F186472

General Info

Members Datasets Scaffolds Average Seq Length
142 124 142 196

Family's Representative Sequence

Representative Sequence 3300041459|Ga0451800_0861627|Ga0451800_0861627_118_783
Length 221
Sequence VSKERLKSPRARLFVALDLPESMRQGIVAWGNGELRDPALRVVAPESLHVTLAFLGYLPEREIERLGEIVRGLGAMAPALGLEDPVAKPSLRRARLFALPAISPAAVPLQREIEQKLVAERLYKPEKRPFWPHVTVARVRSAGRGSRRPAAVERAPGELPKKLLEPALCVRVTLYRSVLQPQGSRYTPLAQVELFSSGTARPCPSATERDARPARRRVRRL

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
63 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
64 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
65 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
66 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
67 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
68 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
69 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
70 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
71 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
72 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
75 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
76 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
77 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
82 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
83 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
86 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
87 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
88 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
89 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
90 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
91 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
92 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
93 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
94 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
95 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
96 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
97 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
98 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
99 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
100 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
101 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
102 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
103 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
104 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
107 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
116 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
117 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
118 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
119 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
120 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
121 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
122 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
123 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
124 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.7
Nodule 0
Rhizoplane 5.63
Rhizosphere 92.96
Stem 0
Stem Tuber 0
Unclassified 0.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100018843 3300005329 Bacteria 6123
2 Ga0070677_10000008 3300005333 Bacteria 74027
3 Ga0070680_100315353 3300005336 Bacteria 1327
4 Ga0070682_100000090 3300005337 Bacteria 82642
5 Ga0070669_100064940 3300005353 Bacteria 2688
6 Ga0070674_100000005 3300005356 Bacteria 168443
7 Ga0070674_100000023 3300005356 Bacteria 84887
8 Ga0070673_100196542 3300005364 Bacteria 1735
9 Ga0070659_100012589 3300005366 Bacteria 6273
10 Ga0070711_100002962 3300005439 Bacteria 9796
11 Ga0070700_100235991 3300005441 Bacteria 1304
12 Ga0070678_100208684 3300005456 Bacteria 1617
13 Ga0070662_100000061 3300005457 Bacteria 58911
14 Ga0070681_10279247 3300005458 Bacteria 1581
15 Ga0068867_100001394 3300005459 Bacteria 16721
16 Ga0070679_100000818 3300005530 Bacteria 26995
17 Ga0070684_100010526 3300005535 Bacteria 7331
18 Ga0070684_100054127 3300005535 Bacteria 3496
19 Ga0068853_100113354 3300005539 Bacteria 2411
20 Ga0070665_100000135 3300005548 Bacteria 138925
21 Ga0068855_100486302 3300005563 Bacteria 1343
22 Ga0068855_100564384 3300005563 Bacteria 1231
23 Ga0068854_100120537 3300005578 Bacteria 1991
24 Ga0068856_100022923 3300005614 Bacteria 6072
25 Ga0068852_100580100 3300005616 Bacteria 1124
26 Ga0068866_10000008 3300005718 Bacteria 117658
27 Ga0068866_10000262 3300005718 Bacteria 24827
28 Ga0068863_100000022 3300005841 Bacteria 188278
29 Ga0068858_100000142 3300005842 Bacteria 75787
30 Ga0068860_100009272 3300005843 Bacteria 9786
31 Ga0081455_10141664 3300005937 Unclassified 1866
32 Ga0070715_10000021 3300006163 Bacteria 119283
33 Ga0105245_10000130 3300009098 Bacteria 72166
34 Ga0105245_10000964 3300009098 Bacteria 26208
35 Ga0105242_10241440 3300009176 Bacteria 1624
36 Ga0105239_11171407 3300010375 Bacteria 885
37 Ga0157375_10565075 3300013308 Bacteria 1298
38 Ga0157380_10000660 3300014326 Bacteria 21395
