F204316

General Info

Members Datasets Scaffolds Average Seq Length
148 95 296 411

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0006139|Ga0501031_0006139_6332_7630
Length 432
Sequence MSKENPSVAGHIQDRWYKTETGPDGKDRRVKTERHGTGMRYRARYVGPDGTEKSKSFPDRQKRLAEQWLAQVEADMSRGQYIDPSASRITFQQYGEKWLASQTTDATTRASVSTQLRLHAFPYIGSRPLGSFQPAHIREWVSALEKALPASSYRRVIFSSVSAVFSAAVDDKHLSSNPCRARSVRSPKSTPPRVQPWPASRVFAVRAALPEQYRAMVDLGGGCGLRQGEIFGVAADALDYGTGWLHVGCQVKVANGHLVFDLPKRDKERDVPLPERVAHMLKEHAEKHPPVEITLPWKRPDGPMVTKRLLFTRVDGRGAVRSNDFNTRVWKPALTAAGVLPVPEKGKRHKASREDGMHALRHFYASALLAAGENIKALSHYLGHDDPGFTLRVYTHLMPSSDGRARRAVDGVYAALEAAARTPDGPQTAQGS

Samples

Sample ID Description Type Environment
1 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
8 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
9 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
10 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
11 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
12 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
13 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
14 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
15 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
16 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
17 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
18 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
19 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
20 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
21 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
22 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
23 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
24 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
25 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
26 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
27 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
28 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
29 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
30 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
31 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
32 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
33 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
34 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
35 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
36 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
37 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
38 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
39 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
40 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
41 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
42 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
43 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
44 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
45 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
46 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
47 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
48 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
49 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
50 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
51 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
52 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
55 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
58 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
60 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
61 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
63 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
64 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
65 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
66 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
67 2643221578 Streptomyces sp. Root63 Isolate Unclassified
68 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
69 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
70 2643221714 Streptomyces sp. Root264 Isolate Unclassified
71 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
72 2808606448 Streptomyces sp. 193411 Isolate Unclassified
73 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
74 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
75 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
76 2862574272 Streptomyces sp. AcE210 Isolate Nodule
77 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
78 2867428634 Streptomyces sp. RP5T Isolate Unclassified
79 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
80 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
81 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
82 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
83 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
84 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
85 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
86 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
87 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
88 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
89 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
90 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
