F197729

General Info

Members Datasets Scaffolds Average Seq Length
146 108 292 621

Family's Representative Sequence

Representative Sequence 3300025921|Ga0207652_10073666|Ga0207652_100736661
Length 678
Sequence LDRCGHHKRGCRSALSASITLVSALRSLVIKERPTSQRRLAPEPGMKPIIIGTAGHIDHGKTSLVKALTGIDADRLEEEKRRGITIDLGFAHLELVVPSGEKLRLGFIDVPGHERFVRNMLAGVGGIDMVLLVIAADESIKPQTREHFEICRLLSIPRGITVITKADLVDEDTLSVVKLEVDDFVRGSFLDTARSPIVSVSAISGAGLDELKHEIVRLAADVPARDTDAILRLPVDRAFVMKGFGTVVTGTLIAGKIKKEEEVEIFPEKKRARVRGLQVHGAATDQAVAGQRTAVNLSGVQLEELGRGMTLASPDTLGTTQRLDVQISLLKDAKPLKNRARVHLHAFTSETIAEVSLHEGSELKPGSMGLAQLRTDHPVLVLPGDRAILRQFSPVVTVGGALVLDAFPLARQKKEARLKFLHTVAGGSREDAVLARITRCGKDGLSMVFAVQETGLKPSALKPILTALTQQGRIVQSGDLYLAAEAFKNAREATLAALDAFHKANPLVGGISKEELRSKIGLHQAVMEGILTQLARDKKAEVAGEQVRLAGRGVELKDDEAKAKEQIEKAFATAGLKVPLMKEVLASVPVDKARAQKLVTLLLRDRVLVKLADELVFHHSALEQLRQLMTAQKAKSPKIDVGAFKDLTGVSRKYAIPLLEYLDRERVTRRVGDERVIV

