F162599

General Info

Members Datasets Scaffolds Average Seq Length
135 113 270 675

Family's Representative Sequence

Representative Sequence 3300005543|Ga0070672_100000660|Ga0070672_1000006609
Length 727
Sequence MLESFQLSQNGNFFAPSSQAVQKATRRRSGRNVTLRVRLSWRISSSFLSFAFRAPRTVTLAMTTSTISATAPTAPVLARRILVTSALPYANGHIHLGHLVEYIQTDIWVRFQRMRGARVIYMCADDTHGTAIMIRARQEGRSEEELIRDMNAAHRRDFAGFQIVFDHYGSTNSERNREYCAEIWSALRKHDFVAEREVTQLFDPKAGVFLADRFVKGSCPKCGTPDQYGDSCDHCGSTYSPTDLKDPVSTLSGARPELKSALHLFVKIEKLRSFLTEWTQEPGRLQPEIANYLKGHFLADELRDWDVSRPAPYFGFEIPDAPGNYWYVWFDAPIGYMAATREWCDLQGESFDAWWRSENTEIYHFIGKDIVYFHTLFWPAMLHASGFPLPKRVQVHGFLTVNGEKMSKSKGTFVQAATYLEHLDPAYLRYFYATKLASKVDDLDLNLEEFAAKVNSDLVGKVVNLASRTARFVKESGLAEHYPDDGGLFREAAARGEEIAEAYEACDFARAMRQVMALADRANEYIDREEPWKLKKAPEKAGQLRDVCTVALNLYRQLIVYLAPVLPKLAEQSQKLLNASFDSFDAAQRPLLGTAVGEFEHLMQRVDPKKLEAVVAATRDAATEAGEKIDLRIARVLSAEAIKEANKLLKLTVSLGGGTTRTIFAGIKAAYTPEALIGRLVVIVANLAPRKMKFGTSEGMVIAAGPGVAEVYVLAPDSGAKPGQRVH