91 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
92 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
93 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
94 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
95 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.35
Metatranscriptomes 0.68
Isolates 22.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.7
Nodule 0.68
Rhizoplane 0.68
Rhizosphere 69.59
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501031_0006139 3300049568 Bacteria 7842
2 rootH2_10098075 3300003320 Bacteria 1846
3 rootL2_10213417 3300003322 Bacteria 1393
4 rootH1_10041822 3300003323 Bacteria 1893
5 Ga0006562J51391_1156319 3300003578 Bacteria 3620
6 Ga0081455_10018817 3300005937 Bacteria 6552
7 Ga0075431_100005870 3300006847 Bacteria 12153
8 Ga0207426_1001850 3300025302 Bacteria 15549
9 Ga0207426_1025168 3300025302 Bacteria 2008
10 Ga0307517_10011193 3300028786 Bacteria 12451
11 Ga0307517_10022660 3300028786 Bacteria 7857
12 Ga0307509_10005234 3300031507 Bacteria 18181
13 Ga0307509_10006410 3300031507 Bacteria 15848
14 Ga0307509_10014880 3300031507 Bacteria 9117
15 Ga0307508_10063875 3300031616 Bacteria 3247
16 Ga0307514_10008016 3300031649 Bacteria 9039
17 Ga0307514_10024575 3300031649 Bacteria 4875
18 Ga0307514_10035240 3300031649 Bacteria 3984
19 Ga0307514_10050024 3300031649 Bacteria 3247
20 Ga0307514_10060665 3300031649 Bacteria 2884
21 Ga0307516_10259675 3300031730 Bacteria 1428
22 Ga0307507_10025720 3300033179 Bacteria 6372
23 Ga0307507_10101239 3300033179 Bacteria 2410
24 Ga0307507_10105756 3300033179 Bacteria 2328
25 Ga0307507_10165706 3300033179 Bacteria 1620
26 Ga0307510_10086006 3300033180 Bacteria 3018
27 Ga0307510_10197938 3300033180 Bacteria 1548
28 Ga0451853_0278400 3300041512 Bacteria 2960
29 Ga0451853_1420388 3300041512 Bacteria 3817
30 Ga0495603_0019878 3300046455 Bacteria 4067
31 Ga0495603_0041478 3300046455 Bacteria 2752
32 Ga0495629_0012954 3300046459 Bacteria 6029
33 Ga0495651_0001488 3300046462 Bacteria 18126
34 Ga0495651_0174840 3300046462 Bacteria 1525
35 Ga0495605_0001984 3300046474 Bacteria 12958
36 Ga0495585_0034037 3300046492 Bacteria 2881
37 Ga0495585_0090711 3300046492 Bacteria 1646
38 Ga0495594_0107928 3300046499 Bacteria 1568
39 Ga0495594_0114004 3300046499 Bacteria 1525
40 Ga0495607_0024352 3300046501 Bacteria 3775
41 Ga0495583_0004435 3300046506 Bacteria 10047
42 Ga0495583_0008234 3300046506 Bacteria 6395
43 Ga0495606_0022814 3300046507 Bacteria 4549
44 Ga0495616_0053153 3300046513 Bacteria 2014
45 Ga0495620_0003271 3300046515 Bacteria 9287
46 Ga0495628_0151327 3300046516 Bacteria 1767
47 Ga0495652_0140531 3300046529 Bacteria 1899
48 Ga0495640_0020843 3300046533 Bacteria 4817
49 Ga0495597_0023394 3300046542 Bacteria 2857
50 Ga0495668_0003453 3300046616 Bacteria 11820
51 Ga0495611_0000574 3300046648 Bacteria 21210
52 Ga0495625_0004168 3300046660 Bacteria 13777
53 Ga0495625_0008311 3300046660 Bacteria 8869
54 Ga0495588_0005737 3300046674 Bacteria 5541
55 Ga0495588_0006482 3300046674 Bacteria 5275
56 Ga0495657_0014102 3300046675 Bacteria 5873
57 Ga0495649_0082803 3300046694 Bacteria 1714
58 Ga0495589_0007258 3300046794 Bacteria 5804
59 Ga0495589_0054546 3300046794 Bacteria 1971
60 Ga0495660_0049443 3300046810 Bacteria 2295
61 Ga0495604_0060136 3300047317 Bacteria 2910
62 Ga0495604_0114052 3300047317 Bacteria 1966
63 Ga0495604_0144392 3300047317 Bacteria 1697
64 Ga0495604_0169716 3300047317 Bacteria 1535
65 Ga0495676_0013018 3300047321 Bacteria 7487
66 Ga0495676_0041887 3300047321 Bacteria 3765
67 Ga0495676_0043581 3300047321 Bacteria 3669
68 Ga0495676_0196449 3300047321 Bacteria 1404
69 Ga0495683_0012071 3300047323 Bacteria 4541
70 Ga0495683_0014709 3300047323 Bacteria 4076
71 Ga0495683_0074591 3300047323 Bacteria 1662
72 Ga0495687_004016 3300047443 Bacteria 10219
73 Ga0495687_050714 3300047443 Bacteria 1766
74 Ga0495684_0216556 3300047471 Bacteria 1406
75 Ga0495593_0018688 3300047673 Bacteria 3892
76 Ga0495593_0067555 3300047673 Bacteria 1861
77 Ga0495614_0001726 3300048089 Bacteria 9554
78 Ga0495614_0007878 3300048089 Bacteria 4737
79 Ga0495614_0063165 3300048089 Bacteria 1591
80 Ga0495626_0024082 3300048091 Bacteria 2987
81 Ga0496109_0016272 3300048912 Bacteria 6501
82 Ga0501032_0007806 3300049569 Bacteria 7800
83 Ga0501032_0022755 3300049569 Bacteria 4342
84 Ga0501032_0133390 3300049569 Bacteria 1637
85 Ga0501033_0004941 3300049570 Bacteria 10603
86 Ga0501033_0168853 3300049570 Bacteria 1572
87 Ga0501034_0015163 3300049571 Bacteria 7921
88 Ga0501034_0232940 3300049571 Bacteria 1790
89 Ga0501036_0139624 3300049572 Bacteria 2045
90 Ga0501036_0342985 3300049572 Bacteria 1247
91 Ga0501037_0007338 3300049573 Bacteria 8061
92 Ga0501038_0015704 3300049574 Bacteria 6881
93 Ga0501043_0009376 3300049579 Bacteria 7689
94 Ga0501043_0143243 3300049579 Bacteria 1871
95 Ga0501046_0047537 3300049580 Bacteria 3402
96 Ga0501047_0013322 3300049581 Bacteria 7789
97 Ga0501047_0186019 3300049581 Bacteria 1942
98 Ga0501047_0196158 3300049581 Bacteria 1881
99 Ga0501047_0284648 3300049581 Bacteria 1497
100 Ga0501048_0007793 3300049582 Bacteria 8119
101 Ga0501070_0009912 3300049586 Bacteria 8053
