F153621

General Info

Members Datasets Scaffolds Average Seq Length
132 117 264 310

Family's Representative Sequence

Representative Sequence 3300041512|Ga0451853_0605518|Ga0451853_0605518_1213_2175
Length 320
Sequence VFRVDSTANDHFDTSRFEANRNRLASLAYRLLGSAADAEDAVQDAFLHWQAADRQRIKVPEAWLTKVVTNLCLDRLRSAQARRERSVGAWLPEPLLDGDPMLGPADTFEQRESVSLAVLTLMERLSPLERAVYVLREAFSHNHAEIAEILDITDSASQQHLHRARHRITAARRGGGEVDPASARRIVEEFLAAATSGRTERLVALLTDDATAISDGAGLTEKLLRYDTPQRIAAIARAGFTSTPAKQRLAGGISAVHYALVNGAPAILFVPDGRVVGAVTFDITGGRIATVRGIAAPTRLVRLTEAWRQHGPDTPLITQW

Samples

Sample ID Description Type Environment
1 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
7 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
8 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
9 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
10 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
11 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
12 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
13 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
14 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
15 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
16 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
17 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
18 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
19 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
20 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
21 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
22 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
23 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
24 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
25 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
26 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
27 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
28 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
29 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
30 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
31 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
32 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
33 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
34 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
35 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
36 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
37 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
38 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
39 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
40 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
41 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
42 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
43 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
44 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
45 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
46 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
47 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
48 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
49 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
50 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
51 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
52 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
53 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
54 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
55 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
56 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
57 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
58 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
59 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
60 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
61 2643221578 Streptomyces sp. Root63 Isolate Unclassified
62 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
63 2643221670 Streptomyces sp. Root431 Isolate Unclassified
64 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
65 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
66 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
67 2643221692 Nocardia sp. Root136 Isolate Unclassified
68 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
69 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
70 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
71 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
72 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
73 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
74 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
75 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
76 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
77 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
78 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
79 2808606394 Promicromonospora sp. C35 Isolate Unclassified
80 2808606448 Streptomyces sp. 193411 Isolate Unclassified
81 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
82 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
83 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
84 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
85 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
86 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
