F161810

General Info

Members Datasets Scaffolds Average Seq Length
135 123 79 188

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10031184|rootH1_100311841
Length 213
Sequence MSHRHRSDLLCNELHSTIVGMALEHAILVSLLEKPGSGYELARRFERSIGYFWTATHQQIYRVLKRMENDGWVAARDVPQHGRPDKKEYSVADLGRAALSSWLHDPIEPDSVRHDLAVKIRGAAFDDPTALIQEVERHRQAHRDRLAHYLAGEQRDFPAPGTKPAPPDTPLDAETELQHVVLRGGIAYERMMIGWLDDVLATLARFGPAGRAR

Samples

Sample ID Description Type Environment
1 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
2 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
3 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
4 2643221548 Streptomyces sp. Root55 Isolate Unclassified
5 2643221578 Streptomyces sp. Root63 Isolate Unclassified
6 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
7 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
8 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
9 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
10 2643221714 Streptomyces sp. Root264 Isolate Unclassified
11 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
12 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
13 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
14 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
15 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
16 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
17 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
18 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
19 2855683550 Micromonospora sp. RP3T Isolate Unclassified
20 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
21 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
22 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
23 2867428634 Streptomyces sp. RP5T Isolate Unclassified
24 2867475112 Streptomyces sp. TM32 Isolate Unclassified
25 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
26 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
27 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
28 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
29 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
30 2902582711 Micromonospora sp. AP08 Isolate Unclassified
31 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
32 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
33 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
34 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
35 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
36 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
37 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
38 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
39 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
40 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
41 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
42 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
43 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
44 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
45 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
46 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
47 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
48 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
49 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
50 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
51 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
52 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
53 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
54 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
55 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
56 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
57 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
58 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
70 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
73 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
74 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
75 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
76 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
77 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
78 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
79 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
80 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
81 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
82 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
83 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
84 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
85 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
88 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
89 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
90 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
91 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
92 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
93 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
94 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
95 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
96 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
97 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
98 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
99 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
