Ga0207689_10013603 3300025942 Bacteria 6940
16 Ga0207703_10022174 3300026035 Bacteria 4978
17 Ga0207702_10041755 3300026078 Bacteria 3846
18 Ga0207675_100016032 3300026118 Bacteria 6996
19 Ga0207428_10004994 3300027907 Bacteria 12477
20 Ga0265332_10000176 3300031238 Bacteria 52656
21 Ga0307509_10000053 3300031507 Bacteria 164364
22 Ga0316575_10002286 3300031665 Bacteria 6411
23 Ga0316575_10006798 3300031665 Bacteria 4132
24 Ga0316579_10000067 3300031691 Bacteria 25952
25 Ga0316579_10000337 3300031691 Bacteria 14681
26 Ga0316579_10002286 3300031691 Bacteria 7231
27 Ga0316579_10010830 3300031691 Bacteria 3863
28 Ga0316579_10015247 3300031691 Bacteria 3334
29 Ga0316579_10015867 3300031691 Bacteria 3279
30 Ga0316576_10001873 3300031727 Bacteria 11692
31 Ga0316576_10002665 3300031727 Bacteria 10208
32 Ga0316576_10003806 3300031727 Bacteria 8927
33 Ga0316576_10012580 3300031727 Bacteria 5596
34 Ga0316576_10024311 3300031727 Bacteria 4229
35 Ga0316578_10001403 3300031728 Bacteria 9740
36 Ga0316578_10002498 3300031728 Bacteria 8103
37 Ga0316578_10006954 3300031728 Bacteria 5631
38 Ga0316578_10025104 3300031728 Bacteria 3348
39 Ga0316577_10002614 3300031733 Bacteria 8951
40 Ga0316577_10010234 3300031733 Bacteria 5058
41 Ga0316577_10010359 3300031733 Bacteria 5032
42 Ga0316585_10001261 3300032137 Bacteria 6616
43 Ga0316585_10002457 3300032137 Bacteria 4999
44 Ga0316585_10008420 3300032137 Bacteria 2993
45 Ga0316585_10009063 3300032137 Bacteria 2894
46 Ga0316580_10000149 3300032139 Bacteria 13537
47 Ga0316580_10000472 3300032139 Bacteria 9287
48 Ga0316580_10007033 3300032139 Bacteria 3337
49 Ga0316592_1003685 3300033524 Bacteria 2787
50 Ga0316588_1000718 3300033528 Bacteria 4872
51 Ga0316596_1002776 3300033541 Bacteria 3777
52 Ga0373952_0002080 3300035092 Bacteria 3606
53 Ga0316574_0008701 3300035398 Bacteria 5648
54 Ga0316574_0011988 3300035398 Bacteria 4945
55 Ga0316574_0012206 3300035398 Bacteria 4909
56 Ga0316574_0060498 3300035398 Bacteria 2378
57 Ga0316574_0079672 3300035398 Bacteria 2077
58 Ga0373935_0003537 3300035692 Bacteria 9094
59 Ga0316582_0001355 3300036647 Bacteria 10649
60 Ga0316582_0010665 3300036647 Bacteria 5042
61 Ga0316582_0031084 3300036647 Bacteria 3260
62 Ga0316584_0005152 3300036712 Bacteria 8731
63 Ga0316584_0007500 3300036712 Bacteria 7467
64 Ga0316584_0008597 3300036712 Bacteria 7039
65 Ga0316584_0018347 3300036712 Bacteria 5047
66 Ga0316584_0027957 3300036712 Bacteria 4155
67 Ga0316584_0037045 3300036712 Bacteria 3622
68 Ga0316584_0038512 3300036712 Bacteria 3557
69 Ga0316584_0052343 3300036712 Bacteria 3053
70 Ga0316581_0004204 3300037588 Bacteria 3651
71 Ga0400484_34275 3300038725 Bacteria 23521
72 Ga0400484_39025 3300038725 Bacteria 4714
73 Ga0400490_06176 3300038726 Bacteria 115887
74 Ga0400485_18935 3300038735 Bacteria 2601
75 Ga0400483_038697 3300039062 Bacteria 4967
76 Ga0400483_049966 3300039062 Bacteria 12614
77 Ga0400483_123260 3300039062 Bacteria 7530
