F194739

General Info

Members Datasets Scaffolds Average Seq Length
145 96 132 389

Family's Representative Sequence

Representative Sequence 3300014969|Ga0157376_10060259|Ga0157376_100602593
Length 416
Sequence MKFQEFDFLTSCSSAESSKLAACQVLNMVKILFFFSLFIVFYSYVGYGIVIYLLVTLKHLLSHRKEIHEPVPFEPEITLIVAAYNEAGLIENKIVNSLNLKYPSGKLHWIFVTDGSTDETPEIVSRFSQIRLLHQTERKGKAGALNRAMKFVETPFVIFSDSNTQLNPEAVQEIVKHYTDARVGGVAGEKMIVKKSAENAAASGEGFYWRYESQLKKLDSAFYSVVGAAGELFSLRTSLYHEAAEDTIIEDFVLSLQICMAGFVIRYEPKAYALESASISMQEEQKRKVRIAAGAFQAMQILKGLFNVFRFPILAFQFVSHRILRWTICPLCLIICFFTNAVLVYDHTGRFYTVVFLCQTVFYAMAFYGWVFANMHQRMKLLFVPYYFLFMNLSVFLGFYRFLRNKQSSVWEKAKR

Samples

Sample ID Description Type Environment
1 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
2 2738543023 Pedobacter sp. OK628 Isolate Unclassified
3 2739367656 Pedobacter sp. CF523 Isolate Unclassified
4 2818991437 Pedobacter terrae 518 Isolate Unclassified
5 2818991444 Filimonas endophytica 3197 Isolate Unclassified
6 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
7 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
8 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
9 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
10 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
11 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
12 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
13 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
14 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
15 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
16 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
17 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
18 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
19 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
22 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
23 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
24 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
25 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
49 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
52 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
53 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
70 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
71 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
72 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
75 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
76 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
77 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
78 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
79 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
80 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
81 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
82 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
83 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
86 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
87 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
88 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
90 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
91 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
92 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
93 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
94 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
95 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
96 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.03
Metatranscriptomes 0
Isolates 8.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.72
Nodule 0
Rhizoplane 0.69
Rhizosphere 77.93
Stem 0
Stem Tuber 0
Unclassified 9.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10001118 3300001990 Bacteria 9430
2 JGI24735J21928_10000001 3300002067 Bacteria 650042
3 JGI25162J39368_1000024 3300002737 Bacteria 229507
4 JGI25165J46597_1000707 3300003214 Bacteria 26376
5 rootH1_10092333 3300003316 Bacteria 17240
6 rootL2_10115140 3300003322 Bacteria 12853
7 rootH1_10004639 3300003323 Bacteria 4908
8 rootH1_10026170 3300003323 Bacteria 21760
9 Ga0065165_1000145 3300005262 Bacteria 123255
10 Ga0065714_10002419 3300005288 Bacteria 25376
11 Ga0065714_10064439 3300005288 Bacteria 112310
12 Ga0065714_10094571 3300005288 Bacteria 1797
13 Ga0070683_100000491 3300005329 Bacteria 27869
14 Ga0070682_100122171 3300005337 Bacteria 1750
15 Ga0070660_100032406 3300005339 Bacteria 3932
16 Ga0070659_100000486 3300005366 Bacteria 29153
17 Ga0070684_100013264 3300005535 Bacteria 6640
18 Ga0070684_100054680 3300005535 Bacteria 3478
19 Ga0068855_100000090 3300005563 Bacteria 110528
20 Ga0068855_100000577 3300005563 Bacteria 44984
21 Ga0068855_100001018 3300005563 Bacteria 34919
22 Ga0068855_100082021 3300005563 Bacteria 3738
23 Ga0068854_100269704 3300005578 Bacteria 1366
24 Ga0068856_100000078 3300005614 Bacteria 93041
25 Ga0068856_100012361 3300005614 Bacteria 8268
26 Ga0068856_100250749 3300005614 Bacteria 1785
27 Ga0068860_100000431 3300005843 Bacteria 53318
28 Ga0075366_10001640 3300006195 Bacteria 11231