Samples

Sample ID Description Type Environment
1 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
48 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
66 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
67 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
68 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
69 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
70 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
71 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
72 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
80 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
81 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
82 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
83 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
84 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
85 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
88 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
89 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
90 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
91 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
92 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
93 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
94 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
95 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
96 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
101 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
102 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
105 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
106 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
107 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
108 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.16
Rhizosphere 92.47
Stem 0
Stem Tuber 0
Unclassified 2.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207652_10073666 3300025921 Bacteria 2972
2 Ga0070683_100019293 3300005329 Bacteria 6056
3 Ga0070683_100125509 3300005329 Bacteria 2426
4 Ga0070690_100055514 3300005330 Bacteria 2537
5 Ga0070690_100067523 3300005330 Bacteria 2317
6 Ga0070680_100053000 3300005336 Bacteria 3311
7 Ga0070709_10010966 3300005434 Bacteria 5034
8 Ga0070714_100002146 3300005435 Bacteria 14500
9 Ga0070714_100016793 3300005435 Bacteria 5919
10 Ga0070713_100042040 3300005436 Bacteria 3727
11 Ga0070694_100017534 3300005444 Bacteria 4526
12 Ga0070678_100128700 3300005456 Bacteria 2008
13 Ga0070698_100005307 3300005471 Bacteria 14101
14 Ga0070698_100012225 3300005471 Bacteria 9096
15 Ga0070699_100007389 3300005518 Bacteria 9567
16 Ga0070679_100023748 3300005530 Bacteria 6007
17 Ga0070697_100002788 3300005536 Bacteria 13454
18 Ga0070697_100022303 3300005536 Bacteria 5025
19 Ga0068853_100089052 3300005539 Bacteria 2710
20 Ga0070693_100007605 3300005547 Bacteria 5305
21 Ga0070665_100000553 3300005548 Bacteria 52206
22 Ga0068855_100001423 3300005563 Bacteria 29740
23 Ga0068855_100025060 3300005563 Bacteria 7140
24 Ga0068854_100019314 3300005578 Bacteria 4591
25 Ga0068856_100000346 3300005614 Bacteria 50548
26 Ga0068852_100052371 3300005616 Bacteria 3508
27 Ga0068859_100003335 3300005617 Bacteria 16328
28 Ga0068859_100025068 3300005617 Bacteria 5986
29 Ga0068864_100018570 3300005618 Bacteria 5812
30 Ga0068863_100002316 3300005841 Bacteria 18943
31 Ga0068858_100025682 3300005842 Bacteria 5480
32 Ga0068858_100053439 3300005842 Bacteria 3737
33 Ga0068860_100022888 3300005843 Bacteria 6042
34 Ga0070717_10103195 3300006028 Bacteria 2424
35 Ga0070716_100003424 3300006173 Bacteria 7459
36 Ga0097621_100000329 3300006237 Bacteria 32168
37 Ga0097621_100027060 3300006237 Bacteria 4506
38 Ga0068871_100000280 3300006358 Bacteria 35380
39 Ga0068871_100029274 3300006358 Bacteria 4323
40 Ga0075428_100168807 3300006844 Bacteria 2373
41 Ga0075431_100031336 3300006847 Bacteria 5477
42 Ga0075431_100093558 3300006847 Bacteria 3102
43 Ga0075433_10019410 3300006852 Bacteria 5664
44 Ga0075434_100005451 3300006871 Bacteria 11591
45 Ga0075434_100026180 3300006871 Bacteria 5713
46 Ga0068865_100020382 3300006881 Bacteria 4298