100 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
101 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
102 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
103 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
104 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
105 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
106 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
107 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
108 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
109 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
110 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
111 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
112 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
113 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
114 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
115 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
116 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
117 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
118 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
119 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
120 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
121 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
122 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
123 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 58.52
Metatranscriptomes 0
Isolates 41.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.19
Nodule 2.22
Rhizoplane 3.7
Rhizosphere 65.19
Stem 0
Stem Tuber 0
Unclassified 23.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10031184 3300003316 Bacteria 4514
2 JGI25160J50197_1017972 3300003354 Bacteria 2219
3 Ga0070680_100765891 3300005336 Bacteria 831
4 Ga0070667_100670407 3300005367 Bacteria 958
5 Ga0068856_100504736 3300005614 Bacteria 1231
6 Ga0068860_100592664 3300005843 Bacteria 1113
7 Ga0075363_100081807 3300006048 Bacteria 1767
8 Ga0075370_10050117 3300006353 Bacteria 2368
9 Ga0105251_10028569 3300009011 Bacteria 2817
10 Ga0105250_10313054 3300009092 Bacteria 681
11 Ga0105246_10043476 3300011119 Bacteria 3049
12 Ga0157369_11123189 3300013105 Bacteria 803
13 Ga0157372_10546755 3300013307 Bacteria 1350
14 Ga0207426_1000338 3300025302 Bacteria 88019
15 Ga0207426_1002887 3300025302 Bacteria 10164
16 Ga0207713_1045452 3300025735 Bacteria 1793
17 Ga0207660_10388555 3300025917 Bacteria 1122
18 Ga0207709_10840944 3300025935 Bacteria 743
19 Ga0207691_10498815 3300025940 Bacteria 1034
20 Ga0207658_10349972 3300025986 Bacteria 1286
21 Ga0307515_10046852 3300028794 Bacteria 6594
22 Ga0307508_10010515 3300031616 Bacteria 8472
23 Ga0307516_10000946 3300031730 Bacteria 40041
24 Ga0307410_10659081 3300031852 Bacteria 879
25 Ga0307415_100187315 3300032126 Bacteria 1630
26 Ga0307510_10281621 3300033180 Bacteria 1133
27 Ga0373928_0059471 3300035084 Bacteria 921
28 Ga0373940_0012303 3300035088 Bacteria 2048
29 Ga0373942_0002171 3300035207 Bacteria 4834
30 Ga0373962_0000540 3300035242 Bacteria 8494
31 Ga0439436_0001700 3300041404 Bacteria 6436
32 Ga0439439_0008011 3300041406 Bacteria 2483
33 Ga0439439_0011371 3300041406 Bacteria 2140
34 Ga0451795_0418277 3300041456 Bacteria 1455
35 Ga0451804_0248602 3300041463 Bacteria 1400
36 Ga0451807_1894797 3300041486 Bacteria 1414
37 Ga0451837_0237888 3300041494 Bacteria 1189
38 Ga0451841_1204488 3300041498 Bacteria 1084
39 Ga0451843_0349030 3300041509 Bacteria 1172
40 Ga0451843_1122318 3300041509 Bacteria 812
41 Ga0451853_3031441 3300041512 Bacteria 1233
42 Ga0451853_4075601 3300041512 Bacteria 1034
43 Ga0439433_0000780 3300041999 Bacteria 6282
44 Ga0439448_0001956 3300042005 Bacteria 5502
45 Ga0439449_0016809 3300042007 Bacteria 2748
46 Ga0439457_001574 3300042014 Bacteria 6830
47 Ga0450903_001559 3300042138 Bacteria 4268
48 Ga0439458_0002941 3300042157 Bacteria 4090
49 Ga0439458_0009027 3300042157 Bacteria 2223
50 Ga0439458_0018360 3300042157 Bacteria 1603
51 Ga0466965_0038536 3300044683 Bacteria 2348
52 Ga0495603_0002411 3300046455 Bacteria 10993
53 Ga0495603_0011883 3300046455 Bacteria 5268
54 Ga0495629_0065290 3300046459 Bacteria 2541
55 Ga0495629_0067969 3300046459 Bacteria 2486
56 Ga0495639_0002462 3300046475 Bacteria 8091
57 Ga0495639_0150002 3300046475 Bacteria 1124
58 Ga0495594_0032640 3300046499 Bacteria 2827
59 Ga0495606_0001366 3300046507 Bacteria 33028
60 Ga0495668_0000924 3300046616 Bacteria 32766
61 Ga0495625_0002156 3300046660 Bacteria 21891
62 Ga0495588_0129968 3300046674 Bacteria 1328
63 Ga0495623_0006701 3300046679 Bacteria 7496
64 Ga0495670_0067440 3300046691 Bacteria 1806
65 Ga0495589_0030786 3300046794 Bacteria 2702
66 Ga0495604_0003944 3300047317 Bacteria 11814
67 Ga0495636_0018416 3300047318 Bacteria 2802
68 Ga0495683_0050729 3300047323 Bacteria 2076
69 Ga0495675_0018607 3300047444 Bacteria 4409
70 Ga0495685_007930 3300047447 Bacteria 3517
71 Ga0495685_011447 3300047447 Bacteria 2992
72 Ga0495685_033984 3300047447 Bacteria 1752
73 Ga0495685_039315 3300047447 Bacteria 1619
74 Ga0495626_0000130 3300048091 Bacteria 95069
75 Ga0496108_0000007 3300048911 Bacteria 351492
76 Ga0496109_0031945 3300048912 Bacteria 4729
77 Ga0496121_0171933 3300048924 Bacteria 1573
78 nmdc:mga03n38_224454_c1 3300050490 Bacteria 982
79 Ga0500600_0055189 3300053149 Bacteria 2238