29 Ga0097621_100019692 3300006237 Bacteria 5186
30 Ga0068871_100000679 3300006358 Bacteria 23198
31 Ga0105244_10034637 3300009036 Bacteria 2657
32 Ga0105240_10014703 3300009093 Bacteria 10676
33 Ga0105240_10029038 3300009093 Bacteria 7213
34 Ga0105240_10123896 3300009093 Bacteria 3109
35 Ga0105240_10160886 3300009093 Bacteria 2666
36 Ga0105240_10527604 3300009093 Bacteria 1309
37 Ga0111539_10202136 3300009094 Bacteria 2317
38 Ga0105239_10000042 3300010375 Bacteria 199662
39 Ga0105239_10000062 3300010375 Bacteria 153782
40 Ga0105239_10014518 3300010375 Bacteria 8739
41 Ga0105239_10019902 3300010375 Bacteria 7408
42 Ga0105239_10332778 3300010375 Unclassified 1713
43 Ga0157373_10000807 3300013100 Bacteria 24232
44 Ga0157371_10000137 3300013102 Bacteria 107248
45 Ga0157369_10081481 3300013105 Bacteria 3463
46 Ga0163162_10000170 3300013306 Bacteria 60233
47 Ga0163162_10000337 3300013306 Bacteria 42559
48 Ga0163162_10003837 3300013306 Bacteria 14412
49 Ga0163162_10004601 3300013306 Bacteria 13293
50 Ga0163162_10006143 3300013306 Bacteria 11624
51 Ga0163162_10019347 3300013306 Bacteria 6678
52 Ga0163162_10247067 3300013306 Unclassified 1916
53 Ga0157372_10000926 3300013307 Bacteria 31972
54 Ga0157372_10002051 3300013307 Bacteria 21906
55 Ga0157372_10002131 3300013307 Bacteria 21503
56 Ga0157372_10017228 3300013307 Bacteria 7755
57 Ga0157372_10334079 3300013307 Unclassified 1765
58 Ga0157375_10235756 3300013308 Bacteria 1989
59 Ga0163163_10121298 3300014325 Bacteria 2648
60 Ga0157379_10079798 3300014968 Bacteria 2931
61 Ga0157376_10011928 3300014969 Bacteria 6428
62 Ga0157376_10060259 3300014969 Bacteria 3186
63 Ga0157376_10060301 3300014969 Bacteria 3185
64 Ga0182006_1000108 3300015261 Bacteria 89633
65 Ga0182006_1033606 3300015261 Unclassified 2055
66 Ga0207427_100043 3300025231 Bacteria 249595
67 Ga0209437_100008 3300025233 Bacteria 921142
68 Ga0209437_100017 3300025233 Bacteria 694471
69 Ga0209026_1003112 3300025250 Bacteria 5653
70 Ga0209129_1009654 3300025258 Bacteria 2508
71 Ga0209233_1000158 3300025261 Bacteria 162281
72 Ga0209455_1003601 3300025272 Bacteria 5394
73 Ga0207695_10000089 3300025913 Bacteria 273463
74 Ga0207695_10018518 3300025913 Bacteria 8049
75 Ga0207695_10167964 3300025913 Bacteria 2121
76 Ga0207695_10389702 3300025913 Bacteria 1278
77 Ga0207671_10008264 3300025914 Bacteria 8854
78 Ga0207671_10124417 3300025914 Bacteria 1973
79 Ga0207657_10019879 3300025919 Bacteria 6363
80 Ga0207659_10003467 3300025926 Bacteria 9457
81 Ga0207690_10000361 3300025932 Bacteria 30094
82 Ga0207669_10004411 3300025937 Bacteria 6192
83 Ga0207667_10000009 3300025949 Bacteria 603135
84 Ga0207667_10004512 3300025949 Bacteria 17060
85 Ga0207667_10013469 3300025949 Bacteria 9358
86 Ga0207667_10149891 3300025949 Bacteria 2401
87 Ga0207702_10000418 3300026078 Bacteria 48592
88 Ga0207702_10156944 3300026078 Bacteria 2075
89 Ga0207683_10024029 3300026121 Bacteria 5245
90 Ga0268264_10004116 3300028381 Bacteria 12440
91 Ga0307408_100001539 3300031548 Bacteria 17123
92 Ga0307408_100001838 3300031548 Bacteria 15469
93 Ga0307408_100006076 3300031548 Bacteria 8033
94 Ga0265314_10116161 3300031711 Bacteria 1692
95 Ga0307516_10005841 3300031730 Bacteria 14581
96 Ga0307412_10001805 3300031911 Bacteria 11838
97 Ga0495650_0000138 3300046471 Bacteria 171220
98 Ga0495585_0000128 3300046492 Bacteria 82002
99 Ga0495606_0000002 3300046507 Bacteria 554637
100 Ga0495606_0028205 3300046507 Bacteria 3964
101 Ga0495606_0047513 3300046507 Bacteria 2828
102 Ga0495610_0000307 3300046512 Bacteria 51754
103 Ga0495630_0164959 3300046517 Bacteria 1687
104 Ga0495652_0213696 3300046529 Bacteria 1454
105 Ga0495625_0000005 3300046660 Bacteria 596135
106 Ga0495625_0010396 3300046660 Bacteria 7706
107 Ga0495625_0083688 3300046660 Bacteria 2217
108 Ga0495661_0005682 3300046665 Bacteria 8830
109 Ga0495661_0039249 3300046665 Bacteria 2943
110 Ga0495670_0052277 3300046691 Bacteria 2045
111 Ga0495649_0000003 3300046694 Bacteria 880817
112 Ga0495660_0008644 3300046810 Bacteria 5957
113 Ga0495636_0000695 3300047318 Bacteria 12321
114 Ga0495686_0062093 3300047472 Bacteria 2318
115 Ga0496124_0023993 3300048927 Bacteria 5553
116 Ga0501033_0044914 3300049570 Bacteria 3289
117 Ga0501034_0026788 3300049571 Bacteria 5865
118 Ga0501034_0036241 3300049571 Unclassified 4997
119 Ga0501034_0131945 3300049571 Bacteria 2481
120 Ga0501067_0071126 3300049583 Bacteria 1926
121 Ga0501079_0059742 3300049741 Bacteria 2941
122 Ga0501241_000447 3300049758 Bacteria 8991
123 Ga0501035_0105911 3300049822 Bacteria 2466
124 Ga0501044_0056205 3300049823 Unclassified 4040
125 nmdc:mga0k408_16_c2 3300050493 Bacteria 101089
126 nmdc:mga0k408_61_c1 3300050493 Bacteria 53671
127 Ga0500562_000005 3300053108 Bacteria 266746
128 Ga0500618_000003 3300053125 Bacteria 338706
129 Ga0500573_0169465 3300053140 Bacteria 1182
130 Ga0500622_0000143 3300053156 Bacteria 76095
131 Ga0500645_017705 3300053730 Bacteria 2230
132 Ga0501082_0017424 3300060353 Bacteria 6188