39 Ga0157379_10020345 3300014968 Bacteria 5867
40 Ga0157379_10412172 3300014968 Bacteria 1243
41 Ga0163161_10000053 3300017792 Bacteria 117408
42 Ga0207682_10000091 3300025893 Bacteria 41479
43 Ga0207642_10000002 3300025899 Bacteria 658166
44 Ga0207642_10000490 3300025899 Bacteria 12147
45 Ga0207685_10000028 3300025905 Bacteria 97935
46 Ga0207707_10226254 3300025912 Bacteria 1628
47 Ga0207663_10002310 3300025916 Bacteria 9136
48 Ga0207660_10159378 3300025917 Bacteria 1740
49 Ga0207652_10000827 3300025921 Bacteria 29489
50 Ga0207681_10297840 3300025923 Bacteria 1275
51 Ga0207687_10000032 3300025927 Bacteria 143196
52 Ga0207687_10000073 3300025927 Bacteria 73917
53 Ga0207690_10093842 3300025932 Bacteria 2128
54 Ga0207706_10000250 3300025933 Bacteria 58868
55 Ga0207686_10417161 3300025934 Bacteria 1026
56 Ga0207669_10000006 3300025937 Bacteria 176348
57 Ga0207669_10000026 3300025937 Bacteria 92199
58 Ga0207689_10055937 3300025942 Bacteria 3246
59 Ga0207661_10002261 3300025944 Bacteria 13276
60 Ga0207661_10011408 3300025944 Bacteria 6438
61 Ga0207651_10097256 3300025960 Bacteria 2173
62 Ga0207712_10000058 3300025961 Bacteria 140948
63 Ga0207640_10029199 3300025981 Bacteria 3382
64 Ga0207677_10002053 3300026023 Bacteria 10608
65 Ga0207703_10000287 3300026035 Bacteria 55757
66 Ga0207702_10017712 3300026078 Bacteria 5896
67 Ga0207702_10171266 3300026078 Bacteria 1991
68 Ga0207641_10000016 3300026088 Bacteria 307363
69 Ga0207648_10000960 3300026089 Bacteria 32619
70 Ga0207683_10345626 3300026121 Bacteria 1365
71 Ga0268266_10000056 3300028379 Bacteria 289176
72 Ga0268264_10004866 3300028381 Bacteria 11380
73 Ga0373955_0471804 3300035172 Unclassified 766
74 Ga0373933_0110573 3300035724 Bacteria 1714
75 Ga0373937_0104671 3300036401 Bacteria 2629
76 Ga0451800_0861627 3300041459 Bacteria 917
77 Ga0451853_1877456 3300041512 Bacteria 2704
78 Ga0466963_0000008 3300044694 Bacteria 74916
79 Ga0495592_0000261 3300046454 Bacteria 44965
80 Ga0495603_0006406 3300046455 Bacteria 7044
81 Ga0495641_0000312 3300046461 Bacteria 39169
82 Ga0495651_0422935 3300046462 Unclassified 866
83 Ga0495653_0087435 3300046463 Bacteria 2289
84 Ga0495582_0000001 3300046473 Bacteria 252434
85 Ga0495608_0003440 3300046511 Bacteria 11338
86 Ga0495608_0011596 3300046511 Bacteria 6134
87 Ga0495618_0000014 3300046514 Bacteria 163136
88 Ga0495620_0000139 3300046515 Bacteria 59244
89 Ga0495628_0003879 3300046516 Bacteria 13328
90 Ga0495630_0001844 3300046517 Bacteria 14793
91 Ga0495630_0078854 3300046517 Bacteria 2484
92 Ga0495644_0000377 3300046523 Bacteria 20229
93 Ga0495652_0750559 3300046529 Bacteria 653
94 Ga0495586_0002318 3300046535 Bacteria 10348
95 Ga0495587_0017396 3300046536 Bacteria 4467
96 Ga0495598_0001620 3300046537 Bacteria 4514
97 Ga0495633_0023652 3300046558 Bacteria 3042
98 Ga0495668_0045069 3300046616 Bacteria 2451
99 Ga0495634_0000031 3300046642 Bacteria 110396
100 Ga0495635_0000076 3300046663 Bacteria 61665
101 Ga0495657_0022260 3300046675 Bacteria 4544
102 Ga0495599_0068612 3300046678 Bacteria 2213
103 Ga0495623_0127920 3300046679 Bacteria 1524
104 Ga0495647_0000001 3300046681 Bacteria 222371
105 Ga0495647_0004937 3300046681 Bacteria 4368
106 Ga0495658_0000002 3300046683 Bacteria 309651
107 Ga0495669_0003325 3300046684 Bacteria 6615
108 Ga0495669_0155364 3300046684 Bacteria 1084
109 Ga0495613_0000005 3300046689 Bacteria 222558
110 Ga0495624_0000724 3300046690 Bacteria 25913
111 Ga0495670_0015650 3300046691 Bacteria 3727
112 Ga0495649_0001845 3300046694 Bacteria 15537
113 Ga0495600_0010000 3300046809 Bacteria 5879
114 Ga0495581_0159783 3300047315 Unclassified 1317
115 Ga0495676_0000621 3300047321 Bacteria 29385
116 Ga0495680_0000241 3300047322 Bacteria 60168
117 Ga0495680_0005092 3300047322 Bacteria 12403
118 Ga0495673_0195868 3300047469 Unclassified 758
119 Ga0496100_0000013 3300048903 Bacteria 177476
120 Ga0496101_0000035 3300048904 Bacteria 177237
121 Ga0496106_0000062 3300048909 Bacteria 85769
122 Ga0496107_0000020 3300048910 Bacteria 148990
123 Ga0496108_0034306 3300048911 Bacteria 4215
124 Ga0496112_0000025 3300048915 Bacteria 146197
125 Ga0496114_0002081 3300048917 Bacteria 15227
126 Ga0501038_0405281 3300049574 Bacteria 1054
127 Ga0501039_0129302 3300049575 Bacteria 1982
128 Ga0501040_0190302 3300049576 Bacteria 1456
129 Ga0501041_0376938 3300049577 Bacteria 898
130 Ga0501042_0424241 3300049578 Bacteria 964
131 Ga0501075_0001540 3300049591 Bacteria 15041
132 Ga0501075_0205893 3300049591 Bacteria 1501
133 Ga0501076_0471373 3300049592 Bacteria 1034
134 Ga0501081_0087644 3300049743 Bacteria 2186
135 Ga0501045_0179019 3300049824 Bacteria 1580
136 nmdc:mga0rr50_223012_c1 3300050513 Bacteria 1557
137 Ga0495601_0000723 3300053077 Bacteria 17749
138 Ga0495612_0006475 3300053078 Bacteria 4810
139 Ga0495595_0003120 3300053084 Bacteria 6564
140 Ga0495619_0010813 3300053085 Bacteria 5744
141 Ga0495619_0158649 3300053085 Bacteria 1562
142 Ga0500614_000152 3300053123 Bacteria 17444