47 Ga0075436_100003125 3300006914 Bacteria 11350
48 Ga0075436_100014904 3300006914 Bacteria 5326
49 Ga0097620_100003335 3300006931 Bacteria 16328
50 Ga0097620_100025068 3300006931 Bacteria 5986
51 Ga0075435_100004203 3300007076 Bacteria 9879
52 Ga0105240_10020727 3300009093 Bacteria 8759
53 Ga0105240_10069572 3300009093 Bacteria 4356
54 Ga0105245_10004154 3300009098 Bacteria 12863
55 Ga0105238_10053289 3300009551 Bacteria 4065
56 Ga0157369_10015635 3300013105 Bacteria 8552
57 Ga0157369_10156335 3300013105 Bacteria 2408
58 Ga0157374_10000294 3300013296 Bacteria 46093
59 Ga0157378_10000250 3300013297 Bacteria 52510
60 Ga0157372_10001326 3300013307 Bacteria 26787
61 Ga0157379_10010019 3300014968 Bacteria 8258
62 Ga0157376_10000026 3300014969 Bacteria 204319
63 Ga0157376_10030254 3300014969 Bacteria 4322
64 Ga0213875_10023808 3300021388 Bacteria 2922
65 Ga0207699_10012134 3300025906 Bacteria 4375
66 Ga0207693_10028505 3300025915 Bacteria 4411
67 Ga0207660_10006260 3300025917 Bacteria 7726
68 Ga0207652_10035113 3300025921 Bacteria 4230
69 Ga0207646_10040020 3300025922 Bacteria 4217
70 Ga0207646_10114828 3300025922 Bacteria 2418
71 Ga0207700_10042890 3300025928 Bacteria 3320
72 Ga0207667_10004974 3300025949 Bacteria 16235
73 Ga0207667_10019068 3300025949 Bacteria 7668
74 Ga0207703_10016142 3300026035 Bacteria 5821
75 Ga0207639_10009102 3300026041 Bacteria 6842
76 Ga0207708_10036053 3300026075 Bacteria 3764
77 Ga0207702_10004159 3300026078 Bacteria 12964
78 Ga0207702_10021166 3300026078 Bacteria 5382
79 Ga0207641_10000521 3300026088 Bacteria 43168
80 Ga0207641_10026074 3300026088 Bacteria 4822
81 Ga0207676_10049283 3300026095 Bacteria 3275
82 Ga0207675_100086957 3300026118 Bacteria 2935
83 Ga0207698_10054237 3300026142 Bacteria 3083
84 Ga0268266_10000140 3300028379 Bacteria 140387
85 Ga0265316_10002054 3300031344 Bacteria 21202
86 Ga0265314_10000348 3300031711 Bacteria 64175
87 Ga0316577_10003495 3300031733 Bacteria 7943
88 Ga0373926_0001130 3300035083 Bacteria 7927
89 Ga0373943_0008654 3300035170 Bacteria 4562
90 Ga0373943_0022610 3300035170 Bacteria 2916
91 Ga0373924_0000095 3300035410 Bacteria 24483
92 Ga0373927_0010508 3300035695 Bacteria 6170
93 Ga0373927_0025719 3300035695 Bacteria 3848
94 Ga0373947_0008846 3300035725 Bacteria 5792
95 Ga0316584_0004903 3300036712 Bacteria 8904
96 Ga0373925_0025521 3300037068 Bacteria 4318
97 Ga0373925_0057279 3300037068 Bacteria 2920
98 Ga0395898_0048736 3300037466 Bacteria 4153
99 Ga0436363_0250603 3300039450 Bacteria 2504
100 Ga0466963_0020932 3300044694 Bacteria 4121
101 Ga0451576_0038931 3300045051 Bacteria 5032
102 Ga0466958_0038430 3300045836 Bacteria 2872
103 Ga0466967_0001377 3300045976 Bacteria 14010
104 Ga0466967_0003139 3300045976 Bacteria 10639
105 Ga0495603_0010316 3300046455 Bacteria 5654
106 Ga0495629_0000696 3300046459 Bacteria 27231
107 Ga0495580_0015103 3300046472 Bacteria 5843
108 Ga0495580_0040529 3300046472 Bacteria 3326
109 Ga0495582_0013780 3300046473 Bacteria 4450
110 Ga0495582_0063897 3300046473 Bacteria 2032
111 Ga0495662_0016563 3300046476 Unclassified 3571
112 Ga0495665_0004267 3300046531 Bacteria 7725
113 Ga0495623_0022367 3300046679 Bacteria 4085
114 Ga0495658_0000316 3300046683 Bacteria 27468
115 Ga0495581_0001088 3300047315 Bacteria 14790
116 Ga0495604_0085789 3300047317 Bacteria 2349
117 Ga0495674_0026359 3300047319 Bacteria 5318
118 Ga0495672_0014985 3300047320 Bacteria 5282
119 Ga0495676_0028675 3300047321 Bacteria 4750
120 Ga0495680_0014878 3300047322 Bacteria 6726
121 Ga0495684_0080442 3300047471 Unclassified 2474
122 Ga0496105_0055223 3300048908 Bacteria 3279
123 Ga0496112_0012333 3300048915 Bacteria 7851
124 Ga0496112_0014212 3300048915 Bacteria 7377
125 Ga0496112_0028016 3300048915 Bacteria 5435
126 Ga0496112_0106326 3300048915 Bacteria 2776
127 Ga0496112_0150559 3300048915 Bacteria 2294
128 Ga0496113_0024793 3300048916 Bacteria 4268
129 Ga0496114_0004560 3300048917 Bacteria 10759
130 Ga0496115_0002637 3300048918 Bacteria 12882
131 Ga0501041_0025151 3300049577 Bacteria 3579
132 Ga0501198_000328 3300049649 Bacteria 6017
133 Ga0501225_0001993 3300049705 Bacteria 6379