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046529 Ga0495652_0213696 Ga0495652_0213696_54_1064 336
2 3300053140 Ga0500573_0169465 Ga0500573_0169465_67_1083 338
3 3300005337 Ga0070682_100122171 Ga0070682_1001221712 358
4 3300053156 Ga0500622_0000143 Ga0500622_0000143_63108_64283 370
5 3300013306 Ga0163162_10247067 Ga0163162_102470671 372
6 3300053108 Ga0500562_000005 Ga0500562_000005_158747_159922 373
7 3300053730 Ga0500645_017705 Ga0500645_017705_463_1638 373
8 3300005288 Ga0065714_10094571 Ga0065714_100945712 374
9 3300013102 Ga0157371_10000137 Ga0157371_1000013761 374
10 3300005563 Ga0068855_100001018 Ga0068855_10000101812 376
11 3300015261 Ga0182006_1000108 Ga0182006_100010841 376
12 3300025949 Ga0207667_10004512 Ga0207667_100045125 376
13 3300005329 Ga0070683_100000491 Ga0070683_1000004918 378
14 3300005535 Ga0070684_100013264 Ga0070684_1000132642 378
15 3300009093 Ga0105240_10014703 Ga0105240_100147032 378
16 3300025913 Ga0207695_10000089 Ga0207695_100000898 378
17 3300025949 Ga0207667_10013469 Ga0207667_100134693 378
18 3300013307 Ga0157372_10017228 Ga0157372_100172287 379
19 iso_pu_bacteria 2818991444 2819589791 380
20 3300005563 Ga0068855_100000577 Ga0068855_1000005778 381
21 3300046517 Ga0495630_0164959 Ga0495630_0164959_513_1664 381
22 3300009093 Ga0105240_10123896 Ga0105240_101238963 383
23 3300010375 Ga0105239_10014518 Ga0105239_100145183 383
24 3300025272 Ga0209455_1003601 Ga0209455_10036014 383
25 3300025913 Ga0207695_10018518 Ga0207695_100185182 383
26 iso_pu_bacteria 2738543023 2739301053 384
27 iso_pu_bacteria 2818991437 2819549522 384
28 3300003214 JGI25165J46597_1000707 JGI25165J46597_100070714 385
29 3300003323 rootH1_10026170 rootH1_100261704 385
30 3300025231 Ga0207427_100043 Ga0207427_100043203 385
31 3300025233 Ga0209437_100008 Ga0209437_100008735 385
32 3300025261 Ga0209233_1000158 Ga0209233_100015843 385
33 3300049570 Ga0501033_0044914 Ga0501033_0044914_52_1212 385
34 3300049571 Ga0501034_0026788 Ga0501034_0026788_661_1821 385
35 3300049571 Ga0501034_0036241 Ga0501034_0036241_92_1252 385
36 3300049822 Ga0501035_0105911 Ga0501035_0105911_377_1537 385
37 3300049823 Ga0501044_0056205 Ga0501044_0056205_2772_3932 385
38 iso_pu_bacteria 2739367656 2739617272 385
39 iso_pu_bacteria 2852627209 2852631286 385
40 3300013307 Ga0157372_10334079 Ga0157372_103340791 386
41 iso_pu_bacteria 2929154850 2929159974 386
42 3300025926 Ga0207659_10003467 Ga0207659_100034672 387
43 3300026121 Ga0207683_10024029 Ga0207683_100240293 387
44 iso_pu_bacteria 2599185184 2599477379 387
45 iso_pu_bacteria 2852623160 2852623918 387
46 iso_pu_bacteria 2884933994 2884937179 387
47 iso_pu_bacteria 2919437846 2919441288 387
48 iso_pu_bacteria 2928078545 2928079295 387
49 iso_pu_bacteria 2928147474 2928148334 387
50 iso_pu_bacteria 2932082852 2932084123 387
51 3300005288 Ga0065714_10002419 Ga0065714_1000241914 388