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300013308 Ga0157375_10565075 Ga0157375_105650752 172
2 3300050513 nmdc:mga0rr50_223012_c1 nmdc:mga0rr50_223012_c1_849_1490 172
3 3300035172 Ga0373955_0471804 Ga0373955_0471804_67_603 173
4 3300035724 Ga0373933_0110573 Ga0373933_0110573_266_832 177
5 3300046462 Ga0495651_0422935 Ga0495651_0422935_40_606 177
6 3300053085 Ga0495619_0158649 Ga0495619_0158649_624_1226 178
7 3300005439 Ga0070711_100002962 Ga0070711_1000029624 179
8 3300025916 Ga0207663_10002310 Ga0207663_100023104 179
9 3300005337 Ga0070682_100000090 Ga0070682_10000009043 181
10 3300005548 Ga0070665_100000135 Ga0070665_10000013563 181
11 3300005563 Ga0068855_100486302 Ga0068855_1004863022 181
12 3300005842 Ga0068858_100000142 Ga0068858_10000014211 181
13 3300009098 Ga0105245_10000964 Ga0105245_1000096410 181
14 3300025927 Ga0207687_10000073 Ga0207687_1000007382 181
15 3300026035 Ga0207703_10000287 Ga0207703_1000028715 181
16 3300026078 Ga0207702_10171266 Ga0207702_101712662 181
17 3300028379 Ga0268266_10000056 Ga0268266_10000056212 181
18 3300046511 Ga0495608_0003440 Ga0495608_0003440_4040_4600 181
19 3300046517 Ga0495630_0078854 Ga0495630_0078854_372_917 181
20 3300047322 Ga0495680_0000241 Ga0495680_0000241_46891_47451 181
21 3300053077 Ga0495601_0000723 Ga0495601_0000723_4068_4628 181
22 3300053084 Ga0495595_0003120 Ga0495595_0003120_2755_3315 181
23 3300005578 Ga0068854_100120537 Ga0068854_1001205372 183
24 3300005614 Ga0068856_100022923 Ga0068856_1000229232 183
25 3300026078 Ga0207702_10017712 Ga0207702_100177122 183
26 3300046515 Ga0495620_0000139 Ga0495620_0000139_20573_21139 183
27 3300049574 Ga0501038_0405281 Ga0501038_0405281_82_648 183
28 3300049575 Ga0501039_0129302 Ga0501039_0129302_602_1168 183
29 3300049576 Ga0501040_0190302 Ga0501040_0190302_590_1153 183
30 3300049577 Ga0501041_0376938 Ga0501041_0376938_83_649 183
31 3300049578 Ga0501042_0424241 Ga0501042_0424241_58_624 183
32 3300049591 Ga0501075_0205893 Ga0501075_0205893_592_1158 183
33 3300049592 Ga0501076_0471373 Ga0501076_0471373_143_709 183
34 3300049824 Ga0501045_0179019 Ga0501045_0179019_67_630 183
35 3300048915 Ga0496112_0000025 Ga0496112_0000025_72137_72724 187
36 3300005356 Ga0070674_100000005 Ga0070674_10000000576 188
37 3300005718 Ga0068866_10000262 Ga0068866_100002624 188
38 3300025899 Ga0207642_10000490 Ga0207642_100004901 188
39 3300025937 Ga0207669_10000006 Ga0207669_10000006118 188
40 3300046514 Ga0495618_0000014 Ga0495618_0000014_154863_155465 188
41 3300046809 Ga0495600_0010000 Ga0495600_0010000_1062_1664 188
42 3300010375 Ga0105239_11171407 Ga0105239_111714071 190
43 3300005937 Ga0081455_10141664 Ga0081455_101416642 194
44 3300005353 Ga0070669_100064940 Ga0070669_1000649402 195
45 3300005356 Ga0070674_100000023 Ga0070674_10000002343 195
46 3300005364 Ga0070673_100196542 Ga0070673_1001965422 195
47 3300005366 Ga0070659_100012589 Ga0070659_1000125893 195
