F139889

General Info

Members Datasets Scaffolds Average Seq Length
128 114 256 781

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2728368933|2728531862
Length 855
Sequence KHYAKVEELPMFFSMKIQVSYFIYIFIVADGIAFCQQSFFYLTSFEKECIQEMMNLNEWQQEQQRLDLVKEKLTSTIVELEPKIGQLKDQAAEIRKRFWEEVTVNTSTDEDFEETFFTINQQSAVLSERERSHRRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFVDTDGLSFLVYDWRTPIASLYYDYPPGPAAYETPGGQITGTMNLKRQYQIRDGHLQHMFDSSLTIGDELLQQVLGGGADAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYKHRERLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLEYWLGSTFRLEDPFDQIEYALTRHQAQGYKARMNGIQYKASEAYLQALRGYSVWLEREGMRFVSIRFRDRVLISGEQIKTKFYSYDASIRLTNRITLVQKWLLQELARLEKKEQGADWVQEELNYLDGEQYAEAFSMLHKDRGVFDFAEKYAQIDEIMRNKRRPDEGDFDFADREEELLSRMIVKEQFKPLRRNVKQFLFVDMPGLYSQLFSEEAAYREMTNAGVPELWPEICTQTKEKLGRNELLYEDATPYLYLKELVEGNRTNTQVRHIFVDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLHGIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGEAIVPFERSGRKPTLARLESSGQRVERIAADIAALQAEGYTSIAVITKTAAGSIEAYEALASGGVKELRLITKNTPTFEKGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLMLYTAGEWTPFVQAVDTSLYELV