52 3300005288 Ga0065714_10064439 Ga0065714_1006443935 388
53 3300006237 Ga0097621_100019692 Ga0097621_1000196926 388
54 3300006358 Ga0068871_100000679 Ga0068871_1000006799 388
55 3300009036 Ga0105244_10034637 Ga0105244_100346373 388
56 3300009093 Ga0105240_10029038 Ga0105240_100290384 388
57 3300010375 Ga0105239_10000042 Ga0105239_1000004222 388
58 3300013306 Ga0163162_10000337 Ga0163162_1000033721 388
59 3300014969 Ga0157376_10060259 Ga0157376_100602593 388
60 3300014969 Ga0157376_10060301 Ga0157376_100603013 388
61 3300025914 Ga0207671_10124417 Ga0207671_101244172 388
62 3300031711 Ga0265314_10116161 Ga0265314_101161612 388
63 3300049758 Ga0501241_000447 Ga0501241_000447_5378_6544 388
64 3300005262 Ga0065165_1000145 Ga0065165_100014525 389
65 3300009094 Ga0111539_10202136 Ga0111539_102021362 389
66 3300013306 Ga0163162_10003837 Ga0163162_100038376 389
67 3300013308 Ga0157375_10235756 Ga0157375_102357561 389
68 3300015261 Ga0182006_1033606 Ga0182006_10336062 389
69 3300025937 Ga0207669_10004411 Ga0207669_100044116 389
70 3300046691 Ga0495670_0052277 Ga0495670_0052277_81_1310 389
71 3300047318 Ga0495636_0000695 Ga0495636_0000695_8847_10016 389
72 3300002737 JGI25162J39368_1000024 JGI25162J39368_1000024111 390
73 3300005339 Ga0070660_100032406 Ga0070660_1000324062 390
74 3300005366 Ga0070659_100000486 Ga0070659_10000048620 390
75 3300005563 Ga0068855_100082021 Ga0068855_1000820212 390
76 3300005578 Ga0068854_100269704 Ga0068854_1002697041 390
77 3300005843 Ga0068860_100000431 Ga0068860_10000043121 390
78 3300009093 Ga0105240_10160886 Ga0105240_101608862 390
79 3300010375 Ga0105239_10000062 Ga0105239_1000006213 390
80 3300010375 Ga0105239_10019902 Ga0105239_100199022 390
81 3300013306 Ga0163162_10000170 Ga0163162_1000017021 390
82 3300013306 Ga0163162_10019347 Ga0163162_100193475 390
83 3300013307 Ga0157372_10002131 Ga0157372_1000213113 390
84 3300014325 Ga0163163_10121298 Ga0163163_101212982 390
85 3300014968 Ga0157379_10079798 Ga0157379_100797983 390
86 3300014969 Ga0157376_10011928 Ga0157376_100119287 390
87 3300025233 Ga0209437_100017 Ga0209437_100017110 390
88 3300025258 Ga0209129_1009654 Ga0209129_10096542 390
89 3300025913 Ga0207695_10167964 Ga0207695_101679642 390
90 3300025914 Ga0207671_10008264 Ga0207671_100082642 390
91 3300025919 Ga0207657_10019879 Ga0207657_100198794 390
92 3300025932 Ga0207690_10000361 Ga0207690_1000036122 390
93 3300025949 Ga0207667_10149891 Ga0207667_101498911 390
94 3300028381 Ga0268264_10004116 Ga0268264_100041163 390
95 3300031548 Ga0307408_100001539 Ga0307408_1000015394 390
96 3300031548 Ga0307408_100006076 Ga0307408_1000060769 390
97 3300031730 Ga0307516_10005841 Ga0307516_100058417 390
98 3300031911 Ga0307412_10001805 Ga0307412_100018055 390
99 3300048927 Ga0496124_0023993 Ga0496124_0023993_2867_4042 390