48 3300005441 Ga0070700_100235991 Ga0070700_1002359912 195
49 3300005456 Ga0070678_100208684 Ga0070678_1002086842 195
50 3300005457 Ga0070662_100000061 Ga0070662_1000000616 195
51 3300005459 Ga0068867_100001394 Ga0068867_10000139417 195
52 3300005530 Ga0070679_100000818 Ga0070679_1000008188 195
53 3300005563 Ga0068855_100564384 Ga0068855_1005643842 195
54 3300005616 Ga0068852_100580100 Ga0068852_1005801002 195
55 3300005718 Ga0068866_10000008 Ga0068866_1000000879 195
56 3300005841 Ga0068863_100000022 Ga0068863_100000022108 195
57 3300005843 Ga0068860_100009272 Ga0068860_1000092728 195
58 3300006163 Ga0070715_10000021 Ga0070715_1000002146 195
59 3300014326 Ga0157380_10000660 Ga0157380_100006602 195
60 3300014968 Ga0157379_10412172 Ga0157379_104121722 195
61 3300025899 Ga0207642_10000002 Ga0207642_10000002590 195
62 3300025905 Ga0207685_10000028 Ga0207685_1000002879 195
63 3300025923 Ga0207681_10297840 Ga0207681_102978402 195
64 3300025932 Ga0207690_10093842 Ga0207690_100938422 195
65 3300025933 Ga0207706_10000250 Ga0207706_1000025059 195
66 3300025937 Ga0207669_10000026 Ga0207669_1000002650 195
67 3300025942 Ga0207689_10055937 Ga0207689_100559372 195
68 3300025960 Ga0207651_10097256 Ga0207651_100972562 195
69 3300025981 Ga0207640_10029199 Ga0207640_100291993 195
70 3300026023 Ga0207677_10002053 Ga0207677_100020538 195
71 3300026088 Ga0207641_10000016 Ga0207641_10000016230 195
72 3300026089 Ga0207648_10000960 Ga0207648_100009606 195
73 3300026121 Ga0207683_10345626 Ga0207683_103456261 195
74 3300028381 Ga0268264_10004866 Ga0268264_100048664 195
75 3300041459 Ga0451800_0861627 Ga0451800_0861627_118_783 195
76 3300041512 Ga0451853_1877456 Ga0451853_1877456_639_1241 195
77 3300046454 Ga0495592_0000261 Ga0495592_0000261_23890_24492 195
78 3300046455 Ga0495603_0006406 Ga0495603_0006406_2540_3142 195
79 3300046461 Ga0495641_0000312 Ga0495641_0000312_18653_19255 195
80 3300046463 Ga0495653_0087435 Ga0495653_0087435_47_649 195
81 3300046473 Ga0495582_0000001 Ga0495582_0000001_116359_116946 195
82 3300046511 Ga0495608_0011596 Ga0495608_0011596_2603_3205 195
83 3300046516 Ga0495628_0003879 Ga0495628_0003879_8469_9071 195
84 3300046517 Ga0495630_0001844 Ga0495630_0001844_7204_7806 195
85 3300046523 Ga0495644_0000377 Ga0495644_0000377_8517_9104 195
86 3300046529 Ga0495652_0750559 Ga0495652_0750559_36_638 195
87 3300046535 Ga0495586_0002318 Ga0495586_0002318_3095_3697 195
88 3300046536 Ga0495587_0017396 Ga0495587_0017396_2056_2643 195
89 3300046537 Ga0495598_0001620 Ga0495598_0001620_2793_3395 195
90 3300046558 Ga0495633_0023652 Ga0495633_0023652_1256_1858 195
91 3300046616 Ga0495668_0045069 Ga0495668_0045069_1038_1640 195
92 3300046642 Ga0495634_0000031 Ga0495634_0000031_43490_44092 195
93 3300046663 Ga0495635_0000076 Ga0495635_0000076_45656_46258 195
94 3300046675 Ga0495657_0022260 Ga0495657_0022260_3898_4500 195
95 3300046678 Ga0495599_0068612 Ga0495599_0068612_471_1073 195
