F145697

General Info

Members Datasets Scaffolds Average Seq Length
130 98 258 400

Family's Representative Sequence

Representative Sequence 3300025906|Ga0207699_10000099|Ga0207699_100000999
Length 433
Sequence MTGHSGRGGRRASAGTAPGAGDGELASSQLVPRLTDQGYSARDVAARRRWVERRTGTRLTHVGRCSLASEPLRGNVENPIGAAQVPLGVAGPLAIAGEHARGIFYVPLATTEGVLVRSYERGMTALTRAGGAVTRLYTDENRVAPVFQFDDVAEARQFCLRLPELLPELQAAAAATTRHGRLLRLEPRPLGRAVMVNFCYSTADAHGMNMIAKATESACEVLVARGAARRYTIFSGMDSEKRASGALLGGGKGKQVVAGARLPARLVRAYLHATPAEMHQLWQDTVLGHLQAGAIGYNGHFANGLAALFIACGQDVANVVNSAVGVTHFEVTAEGDLYASVTLPSLTVATVGGGTGRGTARECLEMLGCAGAGGAPKLAEIAAATLLAGELSMGAALASGEFVSAHEMYGRNRPPEEAAPAEPPAPDTAEGRE

Samples

Sample ID Description Type Environment
1 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
49 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
72 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
73 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
74 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
75 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
76 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
77 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
81 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
82 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
83 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
84 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
85 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
86 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
87 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
88 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
94 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
95 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
96 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
97 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
98 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.23
Metatranscriptomes 0.77
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.54
Rhizosphere 97.69
Stem 0
Stem Tuber 0
Unclassified 10.77