100 3300049571 Ga0501034_0131945 Ga0501034_0131945_631_1818 390
101 3300049583 Ga0501067_0071126 Ga0501067_0071126_659_1846 390
102 3300049741 Ga0501079_0059742 Ga0501079_0059742_725_1912 390
103 3300060353 Ga0501082_0017424 Ga0501082_0017424_1933_3120 390
104 3300001990 JGI24737J22298_10001118 JGI24737J22298_100011185 391
105 3300002067 JGI24735J21928_10000001 JGI24735J21928_10000001238 391
106 3300003316 rootH1_10092333 rootH1_100923332 391
107 3300003322 rootL2_10115140 rootL2_101151405 391
108 3300003323 rootH1_10004639 rootH1_100046391 391
109 3300005535 Ga0070684_100054680 Ga0070684_1000546801 391
110 3300005563 Ga0068855_100000090 Ga0068855_10000009028 391
111 3300005614 Ga0068856_100000078 Ga0068856_10000007880 391
112 3300005614 Ga0068856_100012361 Ga0068856_1000123612 391
113 3300005614 Ga0068856_100250749 Ga0068856_1002507492 391
114 3300006195 Ga0075366_10001640 Ga0075366_100016408 391
115 3300009093 Ga0105240_10527604 Ga0105240_105276042 391
116 3300010375 Ga0105239_10332778 Ga0105239_103327781 391
117 3300013100 Ga0157373_10000807 Ga0157373_1000080717 391
118 3300013105 Ga0157369_10081481 Ga0157369_100814812 391
119 3300013306 Ga0163162_10004601 Ga0163162_1000460112 391
120 3300013306 Ga0163162_10006143 Ga0163162_100061432 391
121 3300013307 Ga0157372_10000926 Ga0157372_1000092627 391
122 3300013307 Ga0157372_10002051 Ga0157372_1000205118 391
123 3300025250 Ga0209026_1003112 Ga0209026_10031124 391
124 3300025913 Ga0207695_10389702 Ga0207695_103897022 391
125 3300025949 Ga0207667_10000009 Ga0207667_10000009324 391
126 3300026078 Ga0207702_10000418 Ga0207702_100004184 391
127 3300026078 Ga0207702_10156944 Ga0207702_101569442 391
128 3300031548 Ga0307408_100001838 Ga0307408_10000183810 391
129 3300046471 Ga0495650_0000138 Ga0495650_0000138_127983_129158 391
130 3300046492 Ga0495585_0000128 Ga0495585_0000128_3142_4317 391
131 3300046507 Ga0495606_0000002 Ga0495606_0000002_211461_212636 391
132 3300046507 Ga0495606_0028205 Ga0495606_0028205_79_1254 391
133 3300046507 Ga0495606_0047513 Ga0495606_0047513_640_1815 391
134 3300046512 Ga0495610_0000307 Ga0495610_0000307_26313_27488 391
135 3300046660 Ga0495625_0000005 Ga0495625_0000005_42065_43240 391
136 3300046660 Ga0495625_0010396 Ga0495625_0010396_792_1967 391
137 3300046660 Ga0495625_0083688 Ga0495625_0083688_660_1835 391
138 3300046665 Ga0495661_0005682 Ga0495661_0005682_1211_2386 391
139 3300046665 Ga0495661_0039249 Ga0495661_0039249_924_2099 391
140 3300046694 Ga0495649_0000003 Ga0495649_0000003_42086_43261 391
141 3300046810 Ga0495660_0008644 Ga0495660_0008644_1279_2454 391
142 3300047472 Ga0495686_0062093 Ga0495686_0062093_132_1307 391
143 3300050493 nmdc:mga0k408_16_c2 nmdc:mga0k408_16_c2_74580_75755 391
144 3300050493 nmdc:mga0k408_61_c1 nmdc:mga0k408_61_c1_32891_34066 391
145 3300053125 Ga0500618_000003 Ga0500618_000003_146561_147742 391