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2795385470 2795784939 175
2 iso_pu_bacteria 2887478801 2887482727 176
3 iso_pu_bacteria 2891326441 2891331205 176
4 iso_pu_bacteria 8055412473 8055417479 176
5 3300005336 Ga0070680_100765891 Ga0070680_1007658911 177
6 3300025917 Ga0207660_10388555 Ga0207660_103885552 177
7 3300041512 Ga0451853_3031441 Ga0451853_3031441_584_1132 177
8 3300048911 Ga0496108_0000007 Ga0496108_0000007_177508_178050 177
9 3300005367 Ga0070667_100670407 Ga0070667_1006704072 179
10 3300005843 Ga0068860_100592664 Ga0068860_1005926642 179
11 3300025986 Ga0207658_10349972 Ga0207658_103499722 179
12 3300028794 Ga0307515_10046852 Ga0307515_100468522 179
13 iso_pu_bacteria 2902582711 2902582975 179
14 iso_pu_bacteria 8001781756 8001785611 179
15 3300025940 Ga0207691_10498815 Ga0207691_104988152 180
16 3300031730 Ga0307516_10000946 Ga0307516_100009466 180
17 3300031852 Ga0307410_10659081 Ga0307410_106590812 180
18 3300032126 Ga0307415_100187315 Ga0307415_1001873152 180
19 3300041494 Ga0451837_0237888 Ga0451837_0237888_39_590 180
20 3300041509 Ga0451843_1122318 Ga0451843_1122318_221_772 180
21 3300046475 Ga0495639_0150002 Ga0495639_0150002_546_1097 180
22 3300047447 Ga0495685_039315 Ga0495685_039315_333_875 180
23 iso_pu_bacteria 2855683550 2855684428 180
24 iso_pu_bacteria 2862178590 2862185951 180
25 3300046507 Ga0495606_0001366 Ga0495606_0001366_10401_10955 181
26 3300046616 Ga0495668_0000924 Ga0495668_0000924_21805_22359 181
27 3300046660 Ga0495625_0002156 Ga0495625_0002156_3618_4172 181
28 3300047323 Ga0495683_0050729 Ga0495683_0050729_968_1522 181
29 3300048091 Ga0495626_0000130 Ga0495626_0000130_21828_22382 181
30 iso_pu_bacteria 2784746763 2785338971 181
31 iso_pu_bacteria 2808606982 2811846069 181
32 iso_pu_bacteria 2862281513 2862281608 181
33 iso_pu_bacteria 2867475112 2867480664 181
34 iso_pu_bacteria 2873151551 2873158467 181
35 iso_pu_bacteria 2918501144 2918502011 181
36 iso_pu_bacteria 2946072368 2946072561 181
37 iso_pu_bacteria 2996221748 2996225216 181
38 iso_pu_bacteria 2997451912 2997455333 181
39 iso_pu_bacteria 2997600082 2997608640 181
40 iso_pu_bacteria 8025478263 8025483414 181
41 iso_pu_bacteria 8054160619 8054163753 181
42 3300041509 Ga0451843_0349030 Ga0451843_0349030_189_746 182
43 3300009011 Ga0105251_10028569 Ga0105251_100285692 183
44 3300025735 Ga0207713_1045452 Ga0207713_10454522 183
45 3300035242 Ga0373962_0000540 Ga0373962_0000540_5473_6033 183
46 3300041456 Ga0451795_0418277 Ga0451795_0418277_90_662 183
47 3300041463 Ga0451804_0248602 Ga0451804_0248602_515_1087 183
48 3300041486 Ga0451807_1894797 Ga0451807_1894797_56_628 183
49 3300041498 Ga0451841_1204488 Ga0451841_1204488_58_630 183
50 3300048912 Ga0496109_0031945 Ga0496109_0031945_1387_1989 183
51 3300048924 Ga0496121_0171933 Ga0496121_0171933_944_1546 183
52 3300025935 Ga0207709_10840944 Ga0207709_108409441 184
53 3300041512 Ga0451853_4075601 Ga0451853_4075601_352_906 184
54 iso_pu_bacteria 2547132111 2547409867 184
55 iso_pu_bacteria 2554235005 2554261045 184
56 iso_pu_bacteria 2582581313 2585302904 184
57 iso_pu_bacteria 2643221548 2643762556 184
58 iso_pu_bacteria 2643221578 2643904904 184
59 iso_pu_bacteria 2643221673 2644402962 184
60 iso_pu_bacteria 2643221682 2644460493 184
61 iso_pu_bacteria 2818991463 2819699203 184
62 iso_pu_bacteria 2867428634 2867432139 184
63 iso_pu_bacteria 2875391855 2875392368 184
64 iso_pu_bacteria 2935390628 2935396735 184
65 iso_pu_bacteria 2946045630 2946052489 184
66 iso_pu_bacteria 2954711539 2954712118 184
67 iso_pu_bacteria 2954721474 2954722062 184
68 iso_pu_bacteria 2954731030 2954739788 184
69 iso_pu_bacteria 2954740390 2954740956 184
70 iso_pu_bacteria 2954749733 2954758611 184