134 Ga0501081_0047293 3300049743 Bacteria 2960
135 nmdc:mga06r32_105539_c1 3300050510 Bacteria 2768
136 nmdc:mga06r32_2193_c1 3300050510 Bacteria 17492
137 nmdc:mga06r32_31517_c1 3300050510 Bacteria 4980
138 nmdc:mga0n895_163067_c1 3300050512 Bacteria 2260
139 nmdc:mga0n895_207034_c1 3300050512 Unclassified 1992
140 nmdc:mga0n895_57421_c1 3300050512 Bacteria 3836
141 nmdc:mga0n895_7084_c1 3300050512 Bacteria 9583
142 nmdc:mga0rr50_15507_c1 3300050513 Bacteria 5032
143 nmdc:mga08x19_41077_c1 3300050514 Bacteria 2946
144 nmdc:mga08x19_6784_c1 3300050514 Bacteria 6799
145 nmdc:mga0a205_42555_c1 3300050515 Bacteria 4377
146 Ga0495619_0002541 3300053085 Bacteria 11945
147 Ga0207652_10073666
148 Ga0070683_100019293
149 Ga0070683_100125509
150 Ga0070690_100055514
151 Ga0070690_100067523
152 Ga0070680_100053000
153 Ga0070709_10010966
154 Ga0070714_100002146
155 Ga0070714_100016793
156 Ga0070713_100042040
157 Ga0070694_100017534
158 Ga0070678_100128700
159 Ga0070698_100005307
160 Ga0070698_100012225
161 Ga0070699_100007389
162 Ga0070679_100023748
163 Ga0070697_100002788
164 Ga0070697_100022303
165 Ga0068853_100089052
166 Ga0070693_100007605
167 Ga0070665_100000553
168 Ga0068855_100001423
169 Ga0068855_100025060
170 Ga0068854_100019314
171 Ga0068856_100000346
172 Ga0068852_100052371
173 Ga0068859_100003335
174 Ga0068859_100025068
175 Ga0068864_100018570
176 Ga0068863_100002316
177 Ga0068858_100025682
178 Ga0068858_100053439
179 Ga0068860_100022888
180 Ga0070717_10103195
181 Ga0070716_100003424
182 Ga0097621_100000329
183 Ga0097621_100027060
184 Ga0068871_100000280
185 Ga0068871_100029274
186 Ga0075428_100168807
187 Ga0075431_100031336
188 Ga0075431_100093558
189 Ga0075433_10019410
190 Ga0075434_100005451
191 Ga0075434_100026180
192 Ga0068865_100020382
193 Ga0075436_100003125
194 Ga0075436_100014904
195 Ga0097620_100003335
196 Ga0097620_100025068
197 Ga0075435_100004203
198 Ga0105240_10020727
199 Ga0105240_10069572
200 Ga0105245_10004154
201 Ga0105238_10053289
202 Ga0157369_10015635
203 Ga0157369_10156335
204 Ga0157374_10000294
205 Ga0157378_10000250
206 Ga0157372_10001326
207 Ga0157379_10010019
208 Ga0157376_10000026
209 Ga0157376_10030254
210 Ga0213875_10023808
211 Ga0207699_10012134
212 Ga0207693_10028505
213 Ga0207660_10006260
214 Ga0207652_10035113
215 Ga0207646_10040020
216 Ga0207646_10114828
217 Ga0207700_10042890
218 Ga0207667_10004974
219 Ga0207667_10019068
220 Ga0207703_10016142
221 Ga0207639_10009102
222 Ga0207708_10036053
223 Ga0207702_10004159
224 Ga0207702_10021166
225 Ga0207641_10000521
226 Ga0207641_10026074
227 Ga0207676_10049283
228 Ga0207675_100086957
229 Ga0207698_10054237
230 Ga0268266_10000140
231 Ga0265316_10002054
232 Ga0265314_10000348
233 Ga0316577_10003495
234 Ga0373926_0001130
235 Ga0373943_0008654
236 Ga0373943_0022610
237 Ga0373924_0000095
238 Ga0373927_0010508
239 Ga0373927_0025719
240 Ga0373947_0008846
241 Ga0316584_0004903
242 Ga0373925_0025521
243 Ga0373925_0057279
244 Ga0395898_0048736
245 Ga0436363_0250603
246 Ga0466963_0020932
247 Ga0451576_0038931
248 Ga0466958_0038430
249 Ga0466967_0001377
250 Ga0466967_0003139
251 Ga0495603_0010316
252 Ga0495629_0000696
253 Ga0495580_0015103
254 Ga0495580_0040529
255 Ga0495582_0013780
256 Ga0495582_0063897
257 Ga0495662_0016563
258 Ga0495665_0004267
259 Ga0495623_0022367
260 Ga0495658_0000316
261 Ga0495581_0001088
262 Ga0495604_0085789
263 Ga0495674_0026359
264 Ga0495672_0014985
265 Ga0495676_0028675
266 Ga0495680_0014878
267 Ga0495684_0080442
268 Ga0496105_0055223
269 Ga0496112_0012333
270 Ga0496112_0014212
271 Ga0496112_0028016
272 Ga0496112_0106326
273 Ga0496112_0150559
274 Ga0496113_0024793
275 Ga0496114_0004560
276 Ga0496115_0002637
277 Ga0501041_0025151
278 Ga0501198_000328
279 Ga0501225_0001993
280 Ga0501081_0047293
281 nmdc:mga06r32_105539_c1
282 nmdc:mga06r32_2193_c1
283 nmdc:mga06r32_31517_c1
284 nmdc:mga0n895_163067_c1
285 nmdc:mga0n895_207034_c1
286 nmdc:mga0n895_57421_c1
287 nmdc:mga0n895_7084_c1
288 nmdc:mga0rr50_15507_c1
289 nmdc:mga08x19_41077_c1
290 nmdc:mga08x19_6784_c1
291 nmdc:mga0a205_42555_c1
292 Ga0495619_0002541