Samples

Sample ID Description Type Environment
1 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
17 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
18 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
19 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
20 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
21 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
22 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
30 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
31 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
32 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
33 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
34 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
35 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
38 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
39 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
40 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
41 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
42 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
43 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
44 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
45 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
46 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
47 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
48 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
49 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
50 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
51 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
52 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
53 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
56 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
57 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
58 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
59 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
62 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
63 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
64 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
65 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
66 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
67 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
68 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
70 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
71 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
72 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
73 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
74 2599185188 Pseudomonas sp. NFACC45 Isolate Rhizoplane
75 2599185212 Pseudomonas sp. NFACC15-1 Isolate Rhizoplane
76 2599185300 Pseudomonas sp. NFACC39-1 Isolate Rhizoplane
77 2599185311 Pseudomonas sp. NFACC04-2 Isolate Rhizoplane
78 2599185316 Pseudomonas sp. NFACC52 Isolate Rhizoplane
79 2599185317 Pseudomonas sp. NFACC06-1 Isolate Rhizoplane
80 2599185318 Pseudomonas sp. NFACC13-1 Isolate Rhizoplane
81 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
82 2599185322 Pseudomonas sp. NFACC14 Isolate Rhizoplane
83 2599185323 Pseudomonas sp. NFACC37-1 Isolate Rhizoplane
84 2599185325 Pseudomonas sp. NFACC56-3 Isolate Rhizoplane
85 2600254930 Pseudomonas sp. NFIX10 Isolate Rhizoplane
86 2643221571 Pseudomonas sp. Root569 Isolate Unclassified
87 2667528176 Pseudomonas sp. NFACC11-2 Isolate Rhizoplane
88 2675903515 Pseudomonas thivervalensis DSM 13194 Isolate Unclassified
89 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
90 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
91 2744054620 Pseudomonas thivervalensis LMG 21626 Isolate Unclassified
92 2791355520 Pseudomonas sp. s211(2017) Isolate Unclassified
93 2808606361 Pseudomonas sp. SJZ075 Isolate Rhizosphere
94 2808606376 Pseudomonas sp. SJZ074 Isolate Rhizosphere
95 2808606378 Pseudomonas sp. SJZ078 Isolate Rhizosphere
96 2808606380 Pseudomonas sp. SJZ085 Isolate Rhizosphere
97 2808606383 Pseudomonas sp. SJZ124 Isolate Rhizosphere
98 2808606389 Pseudomonas sp. SJZ101 Isolate Rhizosphere
99 2842805378 Pseudomonas sp. R-72599 Isolate Unclassified
100 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
101 2887630918 Psychrosphaera haliotis UCD-MCMsp1aY Isolate Unclassified
102 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
103 2919481497 Pseudomonas brassicacearum 3432 Isolate Unclassified
104 2923586266 Pseudomonas fluorescens 1550 Isolate Rhizosphere
105 2929144301 Pseudomonas sp. R-71838 Hybrid assembly Isolate Unclassified
106 2947233263 Pseudomonas synxantha W2I4 Isolate Rhizosphere
107 2952252522 Salinicola sp. DM10 Isolate Unclassified
108 8019769354 Pseudomonas sp. MSSRFD41 Isolate Rhizosphere
109 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere
110 8056148874 Pseudomonas khavaziana SWRI124 Isolate Rhizosphere
111 8056172158 Pseudomonas ekonensis COR58 Isolate Rhizosphere
112 8057160832 Larsenimonas rhizosphaerae GH2-1 Isolate Rhizosphere
113 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.37
Metatranscriptomes 0
Isolates 29.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.74
Nodule 0.74
Rhizoplane 10.37
Rhizosphere 74.07
Stem 0
Stem Tuber 0
Unclassified 0.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070672_100000660 3300005543 Bacteria 20203
2 SwRhRL2b_contig_2459908 2162886007 Bacteria 2349
3 rootH1_10032440 3300003323 Bacteria 15600
4 rootH1_10082425 3300003323 Bacteria 7194
5 Ga0065704_10083787 3300005289 Bacteria 3418
6 Ga0070682_100007187 3300005337 Bacteria 6273
7 Ga0070682_100021467 3300005337 Bacteria 3810
8 Ga0070689_100002795 3300005340 Bacteria 11463
9 Ga0070700_100034358 3300005441 Bacteria 3062
10 Ga0070685_10013208 3300005466 Bacteria 4350
11 Ga0070665_100002292 3300005548 Bacteria 21281
12 Ga0070665_100040661 3300005548 Bacteria 4673
13 Ga0068855_100001177 3300005563 Bacteria 32481
14 Ga0068855_100001578 3300005563 Bacteria 28618
15 Ga0068855_100002436 3300005563 Bacteria 22974
16 Ga0068855_100020484 3300005563 Bacteria 7930
17 Ga0068856_100091580 3300005614 Bacteria 3025
18 Ga0068859_100003990 3300005617 Bacteria 15040
19 Ga0068861_100009986 3300005719 Bacteria 6574
20 Ga0075428_100042719 3300006844 Bacteria 4984
21 Ga0097620_100003990 3300006931 Bacteria 15040
22 Ga0079104_1000202 3300006946 Bacteria 83431
23 Ga0105251_10000123 3300009011 Bacteria 77428
24 Ga0105251_10003498 3300009011 Bacteria 11362
25 Ga0105238_10000119 3300009551 Bacteria 85885
26 Ga0105238_10047091 3300009551 Bacteria 4349
27 Ga0105249_10002477 3300009553 Bacteria 15993
28 Ga0157370_10012663 3300013104 Bacteria 8735
29 Ga0157370_10029381 3300013104 Bacteria 5395
30 Ga0163163_10055222 3300014325 Bacteria 3926
31 Ga0207670_10002912 3300025936 Bacteria 9044
32 Ga0207691_10002427 3300025940 Bacteria 18246
33 Ga0207667_10003710 3300025949 Bacteria 18839
34 Ga0207667_10004888 3300025949 Bacteria 16360
35 Ga0207678_10029594 3300026067 Bacteria 4781
36 Ga0207702_10014257 3300026078 Bacteria 6601
37 Ga0207675_100010452 3300026118 Bacteria 8691
38 Ga0268266_10002308 3300028379 Bacteria 20693
39 Ga0268266_10031394 3300028379 Bacteria 4511
40 Ga0265326_10001569 3300028558 Bacteria 7980
41 Ga0316181_1035262 3300030744 Bacteria 3798
42 Ga0265320_10001206 3300031240 Bacteria 19007
43 Ga0265325_10000746 3300031241 Bacteria 23521
44 Ga0265325_10021635 3300031241 Bacteria 3530
45 Ga0265340_10005559 3300031247 Bacteria 6990
46 Ga0265339_10000487 3300031249 Bacteria 31006
47 Ga0265339_10001093 3300031249 Bacteria 20571
48 Ga0265331_10000330 3300031250 Bacteria 50816
49 Ga0265327_10006457 3300031251 Bacteria 9367
50 Ga0307509_10000018 3300031507 Bacteria 258998
51 Ga0307408_100009903 3300031548 Bacteria 6279
52 Ga0265313_10000317 3300031595 Bacteria 52472
53 Ga0307508_10002846 3300031616 Bacteria 17951
54 Ga0316575_10002881 3300031665 Bacteria 5847
55 Ga0316579_10005074 3300031691 Bacteria 5282
56 Ga0265314_10000001 3300031711 Bacteria 3792860
57 Ga0265314_10017196 3300031711 Bacteria 5682
58 Ga0265342_10005020 3300031712 Bacteria 10210
59 Ga0316576_10002817 3300031727 Bacteria 10003
60 Ga0316576_10032781 3300031727 Bacteria 3694
61 Ga0316578_10002765 3300031728 Bacteria 7815
62 Ga0316578_10003070 3300031728 Bacteria 7538
63 Ga0316577_10001634 3300031733 Bacteria 10715
64 Ga0307407_10046782 3300031903 Bacteria 2451
65 Ga0316585_10001598 3300032137 Bacteria 6006
66 Ga0316580_10001877 3300032139 Bacteria 5640
67 Ga0373927_0054405 3300035695 Bacteria 2589
68 Ga0316582_0000189 3300036647 Bacteria 19327
69 Ga0316584_0002131 3300036712 Bacteria 12389
70 Ga0316584_0042812 3300036712 Bacteria 3375
71 Ga0395905_0044989 3300037471 Bacteria 4141
72 Ga0400489_11961 3300039093 Bacteria 3623
73 Ga0400489_60097 3300039093 Bacteria 3353
74 Ga0439447_012749 3300041407 Bacteria 2405
75 Ga0451807_2658383 3300041486 Bacteria 4806
76 Ga0451853_1452957 3300041512 Bacteria 5342
77 Ga0439463_005682 3300042016 Bacteria 3098
78 Ga0451576_0000246 3300045051 Bacteria 132778
79 Ga0495627_002885 3300046453 Bacteria 7918
80 Ga0495606_0001236 3300046507 Bacteria 35710
81 Ga0495606_0009535 3300046507 Bacteria 8197
82 Ga0495631_0004340 3300046518 Bacteria 7561
83 Ga0495661_0000030 3300046665 Bacteria 171980
84 Ga0495671_0005431 3300046692 Bacteria 7460
85 Ga0495683_0000726 3300047323 Bacteria 23960
86 Ga0496121_0013520 3300048924 Bacteria 8759
87 Ga0501034_0007170 3300049571 Bacteria 11895
88 Ga0501034_0036771 3300049571 Bacteria 4959
89 Ga0501034_0077388 3300049571 Unclassified 3332
90 Ga0501073_0008454 3300049589 Bacteria 7632