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207699_10000099 3300025906 Bacteria 62157
2 Ga0065714_10064441 3300005288 Bacteria 101256
3 Ga0065712_10000007 3300005290 Bacteria 101903
4 Ga0065715_10088957 3300005293 Bacteria 20489
5 Ga0070658_10006290 3300005327 Bacteria 9618
6 Ga0070676_10023144 3300005328 Unclassified 3490
7 Ga0070666_10027194 3300005335 Bacteria 3745
8 Ga0070680_100036330 3300005336 Bacteria 3980
9 Ga0070689_100007240 3300005340 Bacteria 7737
10 Ga0070669_100000120 3300005353 Bacteria 72772
11 Ga0070675_100000107 3300005354 Bacteria 48865
12 Ga0070709_10001538 3300005434 Bacteria 12452
13 Ga0070709_10002176 3300005434 Bacteria 10612
14 Ga0070709_10033032 3300005434 Bacteria 3126
15 Ga0070714_100011069 3300005435 Bacteria 7147
16 Ga0070714_100017711 3300005435 Bacteria 5776
17 Ga0070713_100009938 3300005436 Bacteria 6851
18 Ga0070713_100048144 3300005436 Unclassified 3508
19 Ga0070713_100084979 3300005436 Bacteria 2709
20 Ga0070710_10007470 3300005437 Bacteria 5294
21 Ga0070711_100005687 3300005439 Bacteria 7473
22 Ga0070694_100000223 3300005444 Bacteria 29783
23 Ga0070685_10001866 3300005466 Bacteria 10999
24 Ga0070699_100113667 3300005518 Bacteria 2378
25 Ga0070679_100040376 3300005530 Bacteria 4643
26 Ga0070697_100000077 3300005536 Bacteria 77995
27 Ga0070697_100159852 3300005536 Bacteria 1903
28 Ga0068853_100000212 3300005539 Bacteria 41312
29 Ga0070696_100005818 3300005546 Bacteria 8228
30 Ga0070696_100073941 3300005546 Bacteria 2402
31 Ga0070696_100091662 3300005546 Unclassified 2164
32 Ga0070665_100000292 3300005548 Bacteria 79257
33 Ga0070704_100236617 3300005549 Unclassified 1493
34 Ga0070702_100001314 3300005615 Bacteria 10080
35 Ga0068859_100000346 3300005617 Bacteria 46204
36 Ga0068859_100022675 3300005617 Bacteria 6295
37 Ga0068860_100002100 3300005843 Bacteria 21003
38 Ga0068862_100003501 3300005844 Bacteria 13481
39 Ga0068862_100050480 3300005844 Bacteria 3556
40 Ga0081538_10019776 3300005981 Bacteria 4984
41 Ga0081538_10066515 3300005981 Bacteria 2020
42 Ga0070717_10036713 3300006028 Bacteria 3976
43 Ga0070716_100007765 3300006173 Bacteria 5296
44 Ga0070716_100035173 3300006173 Bacteria 2753
45 Ga0068871_100035449 3300006358 Bacteria 3965
46 Ga0075428_100052662 3300006844 Unclassified 4460
47 Ga0075431_100008394 3300006847 Bacteria 10337
48 Ga0075434_100009670 3300006871 Bacteria 9008
49 Ga0075434_100018573 3300006871 Bacteria 6719
50 Ga0075429_100009122 3300006880 Bacteria 8610
51 Ga0075436_100000006 3300006914 Bacteria 306066
52 Ga0075436_100002211 3300006914 Bacteria 13437
53 Ga0097620_100000346 3300006931 Bacteria 46204
54 Ga0097620_100003279 3300006931 Bacteria 16463
55 Ga0097620_100022673 3300006931 Bacteria 6295
56 Ga0075435_100001197 3300007076 Bacteria 16582
57 Ga0075435_100058755 3300007076 Bacteria 3116
58 Ga0111539_10000358 3300009094 Bacteria 56148
59 Ga0111539_10014348 3300009094 Bacteria 9892
60 Ga0111539_10090666 3300009094 Bacteria 3592
61 Ga0114129_10008151 3300009147 Bacteria 14932
62 Ga0114129_10056417 3300009147 Bacteria 5501
63 Ga0114129_10076956 3300009147 Bacteria 4643
64 Ga0105248_10052523 3300009177 Bacteria 4574
65 Ga0105239_10291325 3300010375 Unclassified 1838
66 Ga0157369_10000831 3300013105 Bacteria 39471
67 Ga0163162_10001656 3300013306 Bacteria 20888
68 Ga0157380_10035800 3300014326 Bacteria 3837
69 Ga0157377_10011398 3300014745 Unclassified 4436
70 Ga0207692_10029317 3300025898 Bacteria 2614
71 Ga0207680_10053754 3300025903 Bacteria 2419
72 Ga0207685_10050719 3300025905 Archaea 1600
73 Ga0207699_10000006 3300025906 Bacteria 430147
74 Ga0207699_10134869 3300025906 Archaea 1615
75 Ga0207645_10019328 3300025907 Unclassified 4467
76 Ga0207693_10012413 3300025915 Bacteria 6883
77 Ga0207663_10068270 3300025916 Unclassified 2282
78 Ga0207663_10096892 3300025916 Archaea 1971
79 Ga0207657_10023446 3300025919 Bacteria 5745
80 Ga0207681_10000101 3300025923 Bacteria 72788
81 Ga0207659_10000266 3300025926 Bacteria 31850
82 Ga0207700_10190984 3300025928 Archaea 1721
83 Ga0207686_10079464 3300025934 Bacteria 2136
84 Ga0207670_10007393 3300025936 Bacteria 6128
85 Ga0207665_10004610 3300025939 Bacteria 9153
86 Ga0207711_10030948 3300025941 Bacteria 4515
87 Ga0207708_10000100 3300026075 Bacteria 65501
88 Ga0207641_10008891 3300026088 Bacteria 8295
89 Ga0207675_100521428 3300026118 Viruses 1185
90 Ga0207428_10004106 3300027907 Bacteria 13951
91 Ga0268266_10001452 3300028379 Bacteria 28189
92 Ga0268265_10000115 3300028380 Bacteria 100719
93 Ga0268265_10026988 3300028380 Bacteria 4093
94 Ga0268264_10006162 3300028381 Bacteria 10126
95 Ga0307408_100039628 3300031548 Bacteria 3332
96 Ga0307508_10045077 3300031616 Bacteria 3941