78 Ga0400483_278094 3300039062 Bacteria 6150
79 Ga0400489_72336 3300039093 Bacteria 113152
80 Ga0400487_28669 3300039110 Bacteria 17194
81 Ga0400487_34842 3300039110 Bacteria 2323
82 Ga0400487_46744 3300039110 Bacteria 17946
83 Ga0451576_0001762 3300045051 Bacteria 35512
84 Ga0451576_0004889 3300045051 Bacteria 17122
85 Ga0495592_0002686 3300046454 Bacteria 12579
86 Ga0495592_0016241 3300046454 Bacteria 5649
87 Ga0495628_0007077 3300046516 Bacteria 9716
88 Ga0495628_0013267 3300046516 Bacteria 6930
89 Ga0495652_0001265 3300046529 Bacteria 28259
90 Ga0495640_0001782 3300046533 Bacteria 17078
91 Ga0495640_0059285 3300046533 Bacteria 2607
92 Ga0495645_0000794 3300046543 Bacteria 21665
93 Ga0495634_0006741 3300046642 Bacteria 8698
94 Ga0495657_0017543 3300046675 Bacteria 5194
95 Ga0495599_0005019 3300046678 Bacteria 7873
96 Ga0495599_0007767 3300046678 Bacteria 6509
97 Ga0495600_0007156 3300046809 Bacteria 6813
98 Ga0495600_0008646 3300046809 Bacteria 6263
99 Ga0495684_0001691 3300047471 Bacteria 17733
100 Ga0495684_0093849 3300047471 Bacteria 2272
101 Ga0496105_0013989 3300048908 Bacteria 6383
102 Ga0496108_0029921 3300048911 Bacteria 4513
103 Ga0496109_0008328 3300048912 Bacteria 8804
104 Ga0496114_0001834 3300048917 Bacteria 16097
105 Ga0501031_0022743 3300049568 Bacteria 4086
106 Ga0501032_0000464 3300049569 Bacteria 32673
107 Ga0501032_0000835 3300049569 Bacteria 25050
108 Ga0501033_0001142 3300049570 Bacteria 23980
109 Ga0501033_0002593 3300049570 Bacteria 15236
110 Ga0501033_0006581 3300049570 Bacteria 9088
111 Ga0501034_0013615 3300049571 Bacteria 8369
112 Ga0501036_0002335 3300049572 Bacteria 14827
113 Ga0501036_0026680 3300049572 Bacteria 4879
114 Ga0501036_0044021 3300049572 Bacteria 3780
115 Ga0501036_0090251 3300049572 Bacteria 2589
116 Ga0501037_0069669 3300049573 Bacteria 2560
117 Ga0501038_0000689 3300049574 Bacteria 30044
118 Ga0501038_0005128 3300049574 Bacteria 12168
119 Ga0501038_0031561 3300049574 Bacteria 4681
120 Ga0501038_0050212 3300049574 Bacteria 3605
121 Ga0501039_0033086 3300049575 Bacteria 3988
122 Ga0501039_0044755 3300049575 Bacteria 3420
123 Ga0501040_0002441 3300049576 Bacteria 11969
124 Ga0501042_0009087 3300049578 Bacteria 6608
125 Ga0501042_0027217 3300049578 Bacteria 4020
126 Ga0501043_0005791 3300049579 Bacteria 9942
127 Ga0501043_0029493 3300049579 Bacteria 4310
128 Ga0501043_0055830 3300049579 Bacteria 3102
129 Ga0501067_0051536 3300049583 Bacteria 2281
130 Ga0501074_0005927 3300049590 Bacteria 8813
131 Ga0501035_0002349 3300049822 Bacteria 18642
132 Ga0501035_0006358 3300049822 Bacteria 11109
133 Ga0501035_0013972 3300049822 Bacteria 7407
134 Ga0501044_0003017 3300049823 Bacteria 19046
135 nmdc:mga08y16_13198_c1 3300050511 Bacteria 8688
136 nmdc:mga08y16_3048_c1 3300050511 Bacteria 17314
137 Ga0495601_0039345 3300053077 Bacteria 2961
138 Ga0495595_0040380 3300053084 Bacteria 2132
139 Ga0495619_0028708 3300053085 Bacteria 3590
140 Ga0500636_0000380 3300053177 Bacteria 24363