91 Ga0501080_0106656 3300049742 Bacteria 2596
92 Ga0501044_0040493 3300049823 Bacteria 4856
93 Ga0500555_001518 3300053103 Bacteria 7029
94 Ga0501084_0014554 3300054114 Bacteria 6522
95 Ga0501084_0097107 3300054114 Bacteria 2474
96 2599503503 2599185188 Bacteria 6164180
97 2599613352 2599185212 Bacteria 6765997
98 2599929838 2599185300 Bacteria 6062622
99 2599995831 2599185311 Bacteria 6354990
100 2600025706 2599185316 Bacteria 6320029
101 2600028656 2599185317 Bacteria 6435722
102 2600033681 2599185318 Bacteria 6961590
103 2600040027 2599185319 Bacteria 6637840
104 2600058998 2599185322 Bacteria 6763055
105 2600068548 2599185323 Bacteria 6688755
106 2600077072 2599185325 Bacteria 6324919
107 2600357824 2600254930 Bacteria 6431253
108 2643868816 2643221571 Bacteria 6228673
109 2671125382 2667528176 Bacteria 6724917
110 2678264888 2675903515 Bacteria 6580491
111 2687239415 2684623219 Bacteria 8442773
112 2688393703 2687453341 Bacteria 6534136
113 2745005344 2744054620 Bacteria 6551379
114 2794595798 2791355520 Bacteria 5948615
115 2808854674 2808606361 Bacteria 6136259
116 2808921683 2808606376 Bacteria 6248667
117 2808934782 2808606378 Bacteria 6177535
118 2808943804 2808606380 Bacteria 6248705
119 2808963179 2808606383 Bacteria 6138645
120 2808998067 2808606389 Bacteria 6138126
121 2842806094 2842805378 Bacteria 5385175
122 2881715150 2881714928 Bacteria 2469486
123 2887632418 2887630918 Bacteria 3239855
124 2916180534 2916178963 Bacteria 5265078
125 2919484422 2919481497 Bacteria 6907839
126 2923591305 2923586266 Bacteria 6565975
127 2929148827 2929144301 Bacteria 6622272
128 2947235925 2947233263 Bacteria 6439278
129 2952256212 2952252522 Bacteria 4171745
130 8019771550 8019769354 Bacteria 6924660
131 8054359551 8054357960 Bacteria 2867777
132 8056149236 8056148874 Bacteria 6479865
133 8056172777 8056172158 Bacteria 6133900
134 8057161474 8057160832 Bacteria 3268302
135 8057804656 8057798959 Bacteria 6713499
136 Ga0070672_100000660
137 SwRhRL2b_contig_2459908
138 rootH1_10032440
139 rootH1_10082425
140 Ga0065704_10083787
141 Ga0070682_100007187
142 Ga0070682_100021467
143 Ga0070689_100002795
144 Ga0070700_100034358
145 Ga0070685_10013208
146 Ga0070665_100002292
147 Ga0070665_100040661
148 Ga0068855_100001177
149 Ga0068855_100001578
150 Ga0068855_100002436
151 Ga0068855_100020484
152 Ga0068856_100091580
153 Ga0068859_100003990
154 Ga0068861_100009986
155 Ga0075428_100042719
156 Ga0097620_100003990
157 Ga0079104_1000202
158 Ga0105251_10000123
159 Ga0105251_10003498
160 Ga0105238_10000119
161 Ga0105238_10047091
162 Ga0105249_10002477
163 Ga0157370_10012663
164 Ga0157370_10029381
165 Ga0163163_10055222
166 Ga0207670_10002912
167 Ga0207691_10002427
168 Ga0207667_10003710
169 Ga0207667_10004888
170 Ga0207678_10029594
171 Ga0207702_10014257
172 Ga0207675_100010452
173 Ga0268266_10002308
174 Ga0268266_10031394
175 Ga0265326_10001569
176 Ga0316181_1035262
177 Ga0265320_10001206
178 Ga0265325_10000746
179 Ga0265325_10021635
180 Ga0265340_10005559
181 Ga0265339_10000487
182 Ga0265339_10001093
183 Ga0265331_10000330
184 Ga0265327_10006457
185 Ga0307509_10000018
186 Ga0307408_100009903
187 Ga0265313_10000317
188 Ga0307508_10002846
189 Ga0316575_10002881
190 Ga0316579_10005074
191 Ga0265314_10000001
192 Ga0265314_10017196
193 Ga0265342_10005020
194 Ga0316576_10002817
195 Ga0316576_10032781
196 Ga0316578_10002765
197 Ga0316578_10003070
198 Ga0316577_10001634
199 Ga0307407_10046782
200 Ga0316585_10001598
201 Ga0316580_10001877
202 Ga0373927_0054405
203 Ga0316582_0000189
204 Ga0316584_0002131
205 Ga0316584_0042812
206 Ga0395905_0044989
207 Ga0400489_11961
208 Ga0400489_60097
209 Ga0439447_012749
210 Ga0451807_2658383
211 Ga0451853_1452957
212 Ga0439463_005682
213 Ga0451576_0000246
214 Ga0495627_002885
215 Ga0495606_0001236
216 Ga0495606_0009535
217 Ga0495631_0004340
218 Ga0495661_0000030
219 Ga0495671_0005431
220 Ga0495683_0000726
221 Ga0496121_0013520
222 Ga0501034_0007170
223 Ga0501034_0036771
224 Ga0501034_0077388
225 Ga0501073_0008454
226 Ga0501080_0106656
227 Ga0501044_0040493
228 Ga0500555_001518
229 Ga0501084_0014554
230 Ga0501084_0097107
231 2599503503
232 2599613352
233 2599929838
234 2599995831
235 2600025706
236 2600028656
237 2600033681
238 2600040027
239 2600058998
240 2600068548
241 2600077072
242 2600357824
243 2643868816
244 2671125382
245 2678264888
246 2687239415
247 2688393703
248 2745005344
249 2794595798
250 2808854674
251 2808921683
252 2808934782
253 2808943804
254 2808963179
255 2808998067
256 2842806094
257 2881715150
258 2887632418
259 2916180534
260 2919484422
261 2923591305
262 2929148827
263 2947235925
264 2952256212
265 8019771550
266 8054359551
267 8056149236
268 8056172777
269 8057161474
270 8057804656

