F160539

General Info

Members Datasets Scaffolds Average Seq Length
134 95 268 257

Family's Representative Sequence

Representative Sequence 3300035695|Ga0373927_0089235|Ga0373927_0089235_635_1534
Length 299
Sequence MGGRNLGGGGSKSAHLQILAVHSQICDAHHFELQSRNPSGVDVTQMDAGLIKTLIVDDEPIARSLLREELELLPEIAIVGEAANGREALQKIGKLKPDLVFLDLQMPVMSGFEVVHGLGGSSLPVIVIVTAFDQHAIQAFDAGAIDYLLKPVSEARLHKAVERAKSLLSRPSEIADRVARIASVSTPSNSAKGRKVVGRSGPDYILIDADEVLAFQAERELVWIITSKQRLLATQSLRSLEKRLGEPQFQRVHRNAIVNVNHVRKMSALSSQRWLITLSNSLQLVVSKRQAHKIRQLLQ

Samples

Sample ID Description Type Environment
1 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
19 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
20 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
35 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
53 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
54 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
55 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
60 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
64 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
65 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
66 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
67 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
68 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
69 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
70 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
71 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
72 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
75 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
76 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
77 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
78 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
79 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
80 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
81 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
82 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
83 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
84 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
85 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
86 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
87 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
88 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
91 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
92 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
93 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
94 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.24
Nodule 0
Rhizoplane 0
Rhizosphere 88.81
Stem 0
Stem Tuber 0
Unclassified 17.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373927_0089235 3300035695 Bacteria 2002
2 Ga0070680_100165872 3300005336 Bacteria 1857
3 Ga0070689_100044575 3300005340 Bacteria 3413
4 Ga0070689_100565102 3300005340 Unclassified 981
5 Ga0070688_100217501 3300005365 Bacteria 1345
6 Ga0070714_100155631 3300005435 Bacteria 2063
7 Ga0070711_100138184 3300005439 Unclassified 1824
8 Ga0070681_10000532 3300005458 Bacteria 31288
9 Ga0070706_100377663 3300005467 Bacteria 1320
10 Ga0070684_100395808 3300005535 Bacteria 1273
11 Ga0068853_100303214 3300005539 Bacteria 1477
12 Ga0070665_100126306 3300005548 Bacteria 2560
13 Ga0070704_100098680 3300005549 Bacteria 2195
14 Ga0068859_100419862 3300005617 Bacteria 1434
15 Ga0068864_100362412 3300005618 Bacteria 1370
16 Ga0068862_100204742 3300005844 Bacteria 1781
17 Ga0081539_10024704 3300005985 Bacteria 3890
18 Ga0070717_10008410 3300006028 Bacteria 7707
19 Ga0070716_100362497 3300006173 Bacteria 1030
20 Ga0070712_100645633 3300006175 Bacteria 899
21 Ga0075436_100046517 3300006914 Bacteria 2992
22 Ga0097620_100419798 3300006931 Bacteria 1434
23 Ga0075435_100023906 3300007076 Bacteria 4734
24 Ga0075435_100490097 3300007076 Bacteria 1062
25 Ga0105240_10000394 3300009093 Bacteria 81599
26 Ga0105240_10072619 3300009093 Bacteria 4252
27 Ga0105245_10050391 3300009098 Bacteria 3732
28 Ga0105245_10447575 3300009098 Bacteria 1299
29 Ga0114129_10610174 3300009147 Unclassified 1413