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045051 Ga0451576_0001762 Ga0451576_0001762_33_1757 545
2 3300053084 Ga0495595_0040380 Ga0495595_0040380_23_1744 546
3 3300036647 Ga0316582_0031084 Ga0316582_0031084_101_1822 547
4 3300035398 Ga0316574_0079672 Ga0316574_0079672_335_2065 549
5 3300013308 Ga0157375_10072998 Ga0157375_100729982 553
6 3300049578 Ga0501042_0027217 Ga0501042_0027217_144_1946 568
7 3300039110 Ga0400487_34842 Ga0400487_34842_473_2272 572
8 3300039110 Ga0400487_28669 Ga0400487_28669_8256_10130 587
9 3300046454 Ga0495592_0016241 Ga0495592_0016241_3099_5177 591
10 3300046516 Ga0495628_0013267 Ga0495628_0013267_834_2912 591
11 3300046533 Ga0495640_0001782 Ga0495640_0001782_14939_17017 591
12 3300046678 Ga0495599_0007767 Ga0495599_0007767_4346_6424 591
13 3300046809 Ga0495600_0008646 Ga0495600_0008646_879_2957 591
14 3300047471 Ga0495684_0001691 Ga0495684_0001691_834_2912 591
15 3300050511 nmdc:mga08y16_13198_c1 nmdc:mga08y16_13198_c1_16_2019 596
16 3300009551 Ga0105238_10000072 Ga0105238_1000007217 605
17 3300009094 Ga0111539_10010883 Ga0111539_100108836 609
18 3300027907 Ga0207428_10004994 Ga0207428_100049946 609
19 3300050511 nmdc:mga08y16_3048_c1 nmdc:mga08y16_3048_c1_7259_9289 609
20 3300035398 Ga0316574_0008701 Ga0316574_0008701_226_2256 617
21 3300047471 Ga0495684_0093849 Ga0495684_0093849_318_2252 617
22 3300046642 Ga0495634_0006741 Ga0495634_0006741_3607_5778 620
23 3300046675 Ga0495657_0017543 Ga0495657_0017543_2998_5169 620
24 3300048908 Ga0496105_0013989 Ga0496105_0013989_4151_6217 621
25 3300038726 Ga0400490_06176 Ga0400490_06176_44919_46871 622
26 3300035398 Ga0316574_0012206 Ga0316574_0012206_2305_4320 625
27 3300035092 Ga0373952_0002080 Ga0373952_0002080_277_2241 626
28 3300031507 Ga0307509_10000053 Ga0307509_100000533 627
29 iso_pu_bacteria 2831935698 2831939336 627
30 3300036712 Ga0316584_0037045 Ga0316584_0037045_1354_3390 628
31 3300049569 Ga0501032_0000835 Ga0501032_0000835_9081_11141 629
32 3300049583 Ga0501067_0051536 Ga0501067_0051536_159_2198 629
33 3300031238 Ga0265332_10000176 Ga0265332_1000017643 630
34 3300049572 Ga0501036_0090251 Ga0501036_0090251_99_2159 630
35 3300031727 Ga0316576_10003806 Ga0316576_100038063 631
36 3300031728 Ga0316578_10002498 Ga0316578_100024984 631
37 3300045051 Ga0451576_0004889 Ga0451576_0004889_10284_12269 631
38 3300005437 Ga0070710_10029514 Ga0070710_100295142 633
39 3300025939 Ga0207665_10005853 Ga0207665_100058534 633
40 3300038725 Ga0400484_39025 Ga0400484_39025_2587_4569 633
41 3300039062 Ga0400483_038697 Ga0400483_038697_225_2207 633
42 iso_pu_bacteria 2884693830 2884701953 634
43 3300031727 Ga0316576_10012580 Ga0316576_100125802 635
44 3300031733 Ga0316577_10010359 Ga0316577_100103594 635
45 3300032137 Ga0316585_10009063 Ga0316585_100090632 635
46 3300032139 Ga0316580_10000472 Ga0316580_100004724 635
47 3300033524 Ga0316592_1003685 Ga0316592_10036852 635
48 3300033528 Ga0316588_1000718 Ga0316588_10007182 635
49 3300053177 Ga0500636_0000380 Ga0500636_0000380_10860_12884 635