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13641

Glyco_tranf_2_3

Glycosyltransferase like family 2

75

294

0.86

PF00535

Glycos_transf_2

Glycosyl transferase family 2

78

242

0.82

PF13632

Glyco_trans_2_3

Glycosyl transferase family group 2

156

402

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6yv9-assembly1.cif.gz_A mannosyltransferase pcmangt from pyrobaculum calidifontis in complex with gdp-man and mn2+ 0.8002 4 379
6p61-assembly3.cif.gz_C structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.798 46 249
6yv9-assembly1.cif.gz_A mannosyltransferase pcmangt from pyrobaculum calidifontis in complex with gdp-man and mn2+ 0.7938 4 379
6p61-assembly3.cif.gz_C structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.7864 46 249
6egs-assembly2.cif.gz_B crystal structure of the galnac-t2 f104s mutant in complex with udp-galnac 0.7838 46 249
ID Description Score Start End Superfamily
af_Q00973_270_470_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.869 50 164 3.90.550.10
af_Q9RQP9_29_257_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8492 37 250 3.90.550.10
af_P75905_64_287_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.849 37 249 3.90.550.10
af_Q47536_20_247_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8269 37 259 3.90.550.10
af_X1WCR3_86_406_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8205 49 290 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A2E0VTT0-F1-model_v4 Glycosyl transferase 0.9814 2 391 GO:0016020
GO:0016757
AF-A0A2E0VTT0-F1-model_v4 Glycosyl transferase 0.9765 2 391 GO:0016020
GO:0016757
AF-X0X3Z4-F1-model_v4 Glycosyltransferase 2-like domain-containing protein 0.9558 46 294 GO:0016757
AF-A0A2T5C1C0-F1-model_v4 Cellulose synthase/poly-beta-1,6-N-acetylglucosamine synthase-like glycosyltransferase 0.9544 2 390 GO:0016020
GO:0016757
AF-A0A321LR60-F1-model_v4 Glycosyltransferase family 2 protein 0.9498 2 391 GO:0016020
GO:0016757

Feature Viewer

pLDDT pTM Quality
88.42 0.86 High
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Predicted Structure (AlphaFold2)

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