F204160

General Info

Members Datasets Scaffolds Average Seq Length
148 109 296 155

Family's Representative Sequence

Representative Sequence 3300046616|Ga0495668_0496362|Ga0495668_0496362_47_562
Length 171
Sequence VCVSARHDPPVTGIQDRLDALGIVLPGPYPPHEPLDAVVLHGGRARTSGQLPRDHDGALVHPGVLGAPHEQGGVTVEQGADAARWCALNALSVLRAELGDLDRIERVLTVLGFVASAPRFAQQPAVVDGASGLLHEVFGPAGRHSRSAVGVAALPRGGAVEIEVEVALREE

Samples

Sample ID Description Type Environment
1 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
17 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
27 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
30 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
31 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
38 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
39 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
42 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
47 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
48 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
49 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
50 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
51 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
52 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
53 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
56 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
57 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
58 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
59 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
60 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
61 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
62 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
63 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
64 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
65 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
66 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
67 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
68 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
69 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
70 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
71 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
72 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
73 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
74 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
75 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
76 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
77 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
78 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
79 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
80 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
81 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
96 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
97 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
98 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
99 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
102 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
105 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
106 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
107 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.68
Nodule 0
Rhizoplane 21.62
Rhizosphere 76.35
Stem 0
Stem Tuber 0
Unclassified 16.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495668_0496362 3300046616 Unclassified 673
2 Ga0070683_100360799 3300005329 Bacteria 1384
3 Ga0068868_100111949 3300005338 Unclassified 2219
4 Ga0070689_100507574 3300005340 Bacteria 1034
5 Ga0070674_100837006 3300005356 Bacteria 797
6 Ga0070674_101723861 3300005356 Bacteria 567
7 Ga0070673_100711587 3300005364 Bacteria 923
8 Ga0070713_100317055 3300005436 Bacteria 1439
9 Ga0070711_100508511 3300005439 Bacteria 994
10 Ga0070711_100650136 3300005439 Bacteria 884
11 Ga0070681_10837063 3300005458 Bacteria 838
12 Ga0070679_101547811 3300005530 Bacteria 610
13 Ga0070672_100992122 3300005543 Bacteria 744
14 Ga0070693_100085561 3300005547 Bacteria 1890
15 Ga0070665_101301398 3300005548 Unclassified 737
16 Ga0070704_100639447 3300005549 Bacteria 938
17 Ga0068859_102000948 3300005617 Bacteria 640
18 Ga0068866_10230359 3300005718 Bacteria 1123
19 Ga0068851_10420491 3300005834 Unclassified 789
20 Ga0068860_100815083 3300005843 Bacteria 947
21 Ga0081539_10009056 3300005985 Bacteria 8440
22 Ga0070717_10743929 3300006028 Unclassified 891
23 Ga0075434_100293138 3300006871 Bacteria 1647
24 Ga0097620_102001153 3300006931 Bacteria 640
25 Ga0105240_11692204 3300009093 Bacteria 660