30 Ga0105243_10434007 3300009148 Unclassified 1228
31 Ga0105242_10019059 3300009176 Bacteria 5375
32 Ga0105242_10034404 3300009176 Unclassified 4061
33 Ga0105242_10155468 3300009176 Bacteria 1997
34 Ga0105248_10021025 3300009177 Bacteria 7231
35 Ga0105248_10223002 3300009177 Unclassified 2122
36 Ga0105237_10006760 3300009545 Bacteria 12659
37 Ga0105237_10033627 3300009545 Bacteria 5195
38 Ga0105237_10187399 3300009545 Bacteria 2069
39 Ga0105239_10013588 3300010375 Bacteria 9038
40 Ga0105239_10363128 3300010375 Bacteria 1636
41 Ga0105239_10738497 3300010375 Bacteria 1126
42 Ga0157378_10232555 3300013297 Unclassified 1757
43 Ga0163162_11214412 3300013306 Unclassified 856
44 Ga0157375_10264626 3300013308 Bacteria 1881
45 Ga0157379_10006782 3300014968 Bacteria 9900
46 Ga0157376_10126041 3300014969 Bacteria 2278
47 Ga0157376_10273475 3300014969 Bacteria 1588
48 Ga0213876_10122421 3300021384 Bacteria 1381
49 Ga0213875_10004436 3300021388 Bacteria 7710
50 Ga0213875_10051731 3300021388 Bacteria 1924
51 Ga0207684_10287680 3300025910 Bacteria 1417
52 Ga0207695_10025571 3300025913 Bacteria 6606
53 Ga0207695_10230418 3300025913 Bacteria 1757
54 Ga0207671_10011677 3300025914 Bacteria 7124
55 Ga0207693_10655450 3300025915 Unclassified 815
56 Ga0207660_10127752 3300025917 Bacteria 1932
57 Ga0207687_10238262 3300025927 Unclassified 1440
58 Ga0207687_10424414 3300025927 Bacteria 1098
59 Ga0207664_10164253 3300025929 Bacteria 1896
60 Ga0207686_10004261 3300025934 Bacteria 7670
61 Ga0207686_10327009 3300025934 Unclassified 1147
62 Ga0207670_10285792 3300025936 Bacteria 1287
63 Ga0207670_10458426 3300025936 Unclassified 1029
64 Ga0207665_10311958 3300025939 Bacteria 1178
65 Ga0207711_10260910 3300025941 Bacteria 1592
66 Ga0207661_10089885 3300025944 Unclassified 2556
67 Ga0268266_10049018 3300028379 Bacteria 3620
68 Ga0268265_10512005 3300028380 Bacteria 1133
69 Ga0265338_10167487 3300028800 Bacteria 1690
70 Ga0265330_10060341 3300031235 Bacteria 1651
71 Ga0265332_10065606 3300031238 Bacteria 1550
72 Ga0265316_10074717 3300031344 Bacteria 2608
73 Ga0307408_100565757 3300031548 Bacteria 1005
74 Ga0265313_10005773 3300031595 Bacteria 9000
75 Ga0265313_10019959 3300031595 Bacteria 3712
76 Ga0265314_10000216 3300031711 Bacteria 85672
77 Ga0265314_10013043 3300031711 Bacteria 6745
78 Ga0265314_10223137 3300031711 Unclassified 1098
79 Ga0265342_10096991 3300031712 Bacteria 1684
80 Ga0373927_0007854 3300035695 Bacteria 7215
81 Ga0373927_0038777 3300035695 Bacteria 3093
82 Ga0373927_0048012 3300035695 Bacteria 2761
83 Ga0373947_0000209 3300035725 Bacteria 32873
84 Ga0373925_0000325 3300037068 Bacteria 49853
85 Ga0373925_0188455 3300037068 Bacteria 1636
86 Ga0436364_0675673 3300037853 Bacteria 7232
87 Ga0436364_0943438 3300037853 Bacteria 1004
88 Ga0436364_1076071 3300037853 Bacteria 7571
89 Ga0436364_1256738 3300037853 Bacteria 1632
90 Ga0436364_1479209 3300037853 Bacteria 4316
91 Ga0436365_0317010 3300039437 Unclassified 1511
92 Ga0436365_0670565 3300039437 Bacteria 5918
93 Ga0436365_0720228 3300039437 Bacteria 5695
94 Ga0436363_1268268 3300039450 Bacteria 1327
95 Ga0466967_0048728 3300045976 Unclassified 3702
96 Ga0495638_0197333 3300046460 Bacteria 1138
97 Ga0495651_0016377 3300046462 Bacteria 5740
98 Ga0495580_0051157 3300046472 Bacteria 2921
99 Ga0495580_0067178 3300046472 Bacteria 2509
100 Ga0495662_0077518 3300046476 Bacteria 1614
101 Ga0495664_0061615 3300046477 Bacteria 2233
102 Ga0495664_0148146 3300046477 Unclassified 1423
103 Ga0495618_0026918 3300046514 Bacteria 3578
104 Ga0495628_0143636 3300046516 Bacteria 1820
105 Ga0495630_0031428 3300046517 Bacteria 3953
106 Ga0495652_0148245 3300046529 Bacteria 1836
107 Ga0495665_0175641 3300046531 Bacteria 1114
108 Ga0495640_0108470 3300046533 Bacteria 1816
109 Ga0495587_0228630 3300046536 Bacteria 1048
110 Ga0495645_0007504 3300046543 Bacteria 7590
111 Ga0495645_0026097 3300046543 Bacteria 4240
112 Ga0495645_0049604 3300046543 Unclassified 3057
113 Ga0495667_0039831 3300046559 Bacteria 3122
114 Ga0495634_0041305 3300046642 Bacteria 3133