50 iso_pu_bacteria 2547132512 2548849362 635
51 3300006237 Ga0097621_100032740 Ga0097621_1000327402 636
52 3300014325 Ga0163163_10009315 Ga0163163_100093154 636
53 3300026078 Ga0207702_10041755 Ga0207702_100417552 636
54 3300031691 Ga0316579_10015247 Ga0316579_100152472 636
55 3300038735 Ga0400485_18935 Ga0400485_18935_323_2314 636
56 3300048911 Ga0496108_0029921 Ga0496108_0029921_2154_4313 636
57 3300048912 Ga0496109_0008328 Ga0496109_0008328_1456_3615 636
58 iso_pu_bacteria 2526164512 2526212890 636
59 iso_pu_bacteria 2895442618 2895444113 636
60 3300039062 Ga0400483_049966 Ga0400483_049966_1300_3294 637
61 3300039110 Ga0400487_46744 Ga0400487_46744_9832_11841 637
62 3300046454 Ga0495592_0002686 Ga0495592_0002686_8005_10002 638
63 3300046516 Ga0495628_0007077 Ga0495628_0007077_4106_6103 638
64 3300046529 Ga0495652_0001265 Ga0495652_0001265_9259_11256 638
65 3300046533 Ga0495640_0059285 Ga0495640_0059285_285_2282 638
66 3300046543 Ga0495645_0000794 Ga0495645_0000794_3098_5095 638
67 3300046678 Ga0495599_0005019 Ga0495599_0005019_2884_4881 638
68 3300046809 Ga0495600_0007156 Ga0495600_0007156_4443_6440 638
69 3300053077 Ga0495601_0039345 Ga0495601_0039345_667_2664 638
70 3300053085 Ga0495619_0028708 Ga0495619_0028708_1079_3076 638
71 3300039062 Ga0400483_278094 Ga0400483_278094_836_2839 639
72 3300036712 Ga0316584_0018347 Ga0316584_0018347_692_2698 640
73 3300039062 Ga0400483_123260 Ga0400483_123260_3047_5059 640
74 3300039093 Ga0400489_72336 Ga0400489_72336_88716_90776 640
75 3300031691 Ga0316579_10002286 Ga0316579_100022867 641
76 3300031727 Ga0316576_10024311 Ga0316576_100243112 641
77 3300032137 Ga0316585_10001261 Ga0316585_100012612 641
78 3300032137 Ga0316585_10008420 Ga0316585_100084202 641
79 3300033541 Ga0316596_1002776 Ga0316596_10027761 641
80 3300035398 Ga0316574_0060498 Ga0316574_0060498_359_2365 641
81 3300036712 Ga0316584_0007500 Ga0316584_0007500_4449_6464 641
82 3300036712 Ga0316584_0027957 Ga0316584_0027957_2114_4120 641
83 3300049574 Ga0501038_0031561 Ga0501038_0031561_751_2808 641
84 3300031665 Ga0316575_10002286 Ga0316575_100022863 642
85 3300031691 Ga0316579_10000337 Ga0316579_1000033712 642
86 3300031727 Ga0316576_10001873 Ga0316576_100018735 642
87 3300031727 Ga0316576_10002665 Ga0316576_100026659 642
88 3300031733 Ga0316577_10002614 Ga0316577_100026142 642
89 3300032137 Ga0316585_10002457 Ga0316585_100024572 642
90 3300032139 Ga0316580_10000149 Ga0316580_100001495 642
91 3300035398 Ga0316574_0011988 Ga0316574_0011988_2299_4338 642
92 3300035692 Ga0373935_0003537 Ga0373935_0003537_2697_4721 642
93 3300036712 Ga0316584_0005152 Ga0316584_0005152_6074_8113 642
94 3300036712 Ga0316584_0008597 Ga0316584_0008597_2453_4510 642
95 3300009176 Ga0105242_10003411 Ga0105242_100034119 643
96 3300036647 Ga0316582_0010665 Ga0316582_0010665_1336_3372 643
97 3300049568 Ga0501031_0022743 Ga0501031_0022743_259_2382 643
98 3300049569 Ga0501032_0000464 Ga0501032_0000464_23417_25546 643
99 3300049570 Ga0501033_0001142 Ga0501033_0001142_6974_9097 643