96 3300046679 Ga0495623_0127920 Ga0495623_0127920_470_1072 195
97 3300046681 Ga0495647_0000001 Ga0495647_0000001_148915_149517 195
98 3300046681 Ga0495647_0004937 Ga0495647_0004937_517_1119 195
99 3300046683 Ga0495658_0000002 Ga0495658_0000002_239965_240552 195
100 3300046684 Ga0495669_0155364 Ga0495669_0155364_156_758 195
101 3300046689 Ga0495613_0000005 Ga0495613_0000005_61557_62159 195
102 3300046690 Ga0495624_0000724 Ga0495624_0000724_6947_7549 195
103 3300046691 Ga0495670_0015650 Ga0495670_0015650_993_1595 195
104 3300047315 Ga0495581_0159783 Ga0495581_0159783_536_1138 195
105 3300047322 Ga0495680_0005092 Ga0495680_0005092_4687_5289 195
106 3300047469 Ga0495673_0195868 Ga0495673_0195868_157_744 195
107 3300048911 Ga0496108_0034306 Ga0496108_0034306_2568_3170 195
108 3300049591 Ga0501075_0001540 Ga0501075_0001540_9951_10538 195
109 3300049743 Ga0501081_0087644 Ga0501081_0087644_1053_1655 195
110 3300053085 Ga0495619_0010813 Ga0495619_0010813_5010_5597 195
111 3300053123 Ga0500614_000152 Ga0500614_000152_7878_8480 195
112 3300005333 Ga0070677_10000008 Ga0070677_1000000836 198
113 3300005336 Ga0070680_100315353 Ga0070680_1003153532 198
114 3300005458 Ga0070681_10279247 Ga0070681_102792472 198
115 3300005535 Ga0070684_100054127 Ga0070684_1000541274 198
116 3300005539 Ga0068853_100113354 Ga0068853_1001133542 198
117 3300009098 Ga0105245_10000130 Ga0105245_1000013021 198
118 3300009176 Ga0105242_10241440 Ga0105242_102414402 198
119 3300014968 Ga0157379_10020345 Ga0157379_100203454 198
120 3300017792 Ga0163161_10000053 Ga0163161_1000005381 198
121 3300025893 Ga0207682_10000091 Ga0207682_1000009139 198
122 3300025912 Ga0207707_10226254 Ga0207707_102262542 198
123 3300025917 Ga0207660_10159378 Ga0207660_101593782 198
124 3300025921 Ga0207652_10000827 Ga0207652_1000082719 198
125 3300025927 Ga0207687_10000032 Ga0207687_1000003261 198
126 3300025934 Ga0207686_10417161 Ga0207686_104171612 198
127 3300025944 Ga0207661_10011408 Ga0207661_100114086 198
128 3300025961 Ga0207712_10000058 Ga0207712_1000005880 198
129 3300036401 Ga0373937_0104671 Ga0373937_0104671_609_1220 198
130 3300044694 Ga0466963_0000008 Ga0466963_0000008_6974_7615 198
131 3300046684 Ga0495669_0003325 Ga0495669_0003325_4020_4631 198
132 3300046694 Ga0495649_0001845 Ga0495649_0001845_4114_4725 198
133 3300047321 Ga0495676_0000621 Ga0495676_0000621_27981_28577 198
134 3300048903 Ga0496100_0000013 Ga0496100_0000013_104960_105571 198
135 3300048904 Ga0496101_0000035 Ga0496101_0000035_104960_105571 198
136 3300048909 Ga0496106_0000062 Ga0496106_0000062_13492_14103 198
137 3300048910 Ga0496107_0000020 Ga0496107_0000020_76109_76720 198
138 3300048917 Ga0496114_0002081 Ga0496114_0002081_7957_8568 198
139 3300005329 Ga0070683_100018843 Ga0070683_1000188434 199
140 3300005535 Ga0070684_100010526 Ga0070684_1000105266 199
141 3300025944 Ga0207661_10002261 Ga0207661_1000226111 199
142 3300053078 Ga0495612_0006475 Ga0495612_0006475_648_1283 199