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
3 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
4 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
5 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
6 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
7 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
8 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
9 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
10 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
11 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
12 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
13 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
14 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
15 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
16 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
17 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
18 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
19 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
20 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
21 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
22 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
23 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
24 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
25 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
26 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
27 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
28 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
29 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
30 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
31 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
32 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
33 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
34 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
35 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
36 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
37 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
38 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
39 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
40 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
41 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
42 2600255229 Lactobacillus acidophilus A 16 Isolate Rhizosphere
43 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
44 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
45 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
46 2643221731 Bacillus sp. Root147 Isolate Unclassified
47 2643221732 Bacillus sp. Root239 Isolate Unclassified
48 2738541295 Bacillus sp. OK085 Isolate Unclassified
49 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
50 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
51 2818991441 Niallia circulans 3243 Isolate Rhizosphere
52 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
53 2842882022 Bacillus sp. R-71893 Isolate Unclassified
54 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
55 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
56 2857472729 Cohnella sp. R-74144 Isolate Unclassified
57 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
58 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
59 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
60 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
61 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
62 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
63 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
64 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
65 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
66 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
67 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
68 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
69 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
70 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
71 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
72 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
73 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
74 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
75 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
76 2919720352 Priestia megaterium 4340 Isolate Unclassified
77 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
78 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
79 2929004312 Priestia megaterium 1104 Isolate Unclassified
80 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
81 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
82 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
83 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
84 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
85 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
86 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
87 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
88 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
89 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
90 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
91 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
92 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
93 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
94 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
95 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
96 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
97 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
98 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
99 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
100 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
101 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
102 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
103 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
104 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
105 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
106 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
107 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
108 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
109 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
110 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
111 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
112 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
113 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere
114 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 33.59
Metatranscriptomes 0
Isolates 66.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.38
Nodule 0.78
Rhizoplane 5.47
Rhizosphere 39.06
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10010396 3300003322 Bacteria 13648
2 Ga0055538_1001681 3300003751 Bacteria 3911
3 Ga0055532_1002082 3300003758 Bacteria 4551
4 Ga0105243_10012570 3300009148 Bacteria 6401
5 Ga0157378_10030315 3300013297 Bacteria 4780
6 Ga0209784_100378 3300025224 Bacteria 20746
7 Ga0209566_100322 3300025225 Bacteria 43510
8 Ga0209147_100054 3300025229 Bacteria 266796
9 Ga0209147_100520 3300025229 Bacteria 22347
10 Ga0209437_100249 3300025233 Bacteria 85649
11 Ga0209025_1002235 3300025294 Bacteria 21307
12 Ga0209025_1009869 3300025294 Bacteria 6571
13 Ga0307408_100012208 3300031548 Bacteria 5685
14 Ga0439433_0005928 3300041999 Bacteria 2624
15 Ga0439449_0000202 3300042007 Bacteria 20876
16 Ga0439449_0002629 3300042007 Bacteria 6991
17 Ga0466959_0016145 3300045049 Bacteria 5450
18 Ga0495683_0015570 3300047323 Bacteria 3954
19 Ga0495626_0024257 3300048091 Bacteria 2976
20 Ga0496104_0001793 3300048907 Bacteria 18602
21 Ga0496105_0002600 3300048908 Bacteria 13135
22 Ga0496106_0000486 3300048909 Bacteria 28197