100 3300049570 Ga0501033_0002593 Ga0501033_0002593_5430_7571 643
101 3300049570 Ga0501033_0006581 Ga0501033_0006581_2165_4294 643
102 3300049571 Ga0501034_0013615 Ga0501034_0013615_3948_6077 643
103 3300049572 Ga0501036_0002335 Ga0501036_0002335_7046_9181 643
104 3300049572 Ga0501036_0026680 Ga0501036_0026680_2589_4718 643
105 3300049572 Ga0501036_0044021 Ga0501036_0044021_1492_3615 643
106 3300049573 Ga0501037_0069669 Ga0501037_0069669_285_2426 643
107 3300049574 Ga0501038_0000689 Ga0501038_0000689_20966_23089 643
108 3300049574 Ga0501038_0005128 Ga0501038_0005128_7046_9181 643
109 3300049574 Ga0501038_0050212 Ga0501038_0050212_956_3097 643
110 3300049575 Ga0501039_0033086 Ga0501039_0033086_778_2907 643
111 3300049575 Ga0501039_0044755 Ga0501039_0044755_222_2345 643
112 3300049576 Ga0501040_0002441 Ga0501040_0002441_7128_9257 643
113 3300049578 Ga0501042_0009087 Ga0501042_0009087_1763_3892 643
114 3300049579 Ga0501043_0005791 Ga0501043_0005791_3231_5360 643
115 3300049579 Ga0501043_0029493 Ga0501043_0029493_172_2307 643
116 3300049579 Ga0501043_0055830 Ga0501043_0055830_814_2937 643
117 3300049822 Ga0501035_0002349 Ga0501035_0002349_6909_9032 643
118 3300049822 Ga0501035_0006358 Ga0501035_0006358_7193_9328 643
119 3300049822 Ga0501035_0013972 Ga0501035_0013972_3379_5508 643
120 3300049823 Ga0501044_0003017 Ga0501044_0003017_7449_9584 643
121 3300031728 Ga0316578_10025104 Ga0316578_100251041 644
122 3300048917 Ga0496114_0001834 Ga0496114_0001834_13786_15933 644
123 3300038725 Ga0400484_34275 Ga0400484_34275_269_2299 645
124 3300031665 Ga0316575_10006798 Ga0316575_100067981 646
125 3300031691 Ga0316579_10000067 Ga0316579_1000006717 646
126 3300031691 Ga0316579_10010830 Ga0316579_100108301 646
127 3300031691 Ga0316579_10015867 Ga0316579_100158672 646
128 3300031728 Ga0316578_10001403 Ga0316578_100014036 646
129 3300031728 Ga0316578_10006954 Ga0316578_100069543 646
130 3300031733 Ga0316577_10010234 Ga0316577_100102342 646
131 3300032139 Ga0316580_10007033 Ga0316580_100070332 646
132 3300036647 Ga0316582_0001355 Ga0316582_0001355_4622_6655 646
133 3300036712 Ga0316584_0038512 Ga0316584_0038512_1360_3393 646
134 3300036712 Ga0316584_0052343 Ga0316584_0052343_454_2487 646
135 3300037588 Ga0316581_0004204 Ga0316581_0004204_60_2093 646
136 iso_pu_bacteria 2574179768 2574431497 648
137 iso_pu_bacteria 2887443736 2887447068 649
138 3300049590 Ga0501074_0005927 Ga0501074_0005927_447_2519 655
139 iso_pu_bacteria 2837268691 2837270838 657
140 3300005983 Ga0081540_1002455 Ga0081540_10024552 658
141 3300005334 Ga0068869_100008352 Ga0068869_1000083522 672
142 3300005548 Ga0070665_100085319 Ga0070665_1000853192 672
143 3300005841 Ga0068863_100021194 Ga0068863_1000211944 672
144 3300014969 Ga0157376_10004619 Ga0157376_100046192 672
145 3300025938 Ga0207704_10017109 Ga0207704_100171092 672
146 3300025942 Ga0207689_10013603 Ga0207689_100136032 672
147 3300026035 Ga0207703_10022174 Ga0207703_100221742 672
148 3300026118 Ga0207675_100016032 Ga0207675_1000160322 672