97 Ga0373956_0041199 3300035119 Bacteria 2050
98 Ga0373961_0000144 3300035241 Bacteria 34810
99 Ga0373935_0001020 3300035692 Bacteria 15238
100 Ga0373935_0032210 3300035692 Bacteria 3256
101 Ga0373927_0002421 3300035695 Bacteria 13603
102 Ga0373947_0001237 3300035725 Bacteria 15701
103 Ga0373925_0000190 3300037068 Bacteria 66866
104 Ga0373925_0003923 3300037068 Bacteria 11352
105 Ga0395905_0005319 3300037471 Bacteria 13160
106 Ga0451577_0065369 3300042876 Bacteria 3244
107 Ga0453683_0153129 3300044673 Bacteria 1457
108 Ga0495580_0032860 3300046472 Unclassified 3739
109 Ga0495665_0036400 3300046531 Unclassified 2628
110 Ga0496112_0140379 3300048915 Bacteria 2386
111 Ga0496114_0000028 3300048917 Bacteria 177603
112 Ga0501072_0113768 3300049588 Bacteria 2155
113 Ga0501217_016791 3300049661 Unclassified 1682
114 Ga0501227_026730 3300049665 Unclassified 1362
115 Ga0501081_0069122 3300049743 Bacteria 2460
116 nmdc:mga05p37_2970_c1 3300050507 Bacteria 19691
117 nmdc:mga05p37_312055_c1 3300050507 Unclassified 1864
118 nmdc:mga06r32_4118_c2 3300050510 Bacteria 10343
119 nmdc:mga08y16_6750_c1 3300050511 Bacteria 12038
120 nmdc:mga0n895_238833_c1 3300050512 Bacteria 1844
121 nmdc:mga0n895_324406_c1 3300050512 Bacteria 1560
122 nmdc:mga0n895_476696_c1 3300050512 Bacteria 1259
123 nmdc:mga0rr50_222_c2 3300050513 Bacteria 25633
124 nmdc:mga08x19_28202_c1 3300050514 Bacteria 3515
125 nmdc:mga08x19_43_c1 3300050514 Bacteria 148391
126 Ga0501084_0291990 3300054114 Archaea 1377
127 Ga0590071_001355 3300059421 Bacteria 6504
128 Ga0590075_002472 3300059424 Bacteria 4420
129 Ga0587077_007998 3300059493 Bacteria 1560
130 Ga0207699_10000099
131 Ga0065714_10064441
132 Ga0065712_10000007
133 Ga0065715_10088957
134 Ga0070658_10006290
135 Ga0070676_10023144
136 Ga0070666_10027194
137 Ga0070680_100036330
138 Ga0070689_100007240
139 Ga0070669_100000120
140 Ga0070675_100000107
141 Ga0070709_10001538
142 Ga0070709_10002176
143 Ga0070709_10033032
144 Ga0070714_100011069
145 Ga0070714_100017711
146 Ga0070713_100009938
147 Ga0070713_100048144
148 Ga0070713_100084979
149 Ga0070710_10007470
150 Ga0070711_100005687
151 Ga0070694_100000223
152 Ga0070685_10001866
153 Ga0070699_100113667
154 Ga0070679_100040376
155 Ga0070697_100000077
156 Ga0070697_100159852
157 Ga0068853_100000212
158 Ga0070696_100005818
159 Ga0070696_100073941
160 Ga0070696_100091662
161 Ga0070665_100000292
162 Ga0070704_100236617
163 Ga0070702_100001314
164 Ga0068859_100000346
165 Ga0068859_100022675
166 Ga0068860_100002100
167 Ga0068862_100003501
168 Ga0068862_100050480
169 Ga0081538_10019776
170 Ga0081538_10066515
171 Ga0070717_10036713
172 Ga0070716_100007765
173 Ga0070716_100035173
174 Ga0068871_100035449
175 Ga0075428_100052662
176 Ga0075431_100008394
177 Ga0075434_100009670
178 Ga0075434_100018573
179 Ga0075429_100009122
180 Ga0075436_100000006
181 Ga0075436_100002211
182 Ga0097620_100000346
183 Ga0097620_100003279
184 Ga0097620_100022673
185 Ga0075435_100001197
186 Ga0075435_100058755
187 Ga0111539_10000358
188 Ga0111539_10014348
189 Ga0111539_10090666
190 Ga0114129_10008151
191 Ga0114129_10056417
192 Ga0114129_10076956
193 Ga0105248_10052523
194 Ga0105239_10291325
195 Ga0157369_10000831
196 Ga0163162_10001656
197 Ga0157380_10035800
198 Ga0157377_10011398
199 Ga0207692_10029317
200 Ga0207680_10053754
201 Ga0207685_10050719
202 Ga0207699_10000006
203 Ga0207699_10134869
204 Ga0207645_10019328
205 Ga0207693_10012413
206 Ga0207663_10068270
207 Ga0207663_10096892
208 Ga0207657_10023446
209 Ga0207681_10000101
210 Ga0207659_10000266
211 Ga0207700_10190984
212 Ga0207686_10079464
213 Ga0207670_10007393
214 Ga0207665_10004610
215 Ga0207711_10030948
216 Ga0207708_10000100
217 Ga0207641_10008891
218 Ga0207675_100521428
219 Ga0207428_10004106
220 Ga0268266_10001452
221 Ga0268265_10000115
222 Ga0268265_10026988
223 Ga0268264_10006162
224 Ga0307408_100039628
225 Ga0307508_10045077
226 Ga0373956_0041199
227 Ga0373961_0000144
228 Ga0373935_0001020
229 Ga0373935_0032210
230 Ga0373927_0002421
231 Ga0373947_0001237
232 Ga0373925_0000190
233 Ga0373925_0003923
234 Ga0395905_0005319
235 Ga0451577_0065369
236 Ga0453683_0153129
237 Ga0495580_0032860
238 Ga0495665_0036400
239 Ga0496112_0140379
240 Ga0496114_0000028
241 Ga0501072_0113768
242 Ga0501217_016791
243 Ga0501227_026730
244 Ga0501081_0069122
245 nmdc:mga05p37_2970_c1
246 nmdc:mga05p37_312055_c1
247 nmdc:mga06r32_4118_c2
248 nmdc:mga08y16_6750_c1
249 nmdc:mga0n895_238833_c1
250 nmdc:mga0n895_324406_c1
251 nmdc:mga0n895_476696_c1
252 nmdc:mga0rr50_222_c2
253 nmdc:mga08x19_28202_c1
254 nmdc:mga08x19_43_c1
255 Ga0501084_0291990
256 Ga0590071_001355
257 Ga0590075_002472
258 Ga0587077_007998