71 iso_pu_bacteria 2954759201 2954759964 184
72 iso_pu_bacteria 2966598605 2966604894 184
73 iso_pu_bacteria 3006486233 3006492783 184
74 iso_pu_bacteria 8056447290 8056454141 184
75 iso_pu_bacteria 8056667051 8056671106 184
76 3300003354 JGI25160J50197_1017972 JGI25160J50197_10179723 185
77 3300025302 Ga0207426_1002887 Ga0207426_10028872 185
78 3300035084 Ga0373928_0059471 Ga0373928_0059471_255_821 185
79 3300035088 Ga0373940_0012303 Ga0373940_0012303_667_1233 185
80 3300035207 Ga0373942_0002171 Ga0373942_0002171_3781_4347 185
81 3300041404 Ga0439436_0001700 Ga0439436_0001700_5428_5985 185
82 3300041406 Ga0439439_0008011 Ga0439439_0008011_870_1427 185
83 3300041406 Ga0439439_0011371 Ga0439439_0011371_242_799 185
84 3300041999 Ga0439433_0000780 Ga0439433_0000780_1045_1602 185
85 3300042007 Ga0439449_0016809 Ga0439449_0016809_2048_2605 185
86 3300042014 Ga0439457_001574 Ga0439457_001574_6145_6702 185
87 3300046679 Ga0495623_0006701 Ga0495623_0006701_5368_5940 185
88 3300047317 Ga0495604_0003944 Ga0495604_0003944_1759_2331 185
89 3300047444 Ga0495675_0018607 Ga0495675_0018607_704_1276 185
90 iso_pu_bacteria 2643221587 2643946943 185
91 iso_pu_bacteria 2643221677 2644435123 185
92 iso_pu_bacteria 2811994879 2812361255 186
93 iso_pu_bacteria 2852635781 2852639317 186
94 iso_pu_bacteria 2862382967 2862385980 186
95 iso_pu_bacteria 8008558824 8008558875 186
96 iso_pu_bacteria 8056829672 8056830806 186
97 3300033180 Ga0307510_10281621 Ga0307510_102816212 187
98 iso_pu_bacteria 2786546132 2786666878 187
99 iso_pu_bacteria 2954673503 2954681965 187
100 iso_pu_bacteria 2954682443 2954690961 187
101 3300006353 Ga0075370_10050117 Ga0075370_100501172 188
102 3300009092 Ga0105250_10313054 Ga0105250_103130541 188
103 3300025302 Ga0207426_1000338 Ga0207426_100033817 188
104 3300046455 Ga0495603_0002411 Ga0495603_0002411_932_1525 188
105 3300046455 Ga0495603_0011883 Ga0495603_0011883_4074_4676 188
106 3300046459 Ga0495629_0065290 Ga0495629_0065290_612_1217 188
107 3300046459 Ga0495629_0067969 Ga0495629_0067969_161_763 188
108 3300046475 Ga0495639_0002462 Ga0495639_0002462_3309_3911 188
109 3300046499 Ga0495594_0032640 Ga0495594_0032640_1366_1971 188
110 3300046674 Ga0495588_0129968 Ga0495588_0129968_23_625 188
111 3300046691 Ga0495670_0067440 Ga0495670_0067440_871_1476 188
112 3300047318 Ga0495636_0018416 Ga0495636_0018416_1864_2469 188
113 3300047447 Ga0495685_011447 Ga0495685_011447_1231_1836 188
114 3300005614 Ga0068856_100504736 Ga0068856_1005047362 189
115 3300011119 Ga0105246_10043476 Ga0105246_100434764 189
116 3300013105 Ga0157369_11123189 Ga0157369_111231892 189
117 3300013307 Ga0157372_10546755 Ga0157372_105467552 189
118 3300046794 Ga0495589_0030786 Ga0495589_0030786_1345_1914 189
119 3300047447 Ga0495685_033984 Ga0495685_033984_775_1344 189
120 iso_pu_bacteria 2877676314 2877684627 189
121 3300031616 Ga0307508_10010515 Ga0307508_100105157 190
122 3300042157 Ga0439458_0009027 Ga0439458_0009027_833_1405 190
123 3300044683 Ga0466965_0038536 Ga0466965_0038536_1632_2204 190
124 3300047447 Ga0495685_007930 Ga0495685_007930_1036_1611 191
125 3300053149 Ga0500600_0055189 Ga0500600_0055189_13_588 191
126 3300042005 Ga0439448_0001956 Ga0439448_0001956_17_616 198
127 3300042138 Ga0450903_001559 Ga0450903_001559_1570_2169 198
128 3300042157 Ga0439458_0002941 Ga0439458_0002941_929_1528 198
129 3300042157 Ga0439458_0018360 Ga0439458_0018360_94_690 198
130 iso_pu_bacteria 2946064051 2946064836 198
131 iso_pu_bacteria 2784746768 2785365867 202
132 iso_pu_bacteria 2643221714 2644627690 204
133 3300003316 rootH1_10031184 rootH1_100311841 213
134 3300006048 Ga0075363_100081807 Ga0075363_1000818072 213
135 3300050490 nmdc:mga03n38_224454_c1 nmdc:mga03n38_224454_c1_304_945 213