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08352

oligo_HPY

Oligopeptide/dipeptide transporter, C-terminal region

255

323

0.96

PF00005

ABC_tran

ABC transporter

417

573

0.93

PF00005

ABC_tran

ABC transporter

38

204

0.93

PF08352

oligo_HPY

Oligopeptide/dipeptide transporter, C-terminal region

624

692

0.9

PF13304

AAA_21

AAA domain, putative AbiEii toxin, Type IV TA system

142

240

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
4fwi-assembly1.cif.gz_B crystal structure of the nucleotide-binding domain of a dipeptide abc transporter 0.9429 30 349
4fwi-assembly1.cif.gz_B crystal structure of the nucleotide-binding domain of a dipeptide abc transporter 0.94 30 349
7ch8-assembly1.cif.gz_J cryo-em structure of p.aeruginosa mlafebd with adp-v 0.9393 30 282
6cvl-assembly1.cif.gz_C crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein 0.9383 378 633
7z17-assembly1.cif.gz_J e. coli c-p lyase bound to a phnk abc dimer in an open conformation 0.9352 376 634
ID Description Score Start End Superfamily
af_P75796_311_605_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9913 376 636 3.40.50.300
af_P33916_272_529_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9841 376 632 3.40.50.300
af_Q2G1F8_275_530_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9753 378 632 3.40.50.300
af_Q2FZR1_3_327_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9732 31 347 3.40.50.300
af_P9WQJ5_2_332_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9716 30 345 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A4Y9NCT0-F1-model_v4 deleted 0.9826 402 634
AF-A0A0L8EX25-F1-model_v4 deleted 0.9814 31 351
AF-A0A3N5SIR2-F1-model_v4 ABC transporter ATP-binding protein 0.9814 31 319 GO:0005524
GO:0015833
GO:0016887
AF-A0A643FZ13-F1-model_v4 Glutathione import ATP-binding protein GsiA (EC 7.4.2.10) 0.9789 376 636 GO:0005524
GO:0005886
GO:0016887
GO:0055085
AF-A0A1M5YS44-F1-model_v4 Nickel transport system ATP-binding protein 0.9755 31 285 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
83.33 0.8 High
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Predicted Structure (AlphaFold2)

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