87 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
88 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
89 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
90 2867428634 Streptomyces sp. RP5T Isolate Unclassified
91 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
92 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
93 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
94 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
95 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
96 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
97 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
98 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
99 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
100 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
101 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
102 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
103 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
104 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
105 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
106 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
107 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
108 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
109 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
110 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
111 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
112 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
113 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
114 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
115 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
116 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
117 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 53.79
Metatranscriptomes 0
Isolates 46.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.27
Nodule 0.76
Rhizoplane 0
Rhizosphere 63.64
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451853_0605518 3300041512 Bacteria 3600
2 rootH1_10003491 3300003316 Bacteria 18956
3 rootH2_10013574 3300003320 Bacteria 28972
4 rootL2_10033632 3300003322 Bacteria 9817
5 Ga0070668_100000391 3300005347 Bacteria 29045
6 Ga0070665_100564441 3300005548 Bacteria 1151
7 Ga0068862_100060133 3300005844 Bacteria 3263
8 Ga0207668_10001626 3300025972 Bacteria 13121
9 Ga0207668_10028934 3300025972 Bacteria 3627
10 Ga0209282_1122144 3300027666 Bacteria 1301
11 Ga0268265_10044624 3300028380 Bacteria 3302
12 Ga0307515_10010023 3300028794 Bacteria 18237
13 Ga0307511_10018329 3300030521 Bacteria 6692
14 Ga0307512_10007934 3300030522 Bacteria 10431
15 Ga0307512_10023037 3300030522 Bacteria 5573
16 Ga0316181_1184993 3300030744 Bacteria 2111
17 Ga0307516_10010715 3300031730 Bacteria 10048
18 Ga0307405_10035064 3300031731 Bacteria 2993
19 Ga0307413_10416329 3300031824 Bacteria 1057
20 Ga0307410_10180717 3300031852 Bacteria 1597
21 Ga0307416_100244549 3300032002 Bacteria 1741
22 Ga0307411_10158869 3300032005 Bacteria 1690
23 Ga0307411_10394956 3300032005 Bacteria 1142
24 Ga0307415_100025083 3300032126 Bacteria 3735
25 Ga0307510_10002275 3300033180 Bacteria 21656
26 Ga0395898_0144512 3300037466 Bacteria 2277
27 Ga0439436_0005438 3300041404 Bacteria 3902
28 Ga0439439_0004862 3300041406 Bacteria 3045
29 Ga0439465_0050244 3300041413 Bacteria 1364
30 Ga0439433_0001072 3300041999 Bacteria 5551
31 Ga0439449_0001538 3300042007 Bacteria 9032
32 Ga0439449_0009981 3300042007 Bacteria 3592
33 Ga0439457_000200 3300042014 Bacteria 15880
34 Ga0439457_002006 3300042014 Bacteria 5975
35 Ga0466972_0003384 3300044658 Bacteria 7905
36 Ga0466972_0006455 3300044658 Bacteria 5891
37 Ga0466972_0021449 3300044658 Bacteria 3219
38 Ga0466970_0003548 3300044765 Bacteria 7601
39 Ga0466960_0216804 3300044901 Bacteria 1051
40 Ga0495592_0026925 3300046454 Bacteria 4359
41 Ga0495603_0002653 3300046455 Bacteria 10546
42 Ga0495603_0054550 3300046455 Bacteria 2368
43 Ga0495629_0044959 3300046459 Bacteria 3098
44 Ga0495651_0026352 3300046462 Bacteria 4529
45 Ga0495594_0201829 3300046499 Bacteria 1133
46 Ga0495618_0112016 3300046514 Bacteria 1747
47 Ga0495628_0007322 3300046516 Bacteria 9558
48 Ga0495630_0254992 3300046517 Bacteria 1340
49 Ga0495652_0024268 3300046529 Bacteria 5370
50 Ga0495667_0049000 3300046559 Bacteria 2789
51 Ga0495635_0102495 3300046663 Bacteria 1956
52 Ga0495657_0003342 3300046675 Bacteria 13129
53 Ga0495613_0012483 3300046689 Bacteria 6313
54 Ga0495613_0110049 3300046689 Bacteria 1985
55 Ga0495613_0226880 3300046689 Bacteria 1310
56 Ga0495589_0004042 3300046794 Bacteria 7862
57 Ga0495589_0041811 3300046794 Bacteria 2285
58 Ga0495589_0085216 3300046794 Bacteria 1535
59 Ga0495604_0171991 3300047317 Bacteria 1522
60 Ga0495676_0029447 3300047321 Bacteria 4674
61 Ga0495676_0034298 3300047321 Bacteria 4260
62 Ga0495676_0118693 3300047321 Bacteria 1928
63 Ga0495680_0008083 3300047322 Bacteria 9591
64 Ga0495687_003620 3300047443 Bacteria 11040
65 Ga0495593_0089307 3300047673 Bacteria 1588
66 Ga0495614_0040691 3300048089 Bacteria 1994
67 Ga0501070_0250025 3300049586 Bacteria 1450
68 Ga0501080_0009081 3300049742 Bacteria 9045
69 Ga0500644_0045653 3300053088 Bacteria 1477