115 Ga0495635_0039944 3300046663 Bacteria 3244
116 Ga0495599_0032777 3300046678 Unclassified 3262
117 Ga0495599_0126370 3300046678 Bacteria 1589
118 Ga0495623_0273495 3300046679 Unclassified 942
119 Ga0495646_0035469 3300046680 Bacteria 3094
120 Ga0495613_0317997 3300046689 Bacteria 1075
121 Ga0495600_0100506 3300046809 Bacteria 1885
122 Ga0495674_0025845 3300047319 Bacteria 5376
123 Ga0495674_0154549 3300047319 Bacteria 1922
124 Ga0495674_0382471 3300047319 Unclassified 1139
125 Ga0495684_0077492 3300047471 Bacteria 2523
126 nmdc:mga05p37_506762_c1 3300050507 Unclassified 1384
127 nmdc:mga0qj67_901404_c1 3300050509 Unclassified 697
128 nmdc:mga0n895_88567_c1 3300050512 Bacteria 3095
129 nmdc:mga0rr50_673556_c1 3300050513 Bacteria 883
130 nmdc:mga0rr50_86775_c1 3300050513 Bacteria 2428
131 nmdc:mga08x19_1337_c1 3300050514 Bacteria 15307
132 Ga0500568_0055326 3300053139 Bacteria 1549
133 Ga0500616_0000030 3300053153 Bacteria 415224
134 Ga0500616_0058042 3300053153 Bacteria 2015
135 Ga0373927_0089235
136 Ga0070680_100165872
137 Ga0070689_100044575
138 Ga0070689_100565102
139 Ga0070688_100217501
140 Ga0070714_100155631
141 Ga0070711_100138184
142 Ga0070681_10000532
143 Ga0070706_100377663
144 Ga0070684_100395808
145 Ga0068853_100303214
146 Ga0070665_100126306
147 Ga0070704_100098680
148 Ga0068859_100419862
149 Ga0068864_100362412
150 Ga0068862_100204742
151 Ga0081539_10024704
152 Ga0070717_10008410
153 Ga0070716_100362497
154 Ga0070712_100645633
155 Ga0075436_100046517
156 Ga0097620_100419798
157 Ga0075435_100023906
158 Ga0075435_100490097
159 Ga0105240_10000394
160 Ga0105240_10072619
161 Ga0105245_10050391
162 Ga0105245_10447575
163 Ga0114129_10610174
164 Ga0105243_10434007
165 Ga0105242_10019059
166 Ga0105242_10034404
167 Ga0105242_10155468
168 Ga0105248_10021025
169 Ga0105248_10223002
170 Ga0105237_10006760
171 Ga0105237_10033627
172 Ga0105237_10187399
173 Ga0105239_10013588
174 Ga0105239_10363128
175 Ga0105239_10738497
176 Ga0157378_10232555
177 Ga0163162_11214412
178 Ga0157375_10264626
179 Ga0157379_10006782
180 Ga0157376_10126041
181 Ga0157376_10273475
182 Ga0213876_10122421
183 Ga0213875_10004436
184 Ga0213875_10051731
185 Ga0207684_10287680
186 Ga0207695_10025571
187 Ga0207695_10230418
188 Ga0207671_10011677
189 Ga0207693_10655450
190 Ga0207660_10127752
191 Ga0207687_10238262
192 Ga0207687_10424414
193 Ga0207664_10164253
194 Ga0207686_10004261
195 Ga0207686_10327009
196 Ga0207670_10285792
197 Ga0207670_10458426
198 Ga0207665_10311958
199 Ga0207711_10260910
200 Ga0207661_10089885
201 Ga0268266_10049018
202 Ga0268265_10512005
203 Ga0265338_10167487
204 Ga0265330_10060341
205 Ga0265332_10065606
206 Ga0265316_10074717
207 Ga0307408_100565757
208 Ga0265313_10005773
209 Ga0265313_10019959
210 Ga0265314_10000216
211 Ga0265314_10013043
212 Ga0265314_10223137
213 Ga0265342_10096991
214 Ga0373927_0007854
215 Ga0373927_0038777
216 Ga0373927_0048012
217 Ga0373947_0000209
218 Ga0373925_0000325
219 Ga0373925_0188455
220 Ga0436364_0675673
221 Ga0436364_0943438
222 Ga0436364_1076071
223 Ga0436364_1256738
224 Ga0436364_1479209
225 Ga0436365_0317010
226 Ga0436365_0670565
227 Ga0436365_0720228
228 Ga0436363_1268268
229 Ga0466967_0048728
230 Ga0495638_0197333
231 Ga0495651_0016377
232 Ga0495580_0051157
233 Ga0495580_0067178
234 Ga0495662_0077518
235 Ga0495664_0061615
236 Ga0495664_0148146
237 Ga0495618_0026918
238 Ga0495628_0143636
239 Ga0495630_0031428
240 Ga0495652_0148245
241 Ga0495665_0175641
242 Ga0495640_0108470
243 Ga0495587_0228630
244 Ga0495645_0007504
245 Ga0495645_0026097
246 Ga0495645_0049604
247 Ga0495667_0039831
248 Ga0495634_0041305
249 Ga0495635_0039944
250 Ga0495599_0032777
251 Ga0495599_0126370
252 Ga0495623_0273495
253 Ga0495646_0035469
254 Ga0495613_0317997
255 Ga0495600_0100506
256 Ga0495674_0025845
257 Ga0495674_0154549
258 Ga0495674_0382471
259 Ga0495684_0077492
260 nmdc:mga05p37_506762_c1
261 nmdc:mga0qj67_901404_c1
262 nmdc:mga0n895_88567_c1
263 nmdc:mga0rr50_673556_c1
264 nmdc:mga0rr50_86775_c1
265 nmdc:mga08x19_1337_c1
266 Ga0500568_0055326
267 Ga0500616_0000030
268 Ga0500616_0058042