26 Ga0105245_10864418 3300009098 Bacteria 945
27 Ga0105238_10570306 3300009551 Bacteria 1137
28 Ga0105246_10977190 3300011119 Bacteria 765
29 Ga0105246_11083223 3300011119 Unclassified 731
30 Ga0163162_12349404 3300013306 Bacteria 613
31 Ga0157375_10176683 3300013308 Bacteria 2285
32 Ga0182008_10370837 3300014497 Bacteria 763
33 Ga0213876_10069495 3300021384 Bacteria 1860
34 Ga0207663_10473168 3300025916 Bacteria 969
35 Ga0207687_10492646 3300025927 Unclassified 1022
36 Ga0207670_10438711 3300025936 Bacteria 1051
37 Ga0207651_10167847 3300025960 Bacteria 1728
38 Ga0207677_10050624 3300026023 Bacteria 2811
39 Ga0207677_10329207 3300026023 Unclassified 1272
40 Ga0268266_10553191 3300028379 Bacteria 1103
41 Ga0265319_1044498 3300028563 Archaea 1487
42 Ga0265334_10023375 3300028573 Unclassified 2513
43 Ga0265322_10043879 3300028654 Unclassified 1273
44 Ga0265338_10000822 3300028800 Bacteria 52358
45 Ga0265328_10131281 3300031239 Bacteria 938
46 Ga0265325_10003138 3300031241 Bacteria 10897
47 Ga0265339_10003370 3300031249 Bacteria 11184
48 Ga0265331_10012139 3300031250 Bacteria 4681
49 Ga0265327_10012672 3300031251 Bacteria 5668
50 Ga0265327_10027310 3300031251 Bacteria 3288
51 Ga0265327_10097122 3300031251 Bacteria 1428
52 Ga0265313_10001815 3300031595 Bacteria 19508
53 Ga0265314_10215965 3300031711 Bacteria 1123
54 Ga0307407_10578096 3300031903 Bacteria 834
55 Ga0307415_100559417 3300032126 Bacteria 1011
56 Ga0373926_0387982 3300035083 Unclassified 551
57 Ga0373935_0508441 3300035692 Bacteria 875
58 Ga0373933_0442192 3300035724 Bacteria 850
59 Ga0373947_0117373 3300035725 Bacteria 1688
60 Ga0373925_0049674 3300037068 Bacteria 3127
61 Ga0436365_1756536 3300039437 Bacteria 926
62 Ga0436362_0067808 3300039453 Bacteria 1439
63 Ga0495603_0837242 3300046455 Bacteria 524
64 Ga0495629_0092192 3300046459 Bacteria 2115
65 Ga0495629_0379930 3300046459 Bacteria 961
66 Ga0495629_0702674 3300046459 Unclassified 671
67 Ga0495653_0108609 3300046463 Bacteria 1998
68 Ga0495662_0251220 3300046476 Bacteria 871
69 Ga0495608_0268953 3300046511 Bacteria 1060
70 Ga0495630_0341025 3300046517 Bacteria 1146
71 Ga0495652_0711327 3300046529 Unclassified 675
72 Ga0495586_0299484 3300046535 Bacteria 921
73 Ga0495645_0472140 3300046543 Unclassified 788
74 Ga0495604_0225268 3300047317 Bacteria 1289
75 Ga0495674_0696352 3300047319 Unclassified 798
76 Ga0495672_0005231 3300047320 Bacteria 10337
77 Ga0495680_0317449 3300047322 Unclassified 1091
78 Ga0495680_0506463 3300047322 Bacteria 819
79 Ga0495684_0410945 3300047471 Unclassified 948
80 Ga0496100_0015540 3300048903 Bacteria 4447
81 Ga0496101_0019519 3300048904 Bacteria 4628
82 Ga0496102_0034009 3300048905 Bacteria 4584
83 Ga0496104_0047428 3300048907 Bacteria 4049
84 Ga0496104_0979818 3300048907 Unclassified 750
85 Ga0496104_1580216 3300048907 Bacteria 559
86 Ga0496105_0177991 3300048908 Bacteria 1742
87 Ga0496105_0281997 3300048908 Bacteria 1339
88 Ga0496105_0639606 3300048908 Unclassified 822
89 Ga0496106_0060295 3300048909 Bacteria 2876
90 Ga0496107_0319350 3300048910 Bacteria 1156
91 Ga0496107_0426108 3300048910 Bacteria 986
92 Ga0496108_0136771 3300048911 Bacteria 2109
93 Ga0496108_0155255 3300048911 Unclassified 1976
94 Ga0496108_1335594 3300048911 Bacteria 602
95 Ga0496109_0069201 3300048912 Bacteria 3237
96 Ga0496109_0087839 3300048912 Bacteria 2872
97 Ga0496109_0111265 3300048912 Bacteria 2547
98 Ga0496109_0383649 3300048912 Bacteria 1327
99 Ga0496109_1141138 3300048912 Bacteria 716
100 Ga0496110_0028603 3300048913 Bacteria 4790
101 Ga0496110_0257339 3300048913 Bacteria 1589
102 Ga0496110_0559803 3300048913 Bacteria 1039
103 Ga0496111_0238007 3300048914 Bacteria 1352
104 Ga0496111_1097495 3300048914 Bacteria 567
105 Ga0496112_0007643 3300048915 Bacteria 9613
106 Ga0496112_0012238 3300048915 Bacteria 7877
107 Ga0496113_0377819 3300048916 Unclassified 1137
108 Ga0496113_1558205 3300048916 Bacteria 509
109 Ga0496114_0743591 3300048917 Bacteria 858
110 Ga0496114_1801504 3300048917 Unclassified 500
111 Ga0496115_0993855 3300048918 Bacteria 642
112 Ga0501031_0169438 3300049568 Bacteria 1427
113 Ga0501032_0041717 3300049569 Bacteria 3115
114 Ga0501033_0394320 3300049570 Bacteria 966
115 Ga0501034_0007153 3300049571 Bacteria 11911
116 Ga0501034_0021704 3300049571 Bacteria 6542
117 Ga0501037_0006487 3300049573 Bacteria 8557
118 Ga0501037_0760437 3300049573 Bacteria 642
119 Ga0501038_0015981 3300049574 Bacteria 6819
120 Ga0501043_0040791 3300049579 Bacteria 3648
121 Ga0501047_0022951 3300049581 Bacteria 5989
122 Ga0501047_0134161 3300049581 Bacteria 2356