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

27

101

0.96

PF10400

Vir_act_alpha_C

Virulence activator alpha C-term

112

204

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5h20-assembly1.cif.gz_A-2 x-ray structure of padr-like transcription factor from bacteroid fragilis 0.9081 13 99
1xma-assembly1.cif.gz_B-2 structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8989 16 99
3elk-assembly1.cif.gz_B crystal structure of putative transcriptional regulator ta0346 from thermoplasma acidophilum 0.8984 17 99
1xma-assembly1.cif.gz_A structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8949 16 99
4rb1-assembly1.cif.gz_B-2 crystal structure of magnetospirillum gryphiswaldense msr-1 fur-mn2+-e. coli fur box 0.8943 34 92
ID Description Score Start End Superfamily
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9644 23 108 1.10.10.10
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9328 23 108 1.10.10.10
5h20A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9081 13 99 1.10.10.10
1yg2A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9048 23 108 1.10.10.10
af_Q57807_1_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9034 24 99 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2W6ZV72-F1-model_v4 PadR family transcriptional regulator 0.9537 22 106
AF-A0A352I7F9-F1-model_v4 deleted 0.9408 23 111
AF-A0A2W6ZV72-F1-model_v4 PadR family transcriptional regulator 0.9326 22 106
AF-X1DJ33-F1-model_v4 Transcription regulator PadR N-terminal domain-containing protein 0.9318 23 108
AF-A0A7W0J895-F1-model_v4 PadR family transcriptional regulator 0.9286 23 111

Feature Viewer

pLDDT pTM Quality
83.09 0.76 High
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Predicted Structure (AlphaFold2)

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