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04397

LytTR

LytTr DNA-binding domain

203

299

0.98

PF00072

Response_reg

Response regulator receiver domain

53

162

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6m8o-assembly1.cif.gz_A crystal structure of the receiver domain of lytr from staphylococcus aureus 0.9118 15 131
6m8o-assembly1.cif.gz_A crystal structure of the receiver domain of lytr from staphylococcus aureus 0.8975 15 131
2zwm-assembly1.cif.gz_B crystal structure of yycf receiver domain from bacillus subtilis 0.8933 15 132
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.8929 14 127
7od9-assembly1.cif.gz_B crystal structure of activated chey fused to the c-terminal domain of chef 0.8909 12 132
ID Description Score Start End Superfamily
af_P9WGM1_5_87_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9596 15 78 3.40.50.2300
3d6wB01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.9214 155 224 2.40.50.40
6m8oA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9118 15 131 3.40.50.2300
af_O07776_22_102_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9117 14 95 3.40.50.2300
3d6wB01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.9091 155 224 2.40.50.40
ID Description Score Start End GO Terms
AF-A0A374P912-F1-model_v4 Stage 0 sporulation protein A homolog 0.9282 12 129 GO:0000160
AF-A0A2N2CLJ4-F1-model_v4 LytTR family transcriptional regulator 0.9183 157 261 GO:0000156
GO:0003677
AF-A0A1V4H8I8-F1-model_v4 Response regulatory domain-containing protein 0.9132 14 132 GO:0000160
AF-A0A1D8JCZ0-F1-model_v4 Histidine kinase 0.911 155 261 GO:0000156
GO:0003677
GO:0016301
AF-A0A2V9CFA0-F1-model_v4 HTH LytTR-type domain-containing protein 0.9097 160 258 GO:0000156
GO:0003677

Map