123 Ga0501048_0228935 3300049582 Bacteria 1319
124 Ga0501068_0109437 3300049584 Bacteria 1717
125 Ga0501068_0239973 3300049584 Unclassified 1153
126 Ga0501070_0009375 3300049586 Bacteria 8279
127 Ga0501070_0015191 3300049586 Bacteria 6481
128 Ga0501072_0474390 3300049588 Bacteria 990
129 Ga0501074_0032866 3300049590 Bacteria 3759
130 Ga0501079_0419329 3300049741 Bacteria 1051
131 Ga0501080_0022358 3300049742 Bacteria 5859
132 Ga0501080_0068193 3300049742 Bacteria 3309
133 Ga0501080_0668374 3300049742 Unclassified 918
134 Ga0501083_0098547 3300049744 Bacteria 1928
135 Ga0501083_0331471 3300049744 Bacteria 990
136 Ga0501035_0059754 3300049822 Bacteria 3395
137 Ga0501044_0001716 3300049823 Bacteria 25671
138 Ga0501044_0405142 3300049823 Bacteria 1276
139 nmdc:mga0n895_531487_c1 3300050512 Bacteria 1183
140 Ga0495601_0108500 3300053077 Bacteria 1796
141 Ga0495601_0169096 3300053077 Bacteria 1429
142 Ga0495595_0022892 3300053084 Bacteria 2747
143 Ga0495619_0175521 3300053085 Bacteria 1482
144 Ga0495619_0421607 3300053085 Bacteria 921
145 Ga0495619_0685753 3300053085 Unclassified 697
146 Ga0500616_0000644 3300053153 Bacteria 41857
147 Ga0501084_0000104 3300054114 Bacteria 62893
148 Ga0501084_0110120 3300054114 Bacteria 2314
149 Ga0495668_0496362
150 Ga0070683_100360799
151 Ga0068868_100111949
152 Ga0070689_100507574
153 Ga0070674_100837006
154 Ga0070674_101723861
155 Ga0070673_100711587
156 Ga0070713_100317055
157 Ga0070711_100508511
158 Ga0070711_100650136
159 Ga0070681_10837063
160 Ga0070679_101547811
161 Ga0070672_100992122
162 Ga0070693_100085561
163 Ga0070665_101301398
164 Ga0070704_100639447
165 Ga0068859_102000948
166 Ga0068866_10230359
167 Ga0068851_10420491
168 Ga0068860_100815083
169 Ga0081539_10009056
170 Ga0070717_10743929
171 Ga0075434_100293138
172 Ga0097620_102001153
173 Ga0105240_11692204
174 Ga0105245_10864418
175 Ga0105238_10570306
176 Ga0105246_10977190
177 Ga0105246_11083223
178 Ga0163162_12349404
179 Ga0157375_10176683
180 Ga0182008_10370837
181 Ga0213876_10069495
182 Ga0207663_10473168
183 Ga0207687_10492646
184 Ga0207670_10438711
185 Ga0207651_10167847
186 Ga0207677_10050624
187 Ga0207677_10329207
188 Ga0268266_10553191
189 Ga0265319_1044498
190 Ga0265334_10023375
191 Ga0265322_10043879
192 Ga0265338_10000822
193 Ga0265328_10131281
194 Ga0265325_10003138
195 Ga0265339_10003370
196 Ga0265331_10012139
197 Ga0265327_10012672
198 Ga0265327_10027310
199 Ga0265327_10097122
200 Ga0265313_10001815
201 Ga0265314_10215965
202 Ga0307407_10578096
203 Ga0307415_100559417
204 Ga0373926_0387982
205 Ga0373935_0508441
206 Ga0373933_0442192
207 Ga0373947_0117373
208 Ga0373925_0049674
209 Ga0436365_1756536
210 Ga0436362_0067808
211 Ga0495603_0837242
212 Ga0495629_0092192
213 Ga0495629_0379930
214 Ga0495629_0702674
215 Ga0495653_0108609
216 Ga0495662_0251220
217 Ga0495608_0268953
218 Ga0495630_0341025
219 Ga0495652_0711327
220 Ga0495586_0299484
221 Ga0495645_0472140
222 Ga0495604_0225268
223 Ga0495674_0696352
224 Ga0495672_0005231
225 Ga0495680_0317449
226 Ga0495680_0506463
227 Ga0495684_0410945
228 Ga0496100_0015540
229 Ga0496101_0019519
230 Ga0496102_0034009
231 Ga0496104_0047428
232 Ga0496104_0979818
233 Ga0496104_1580216
234 Ga0496105_0177991
235 Ga0496105_0281997
236 Ga0496105_0639606
237 Ga0496106_0060295
238 Ga0496107_0319350
239 Ga0496107_0426108
240 Ga0496108_0136771
241 Ga0496108_0155255
242 Ga0496108_1335594
243 Ga0496109_0069201
244 Ga0496109_0087839
245 Ga0496109_0111265
246 Ga0496109_0383649
247 Ga0496109_1141138
248 Ga0496110_0028603
249 Ga0496110_0257339
250 Ga0496110_0559803
251 Ga0496111_0238007
252 Ga0496111_1097495
253 Ga0496112_0007643
254 Ga0496112_0012238
255 Ga0496113_0377819
256 Ga0496113_1558205
257 Ga0496114_0743591
258 Ga0496114_1801504
259 Ga0496115_0993855
260 Ga0501031_0169438
261 Ga0501032_0041717
262 Ga0501033_0394320
263 Ga0501034_0007153
264 Ga0501034_0021704
265 Ga0501037_0006487
266 Ga0501037_0760437
267 Ga0501038_0015981
268 Ga0501043_0040791
269 Ga0501047_0022951
270 Ga0501047_0134161
271 Ga0501048_0228935
272 Ga0501068_0109437
273 Ga0501068_0239973
274 Ga0501070_0009375
275 Ga0501070_0015191
276 Ga0501072_0474390
277 Ga0501074_0032866
278 Ga0501079_0419329
279 Ga0501080_0022358
280 Ga0501080_0068193
281 Ga0501080_0668374
282 Ga0501083_0098547
283 Ga0501083_0331471
284 Ga0501035_0059754
285 Ga0501044_0001716
286 Ga0501044_0405142
287 nmdc:mga0n895_531487_c1
288 Ga0495601_0108500
289 Ga0495601_0169096
290 Ga0495595_0022892
291 Ga0495619_0175521
292 Ga0495619_0421607
293 Ga0495619_0685753
294 Ga0500616_0000644
295 Ga0501084_0000104
296 Ga0501084_0110120