102 Ga0501074_0015736 3300049590 Bacteria 5499
103 Ga0501035_0004872 3300049822 Bacteria 12731
104 Ga0501035_0012502 3300049822 Bacteria 7842
105 Ga0501035_0030856 3300049822 Bacteria 4883
106 Ga0501035_0032763 3300049822 Bacteria 4726
107 Ga0501035_0065262 3300049822 Bacteria 3234
108 Ga0501044_0000886 3300049823 Bacteria 36088
109 Ga0501044_0016836 3300049823 Bacteria 7842
110 Ga0501044_0190098 3300049823 Bacteria 2016
111 Ga0501044_0241837 3300049823 Bacteria 1748
112 nmdc:mga06r32_4699_c1 3300050510 Bacteria 12269
113 Ga0500578_0116832 3300053086 Bacteria 1679
114 Ga0500578_0154951 3300053086 Bacteria 1425
115 2554258501 2554235005 Bacteria 6457341
116 2585299286 2582581312 Bacteria 7308206
117 2643899385 2643221578 Bacteria 9213798
118 2644406879 2643221673 Bacteria 9196637
119 2644436003 2643221678 Bacteria 9540101
120 2644628188 2643221714 Bacteria 9015452
121 2644628722 2643221714 Bacteria 9015452
122 2804844563 2802429296 Bacteria 7227771
123 2809232342 2808606448 Bacteria 8656184
124 2811844622 2808606982 Bacteria 7791042
125 2811845504 2808606982 Bacteria 7791042
126 2862184801 2862178590 Bacteria 8583590
127 2862291727 2862290372 Bacteria 7471434
128 2862582842 2862574272 Bacteria 10567477
129 2863408892 2863404153 Bacteria 9672205
130 2867431164 2867428634 Bacteria 9590268
131 2877678780 2877676314 Bacteria 9512378
132 2918506767 2918501144 Bacteria 8668083
133 2947227100 2947224130 Bacteria 9938529
134 2954705431 2954701450 Bacteria 10834262
135 2954714042 2954711539 Bacteria 10867210
136 2954744352 2954740390 Bacteria 10229294
137 2954756681 2954749733 Bacteria 10366972
138 2954763324 2954759201 Bacteria 9358192
139 2990062469 2990059506 Bacteria 9321252
140 2997606455 2997600082 Bacteria 9896405
141 3006490872 3006486233 Bacteria 8157040
142 3006500885 3006493962 Bacteria 8825450
143 8048129113 8048127548 Bacteria 11053136
144 8048383302 8048379754 Bacteria 11877923
145 8048407765 8048406513 Bacteria 8936924
146 8048414407 8048406513 Bacteria 8936924
147 8056450718 8056447290 Bacteria 7680491
148 8056672023 8056667051 Bacteria 6953971
149 Ga0501031_0006139
150 rootH2_10098075
151 rootL2_10213417
152 rootH1_10041822
153 Ga0006562J51391_1156319
154 Ga0081455_10018817
155 Ga0075431_100005870
156 Ga0207426_1001850
157 Ga0207426_1025168
158 Ga0307517_10011193
159 Ga0307517_10022660
160 Ga0307509_10005234
161 Ga0307509_10006410
162 Ga0307509_10014880
163 Ga0307508_10063875
164 Ga0307514_10008016
165 Ga0307514_10024575
166 Ga0307514_10035240
167 Ga0307514_10050024
168 Ga0307514_10060665
169 Ga0307516_10259675
170 Ga0307507_10025720
171 Ga0307507_10101239
172 Ga0307507_10105756
173 Ga0307507_10165706
174 Ga0307510_10086006
175 Ga0307510_10197938
176 Ga0451853_0278400
177 Ga0451853_1420388
178 Ga0495603_0019878
179 Ga0495603_0041478
180 Ga0495629_0012954
181 Ga0495651_0001488
182 Ga0495651_0174840
183 Ga0495605_0001984
184 Ga0495585_0034037
185 Ga0495585_0090711
186 Ga0495594_0107928
187 Ga0495594_0114004
188 Ga0495607_0024352
189 Ga0495583_0004435
190 Ga0495583_0008234
191 Ga0495606_0022814
192 Ga0495616_0053153
193 Ga0495620_0003271
194 Ga0495628_0151327
195 Ga0495652_0140531
196 Ga0495640_0020843
197 Ga0495597_0023394
198 Ga0495668_0003453
199 Ga0495611_0000574
200 Ga0495625_0004168
201 Ga0495625_0008311
202 Ga0495588_0005737
203 Ga0495588_0006482
204 Ga0495657_0014102
205 Ga0495649_0082803
206 Ga0495589_0007258
207 Ga0495589_0054546
208 Ga0495660_0049443
209 Ga0495604_0060136
210 Ga0495604_0114052
211 Ga0495604_0144392
212 Ga0495604_0169716
213 Ga0495676_0013018
214 Ga0495676_0041887
215 Ga0495676_0043581
216 Ga0495676_0196449
217 Ga0495683_0012071
218 Ga0495683_0014709
219 Ga0495683_0074591
220 Ga0495687_004016
221 Ga0495687_050714
222 Ga0495684_0216556
223 Ga0495593_0018688
224 Ga0495593_0067555
225 Ga0495614_0001726
226 Ga0495614_0007878
227 Ga0495614_0063165
228 Ga0495626_0024082
229 Ga0496109_0016272
230 Ga0501032_0007806
231 Ga0501032_0022755
232 Ga0501032_0133390
233 Ga0501033_0004941
234 Ga0501033_0168853
235 Ga0501034_0015163
236 Ga0501034_0232940
237 Ga0501036_0139624
238 Ga0501036_0342985
239 Ga0501037_0007338
240 Ga0501038_0015704
241 Ga0501043_0009376
242 Ga0501043_0143243
243 Ga0501046_0047537
244 Ga0501047_0013322
245 Ga0501047_0186019
246 Ga0501047_0196158
247 Ga0501047_0284648
248 Ga0501048_0007793
249 Ga0501070_0009912
250 Ga0501074_0015736
251 Ga0501035_0004872
252 Ga0501035_0012502
253 Ga0501035_0030856
254 Ga0501035_0032763
255 Ga0501035_0065262
256 Ga0501044_0000886
257 Ga0501044_0016836
258 Ga0501044_0190098
259 Ga0501044_0241837
260 nmdc:mga06r32_4699_c1
261 Ga0500578_0116832
262 Ga0500578_0154951
263 2554258501
264 2585299286
265 2643899385
266 2644406879
267 2644436003
268 2644628188
269 2644628722
270 2804844563
271 2809232342
272 2811844622
273 2811845504
274 2862184801
275 2862291727
276 2862582842
277 2863408892
278 2867431164
279 2877678780
280 2918506767
281 2947227100
282 2954705431
283 2954714042
284 2954744352
285 2954756681
286 2954763324
287 2990062469
288 2997606455
289 3006490872
290 3006500885
291 8048129113
292 8048383302
293 8048407765
294 8048414407
295 8056450718
296 8056672023