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03144

GTP_EFTU_D2

Elongation factor Tu domain 2

245

312

0.97

PF09106

SelB-wing_2

Elongation factor SelB, winged helix

495

549

0.97

PF00009

GTP_EFTU

Elongation factor Tu GTP binding domain

46

221

0.93

PF09107

SelB-wing_3

Elongation factor SelB, winged helix

631

677

0.93

PF01926

MMR_HSR1

50S ribosome-binding GTPase

50

165

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
5i4q-assembly1.cif.gz_C-2 contact-dependent inhibition system from escherichia coli nc101 - ternary cdia/cdii/ef-tu complex (domains 2 and 3) 0.9129 185 363
2lnb-assembly1.cif.gz_A solution nmr structure of n-terminal domain (6-74) of human zbp1 protein, northeast structural genomics consortium target hr8174a. 0.9104 441 506
5i4q-assembly1.cif.gz_C-2 contact-dependent inhibition system from escherichia coli nc101 - ternary cdia/cdii/ef-tu complex (domains 2 and 3) 0.8759 185 363
1wsu-assembly1.cif.gz_D c-terminal domain of elongation factor selb complexed with secis rna 0.8707 512 633
7a5g-assembly1.cif.gz_Z structure of the elongating human mitoribosome bound to mtef-tu.gmppcp and a/t mt-trna 0.8679 2 358
ID Description Score Start End Superfamily
af_Q57771_140_225_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9806 185 267 2.40.30.10
af_Q8IYD1_426_514_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9796 182 269 2.40.30.10
1skqB02 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9783 182 267 2.40.30.10
af_Q4CXN9_586_676_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9764 185 269 2.40.30.10
af_Q4E0N9_470_555_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9743 185 268 2.40.30.10
ID Description Score Start End GO Terms
AF-A0A353NQR7-F1-model_v4 Selenocysteine-specific translation factor 0.9783 75 265 GO:0003746
GO:0003924
GO:0005525
GO:0005829
AF-Q8MUX6-F1-model_v4 Elongation factor 1-alpha 0.9618 179 268 GO:0003746
GO:0005525
AF-A0A2U8URT8-F1-model_v4 Elongation factor 1 alpha (EC 1.9.3.1) 0.9618 178 268 GO:0003746
GO:0005525
GO:0016491
AF-A0A485PIJ6-F1-model_v4 Translation elongation factor EFTu-like domain-containing protein 0.9584 178 264 GO:0005525
AF-A0A353NQR7-F1-model_v4 Selenocysteine-specific translation factor 0.9583 75 265 GO:0003746
GO:0003924
GO:0005525
GO:0005829

Map