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14588

YjgF_endoribonc

YjgF/chorismate_mutase-like, putative endoribonuclease

15

161

0.83

PF01042

Ribonuc_L-PSP

Endoribonuclease L-PSP

29

168

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
2otm-assembly1.cif.gz_C crystal structure of a putative endoribonuclease (so_1960) from shewanella oneidensis mr-1 at 1.85 a resolution 0.8984 1 142
2otm-assembly1.cif.gz_C crystal structure of a putative endoribonuclease (so_1960) from shewanella oneidensis mr-1 at 1.85 a resolution 0.8867 1 142
3d01-assembly4.cif.gz_B error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8475 3 143
3d01-assembly2.cif.gz_E error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8465 3 143
3d01-assembly3.cif.gz_C error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8454 3 143
ID Description Score Start End Superfamily
af_I6YGW9_1_150_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9102 1 142 3.30.1330.40
af_I6YGW9_1_150_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.898 1 142 3.30.1330.40
af_A4I058_2_156_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8978 3 143 3.30.1330.40
2otmC00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8841 1 142 3.30.1330.40
af_A4I058_2_156_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8799 3 143 3.30.1330.40
ID Description Score Start End GO Terms
AF-A0A382K155-F1-model_v4 Endoribonuclease L-PSP/chorismate mutase-like domain-containing protein 0.9452 49 143
AF-A0A528AS19-F1-model_v4 RidA family protein 0.9424 49 143
AF-A0A842NFE9-F1-model_v4 RidA family protein 0.9372 53 143
AF-A0A382K155-F1-model_v4 Endoribonuclease L-PSP/chorismate mutase-like domain-containing protein 0.9356 49 143
AF-A0A375D404-F1-model_v4 deleted 0.9312 53 143

Map