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01588

tRNA_bind

Putative tRNA binding domain

631

725

0.98

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

81

470

0.96

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

78

178

0.87

PF19303

Anticodon_3

Anticodon binding domain of methionyl tRNA ligase

478

602

0.83

PF08264

Anticodon_1

Anticodon-binding domain of tRNA ligase

486

650

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3h9b-assembly1.cif.gz_A structure of a mutant methionyl-trna synthetase with modified specificity complexed with azidonorleucine 0.9745 2 543
6spr-assembly1.cif.gz_A structure of the escherichia coli methionyl-trna synthetase variant vi298 complexed with beta-methionine 0.9735 2 543
1f4l-assembly1.cif.gz_A crystal structure of the e.coli methionyl-trna synthetase complexed with methionine 0.9727 2 543
8brx-assembly1.cif.gz_A escherichia coli methionyl-trna synthetase mutant l13c,i297c complexed with beta-3-methionine 0.9724 2 543
8brv-assembly1.cif.gz_A escherichia coli methionyl-trna synthetase mutant l13m,i297c complexed with beta3-methionine. 0.9721 2 543
ID Description Score Start End Superfamily
5urbB02 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Methionyl-tRNA synthetase, Zn-domain 1.008 140 173 2.20.28.20
1pfwA01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Methionyl-tRNA synthetase, Zn-domain 0.9887 140 173 2.20.28.20
1pfuA01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Methionyl-tRNA synthetase, Zn-domain 0.9856 140 173 2.20.28.20
af_D3Z941_403_437_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.983 140 172 3.40.50.620
1pg2A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9651 2 384 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A355PCS5-F1-model_v4 Methionyl-tRNA synthetase 0.9844 2 259 GO:0004825
GO:0005524
GO:0005829
GO:0006431
AF-A0A5E6NVI9-F1-model_v4 Methionyl-tRNA synthetase 0.9835 1 135 GO:0004825
GO:0005524
GO:0005829
GO:0006431
AF-A0A847YDW7-F1-model_v4 Methionine--tRNA ligase (EC 6.1.1.10) (Methionyl-tRNA synthetase) 0.9828 1 545 GO:0004825
GO:0005524
GO:0005829
GO:0006431
AF-A0A4Q6CTB9-F1-model_v4 deleted 0.981 1 98
AF-A0A7X7KGN2-F1-model_v4 Methionyl-tRNA synthetase 0.9799 1 198 GO:0004825
GO:0005524
GO:0005829
GO:0006431

Map