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02834

LigT_PEase

LigT like Phosphoesterase

17

98

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ldj-assembly4.cif.gz_D crystal structure of e.coli ligt complexed with phosphate 0.8489 11 199
5ldo-assembly2.cif.gz_B crystal structure of e.coli ligt complexed with 3'-amp 0.8488 12 199
5ldj-assembly3.cif.gz_C crystal structure of e.coli ligt complexed with phosphate 0.8467 11 199
5ldi-assembly4.cif.gz_D crystal structure of e.coli ligt in apo form 0.8451 11 199
5ldi-assembly3.cif.gz_C crystal structure of e.coli ligt in apo form 0.8422 11 199
ID Description Score Start End Superfamily
af_Q58963_1_173_3.90.1140.10 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.807 15 195 3.90.1140.10
5h7fA00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7988 10 197 3.90.1140.10
af_Q58963_1_173_3.90.1140.10 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7943 15 195 3.90.1140.10
5ldmB00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7913 11 199 3.90.1140.10
5ldmB00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7832 11 199 3.90.1140.10
ID Description Score Start End GO Terms
AF-A0A538A539-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9353 1 199 GO:0004113
GO:0008664
AF-A0A1Q7X3U5-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9349 5 199 GO:0004113
GO:0008664
GO:0016874
AF-A0A7V9AEI5-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase 0.9329 49 199 GO:0004113
GO:0008664
AF-A0A538A539-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9307 1 199 GO:0004113
GO:0008664
AF-A0A1Q7X3U5-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9121 5 199 GO:0004113
GO:0008664
GO:0016874

Feature Viewer

pLDDT pTM Quality
89.93 0.84 High
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Predicted Structure (AlphaFold2)

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