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14659

Phage_int_SAM_3

Phage integrase, N-terminal SAM-like domain

90

144

0.97

PF22022

Phage_int_M

Phage integrase central domain

91

183

0.92

PF00589

Phage_integrase

Phage integrase family

200

400

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
2kj9-assembly1.cif.gz_A nmr structure of intb phage-integrase-like protein fragment 90-199 from erwinia carotova subsp. atroseptica: northeast structural genomics consortium target ewr217e 0.8601 82 178
2kd1-assembly1.cif.gz_A solution nmr structure of the integrase-like domain from bacillus cereus ordered locus bc_1272. northeast structural genomics consortium target bcr268f 0.8551 75 184
5dor-assembly2.cif.gz_C p2 integrase catalytic domain in space group p21 0.8185 188 402
5dor-assembly1.cif.gz_A p2 integrase catalytic domain in space group p21 0.8143 190 402
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.8114 83 180
ID Description Score Start End Superfamily
af_P9WMB3_168_370_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.865 186 403 1.10.443.10
2kj9A00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8601 82 178 1.10.150.130
2kd1A00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8551 75 184 1.10.150.130
af_P76168_47_165_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8505 79 178 1.10.150.130
af_P32053_96_209_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8387 78 181 1.10.150.130
ID Description Score Start End GO Terms
AF-A0A4T0V213-F1-model_v4 Site-specific integrase 0.9273 139 413 GO:0003677
GO:0006310
GO:0015074
AF-A0A7G1P0T4-F1-model_v4 Tyr recombinase domain-containing protein 0.926 194 410 GO:0003677
GO:0006310
GO:0015074
AF-A0A209CVG3-F1-model_v4 deleted 0.9135 57 420
AF-A0A559U6N8-F1-model_v4 deleted 0.9123 72 407
AF-A0A841DFF0-F1-model_v4 Integrase 0.9061 122 408 GO:0003677
GO:0006310
GO:0015074

Map