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00368

HMG-CoA_red

Hydroxymethylglutaryl-coenzyme A reductase

43

411

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6hr8-assembly1.cif.gz_A hmg-coa reductase from methanothermococcus thermolithotrophicus in complex with nadph at 2.9 a resolution 0.8796 26 390
1hwk-assembly1.cif.gz_D complex of the catalytic portion of human hmg-coa reductase with atorvastatin 0.8752 26 384
1dq8-assembly1.cif.gz_D complex of the catalytic portion of human hmg-coa reductase with hmg and coa 0.8732 26 387
2r4f-assembly1.cif.gz_B substituted pyrazoles as hepatselective hmg-coa reductase inhibitors 0.8725 28 384
2q1l-assembly1.cif.gz_A design and synthesis of pyrrole-based, hepatoselective hmg-coa reductase inhibitors 0.8714 28 384
ID Description Score Start End Superfamily
6hr7A02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.8873 70 390 3.90.770.10
6hr7A02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.8832 70 390 3.90.770.10
6hr8C03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.8669 125 223 3.30.70.420
1dq9C02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.8566 70 390 3.90.770.10
1dq9C02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.8528 70 390 3.90.770.10
ID Description Score Start End GO Terms
AF-A0A3M1NHE5-F1-model_v4 hydroxymethylglutaryl-CoA reductase (NADPH) (EC 1.1.1.34) 0.9255 48 397 GO:0004420
GO:0008299
GO:0015936
AF-A0A519Z3H2-F1-model_v4 hydroxymethylglutaryl-CoA reductase (NADPH) (EC 1.1.1.34) 0.9226 41 397 GO:0004420
GO:0008299
GO:0015936
AF-A0A3M1NHE5-F1-model_v4 hydroxymethylglutaryl-CoA reductase (NADPH) (EC 1.1.1.34) 0.9205 48 397 GO:0004420
GO:0008299
GO:0015936
AF-A0A7Y1XI55-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.919 14 255 GO:0004420
GO:0015936
AF-A0A3N5QI72-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9188 14 208 GO:0004420
GO:0015936

Map