70 Ga0500651_0031740 3300053093 Bacteria 3327
71 Ga0500652_055965 3300053131 Bacteria 1617
72 2515495368 2515154088 Bacteria 5526283
73 2515720158 2515154129 Bacteria 5584369
74 2516086240 2515154202 Bacteria 5471270
75 2643899616 2643221578 Bacteria 9213798
76 2643942555 2643221587 Bacteria 7586415
77 2644386206 2643221670 Bacteria 6497041
78 2644410154 2643221673 Bacteria 9196637
79 2644430014 2643221677 Bacteria 7584031
80 2644506184 2643221690 Bacteria 4654705
81 2644514281 2643221692 Bacteria 7282860
82 2738693544 2738541272 Bacteria 6848551
83 2739323045 2738543027 Bacteria 6409078
84 2739607638 2739367654 Bacteria 6049412
85 2753070171 2751185734 Bacteria 8863695
86 2760304330 2758568522 Bacteria 5953541
87 2760621724 2758568621 Bacteria 5967089
88 2768646091 2767802112 Bacteria 6465194
89 2772643952 2772190715 Bacteria 6959372
90 2784589214 2784132148 Bacteria 8627943
91 2786666676 2786546132 Bacteria 10419719
92 2808848816 2808606359 Bacteria 9866990
93 2809026518 2808606394 Bacteria 6248540
94 2809232822 2808606448 Bacteria 8656184
95 2812476766 2811994917 Bacteria 7761064
96 2819696971 2818991463 Bacteria 7948711
97 2837270403 2837268691 Bacteria 7850704
98 2861521964 2861520306 Bacteria 8348283
99 2862294875 2862290372 Bacteria 7471434
100 2862508325 2862507626 Bacteria 9425308
101 2862707983 2862705112 Bacteria 6563286
102 2863405649 2863404153 Bacteria 9672205
103 2867352238 2867346516 Bacteria 7608576
104 2867437585 2867428634 Bacteria 9590268
105 2870730023 2870721527 Bacteria 9689237
106 2880499975 2880495981 Bacteria 7340502
107 2891398828 2891395885 Bacteria 9251614
108 2912763780 2912757875 Bacteria 7940295
109 2918505551 2918501144 Bacteria 8668083
110 2946045724 2946045630 Bacteria 8527308
111 2954681763 2954673503 Bacteria 9685905
112 2954691161 2954682443 Bacteria 9862841
113 2954700943 2954691527 Bacteria 10720516
114 2954706396 2954701450 Bacteria 10834262
115 2954711731 2954711539 Bacteria 10867210
116 2954721651 2954721474 Bacteria 10456478
117 2954740561 2954740390 Bacteria 10229294
118 2954759001 2954749733 Bacteria 10366972
119 2954759573 2954759201 Bacteria 9358192
120 2990067226 2990059506 Bacteria 9321252
121 2990090265 2990088156 Bacteria 6657676
122 3006489291 3006486233 Bacteria 8157040
123 3006497476 3006493962 Bacteria 8825450
124 8008490742 8008485437 Bacteria 7198341
125 8023623893 8023623736 Bacteria 8593882
126 8023629693 8023623736 Bacteria 8593882
127 8025525830 8025524527 Bacteria 7197316
128 8025533068 8025530807 Bacteria 8495698
129 8033684475 8033684223 Bacteria 6906479
130 8053953404 8053945823 Bacteria 8962862
131 8056058186 8056054917 Bacteria 5736694
132 8056837877 8056829672 Bacteria 9045328
133 Ga0451853_0605518
134 rootH1_10003491
135 rootH2_10013574
136 rootL2_10033632
137 Ga0070668_100000391
138 Ga0070665_100564441
139 Ga0068862_100060133
140 Ga0207668_10001626
141 Ga0207668_10028934
142 Ga0209282_1122144
143 Ga0268265_10044624
144 Ga0307515_10010023
145 Ga0307511_10018329
146 Ga0307512_10007934
147 Ga0307512_10023037
148 Ga0316181_1184993
149 Ga0307516_10010715
150 Ga0307405_10035064
151 Ga0307413_10416329
152 Ga0307410_10180717
153 Ga0307416_100244549
154 Ga0307411_10158869
155 Ga0307411_10394956
156 Ga0307415_100025083
157 Ga0307510_10002275
158 Ga0395898_0144512
159 Ga0439436_0005438
160 Ga0439439_0004862
161 Ga0439465_0050244
162 Ga0439433_0001072
163 Ga0439449_0001538
164 Ga0439449_0009981
165 Ga0439457_000200
166 Ga0439457_002006
167 Ga0466972_0003384
168 Ga0466972_0006455
169 Ga0466972_0021449
170 Ga0466970_0003548
171 Ga0466960_0216804
172 Ga0495592_0026925
173 Ga0495603_0002653
174 Ga0495603_0054550
175 Ga0495629_0044959
176 Ga0495651_0026352
177 Ga0495594_0201829
178 Ga0495618_0112016
179 Ga0495628_0007322
180 Ga0495630_0254992
181 Ga0495652_0024268
182 Ga0495667_0049000
183 Ga0495635_0102495
184 Ga0495657_0003342
185 Ga0495613_0012483
186 Ga0495613_0110049
187 Ga0495613_0226880
188 Ga0495589_0004042
189 Ga0495589_0041811
190 Ga0495589_0085216
191 Ga0495604_0171991
192 Ga0495676_0029447
193 Ga0495676_0034298
194 Ga0495676_0118693
195 Ga0495680_0008083
196 Ga0495687_003620
197 Ga0495593_0089307
198 Ga0495614_0040691
199 Ga0501070_0250025
200 Ga0501080_0009081
201 Ga0500644_0045653
202 Ga0500651_0031740
203 Ga0500652_055965
204 2515495368
205 2515720158
206 2516086240
207 2643899616
208 2643942555
209 2644386206
210 2644410154
211 2644430014
212 2644506184
213 2644514281
214 2738693544
215 2739323045
216 2739607638
217 2753070171
218 2760304330
219 2760621724
220 2768646091
221 2772643952
222 2784589214
223 2786666676
224 2808848816
225 2809026518
226 2809232822
227 2812476766
228 2819696971
229 2837270403
230 2861521964
231 2862294875
232 2862508325
233 2862707983
234 2863405649
235 2867352238
236 2867437585
237 2870730023
238 2880499975
239 2891398828
240 2912763780
241 2918505551
242 2946045724
243 2954681763
244 2954691161
245 2954700943
246 2954706396
247 2954711731
248 2954721651
249 2954740561
250 2954759001
251 2954759573
252 2990067226
253 2990090265
254 3006489291
255 3006497476
256 8008490742
257 8023623893
258 8023629693
259 8025525830
260 8025533068
261 8033684475
262 8053953404
263 8056058186
264 8056837877

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

115

168

0.95

PF04542

Sigma70_r2

Sigma-70 region 2

16

82

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9665 112 161
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9369 110 160
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9167 121 165
8a5s-assembly1.cif.gz_AAA crystal structure of light-activated dna-binding protein el222 from erythrobacter litoralis crystallized in dark, measured illuminated. 0.9147 112 161
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.8936 112 168
ID Description Score Start End Superfamily
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9701 112 161 1.10.10.10
af_P9WGH3_4_93_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9667 3 75 1.10.1740.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9665 112 161 1.10.10.10
4l5jA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9561 120 158 1.10.10.10
4go1B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9414 119 158 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3S4VHC4-F1-model_v4 ECF subfamily RNA polymerase sigma-24 factor 0.8737 4 164 GO:0003677
GO:0006352
GO:0016987
AF-A0A4R0IG28-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.8532 1 163 GO:0003677
GO:0006352
GO:0016987
AF-A0A0P9DFR5-F1-model_v4 RNA polymerase subunit sigma-24 0.8475 1 160 GO:0003677
GO:0006352
GO:0016987
AF-A0A1W0AQ21-F1-model_v4 RNA polymerase subunit sigma-70 0.8439 147 309 GO:0016987
AF-A0A4R0IG28-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.8383 1 163 GO:0003677
GO:0006352
GO:0016987

Map