23 Ga0496107_0000190 3300048910 Bacteria 31945
24 Ga0496108_0009110 3300048911 Bacteria 8035
25 Ga0496113_0003448 3300048916 Bacteria 9465
26 Ga0496116_0007710 3300048919 Bacteria 9487
27 Ga0496116_0009518 3300048919 Bacteria 8273
28 Ga0496116_0012938 3300048919 Bacteria 6772
29 Ga0496116_0022906 3300048919 Bacteria 4663
30 Ga0496117_0015778 3300048920 Bacteria 6413
31 Ga0496120_0001330 3300048923 Bacteria 30479
32 Ga0496122_0011209 3300048925 Bacteria 9116
33 Ga0496124_0000432 3300048927 Bacteria 74430
34 Ga0496124_0000456 3300048927 Bacteria 71405
35 Ga0496125_0000188 3300048928 Bacteria 134959
36 Ga0496125_0003702 3300048928 Bacteria 18248
37 Ga0496125_0054542 3300048928 Bacteria 3265
38 Ga0496126_0007760 3300048929 Bacteria 11695
39 Ga0496126_0013962 3300048929 Bacteria 8144
40 Ga0501208_000067 3300049655 Bacteria 5946
41 Ga0500566_0000893 3300053094 Bacteria 17036
42 Ga0500637_0001097 3300053178 Bacteria 11161
43 Ga0500637_0001377 3300053178 Bacteria 10322
44 2728531862 2728368933 Bacteria 7044283
45 2512729445 2512564039 Bacteria 8739048
46 2524190756 2524023129 Bacteria 6762600
47 2550904815 2548877040 Bacteria 7507281
48 2573040173 2571042588 Bacteria 5045676
49 2578339333 2576861424 Bacteria 5270569
50 2580931493 2579778775 Bacteria 5360914
51 2587737425 2585428059 Bacteria 8696589
52 2595315709 2593339198 Bacteria 7267884
53 2601446301 2600255229 Bacteria 1988965
54 2601638761 2600255286 Bacteria 5390125
55 2621277789 2619619294 Bacteria 5575484
56 2643735913 2643221543 Bacteria 6628015
57 2644716433 2643221731 Bacteria 5623886
58 2644723696 2643221732 Bacteria 5756404
59 2738817599 2738541295 Bacteria 5730091
60 2753810237 2751185905 Bacteria 6142767
61 2793181697 2791355222 Bacteria 5898266
62 2819568219 2818991441 Bacteria 5062707
63 2819709901 2818991465 Bacteria 5388835
64 2842883820 2842882022 Bacteria 6158489
65 2857456151 2857453340 Bacteria 8090534
66 2857470452 2857465823 Bacteria 6772595
67 2857476181 2857472729 Bacteria 6568124
68 2857594166 2857591370 Bacteria 6569758
69 2864734800 2864733723 Bacteria 6770668
70 2865000847 2864997549 Bacteria 5139696
71 2865004906 2865002811 Bacteria 6333767
72 2865006080 2865002811 Bacteria 6333767
73 2881639919 2881636855 Bacteria 5205297
74 2888578799 2888578766 Bacteria 6743310
75 2889045504 2889042446 Bacteria 7618936
76 2889054254 2889049205 Bacteria 7524325
77 2889299295 2889295896 Bacteria 4704906
78 2904117956 2904113452 Bacteria 7796941
79 2904118138 2904113452 Bacteria 7796941
80 2904164590 2904162308 Bacteria 7086713
81 2904492376 2904490793 Bacteria 7046938
82 2904525150 2904524088 Bacteria 5887454
83 2904761469 2904755435 Bacteria 7986759
84 2907206916 2907202186 Bacteria 6632024
85 2919146262 2919143609 Bacteria 6219228
86 2919161600 2919160200 Bacteria 6929020
87 2919415088 2919414237 Bacteria 5429133
88 2919518184 2919517244 Bacteria 5858162
89 2919722544 2919720352 Bacteria 5986006
90 2925326776 2925326138 Bacteria 9652120
91 2928096897 2928093941 Bacteria 5965005
92 2929005700 2929004312 Bacteria 5678476
93 2929209103 2929206907 Bacteria 5918291
94 2931388937 2931384279 Bacteria 7299545
95 2936366980 2936361878 Bacteria 5632809
96 2939681873 2939679117 Bacteria 6921672
97 2945992491 2945991243 Bacteria 7008369
98 2946055239 2946053406 Bacteria 6978655
99 2960320171 2960319331 Bacteria 5502575
100 2960379417 2960375949 Bacteria 5361395
101 2968558649 2968558590 Bacteria 6956864
102 2971411956 2971410472 Bacteria 8311090
103 2971514059 2971511577 Bacteria 5404012
104 2977257107 2977254563 Bacteria 4828420
105 2980180268 2980176882 Bacteria 5397533
106 2980185776 2980182181 Bacteria 9454109
107 2981288935 2981284811 Bacteria 4641497
108 2981293613 2981289755 Bacteria 4641509
109 2981984542 2981980479 Bacteria 4641628
110 2981989330 2981985349 Bacteria 4641497
111 2988227302 2988225383 Bacteria 7221625
112 2990278001 2990275345 Bacteria 4887158
113 2996638681 2996632988 Bacteria 6921523
114 3001898259 3001892409 Bacteria 6328293
115 8002318821 8002317523 Bacteria 8051857
116 8022895546 8022893055 Bacteria 5300455
117 8022916679 8022914991 Bacteria 5584517
118 8022952940 8022948649 Bacteria 5366783
119 8046996558 8046991243 Bacteria 8497463
120 8054282170 8054280661 Bacteria 4232245
121 8054466438 8054465665 Bacteria 7323556
122 8054798586 8054795415 Bacteria 9785225
123 8055634963 8055632911 Bacteria 5283357
124 8056537998 8056533031 Bacteria 8964429
125 8057477172 8057473075 Bacteria 5892720
126 8057634448 8057632132 Bacteria 4726859
127 8057978275 8057977335 Bacteria 5694872
128 8057978600 8057977335 Bacteria 5694872
129 rootL2_10010396
130 Ga0055538_1001681
131 Ga0055532_1002082
132 Ga0105243_10012570
133 Ga0157378_10030315
134 Ga0209784_100378
135 Ga0209566_100322
136 Ga0209147_100054
137 Ga0209147_100520
138 Ga0209437_100249
139 Ga0209025_1002235
140 Ga0209025_1009869
141 Ga0307408_100012208
142 Ga0439433_0005928
143 Ga0439449_0000202
144 Ga0439449_0002629
145 Ga0466959_0016145
146 Ga0495683_0015570
147 Ga0495626_0024257
148 Ga0496104_0001793
149 Ga0496105_0002600
150 Ga0496106_0000486
151 Ga0496107_0000190
152 Ga0496108_0009110
153 Ga0496113_0003448
154 Ga0496116_0007710
155 Ga0496116_0009518
156 Ga0496116_0012938
157 Ga0496116_0022906
158 Ga0496117_0015778
159 Ga0496120_0001330
160 Ga0496122_0011209
161 Ga0496124_0000432
162 Ga0496124_0000456
163 Ga0496125_0000188
164 Ga0496125_0003702
165 Ga0496125_0054542
166 Ga0496126_0007760
167 Ga0496126_0013962
168 Ga0501208_000067
169 Ga0500566_0000893
170 Ga0500637_0001097
171 Ga0500637_0001377
172 2728531862
173 2512729445
174 2524190756
175 2550904815
176 2573040173
177 2578339333
178 2580931493
179 2587737425
180 2595315709
181 2601446301
182 2601638761
183 2621277789
184 2643735913
185 2644716433
186 2644723696
187 2738817599
188 2753810237
189 2793181697
190 2819568219
191 2819709901
192 2842883820
193 2857456151
194 2857470452
195 2857476181
196 2857594166
197 2864734800
198 2865000847
199 2865004906
200 2865006080
201 2881639919
202 2888578799
203 2889045504
204 2889054254
205 2889299295
206 2904117956
207 2904118138
208 2904164590
209 2904492376
210 2904525150
211 2904761469
212 2907206916
213 2919146262
214 2919161600
215 2919415088
216 2919518184
217 2919722544
218 2925326776
219 2928096897
220 2929005700
221 2929209103
222 2931388937
223 2936366980
224 2939681873
225 2945992491
226 2946055239
227 2960320171
228 2960379417
229 2968558649
230 2971411956
231 2971514059
232 2977257107
233 2980180268
234 2980185776
235 2981288935
236 2981293613
237 2981984542
238 2981989330
239 2988227302
240 2990278001
241 2996638681
242 3001898259
243 8002318821
244 8022895546
245 8022916679
246 8022952940
247 8046996558
248 8054282170
249 8054466438
250 8054798586
251 8055634963
252 8056537998
253 8057477172
254 8057634448
255 8057978275
256 8057978600

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13538

UvrD_C_2

UvrD-like helicase C-terminal domain

785

835

0.87

PF00580

UvrD-helicase

UvrD/REP helicase N-terminal domain

425

660

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vsx-assembly1.cif.gz_A x-ray crystal structure of the c-terminal domain of bacillus subtilis rna polymerase binding helicase held 0.9493 583 748
6vsx-assembly1.cif.gz_A x-ray crystal structure of the c-terminal domain of bacillus subtilis rna polymerase binding helicase held 0.9435 583 748
3dmn-assembly1.cif.gz_A the crystal structure of the c-terminal domain of a possilbe dna helicase from lactobacillus plantarun wcfs1 0.8937 581 747
3dmn-assembly1.cif.gz_A the crystal structure of the c-terminal domain of a possilbe dna helicase from lactobacillus plantarun wcfs1 0.8727 581 747
8iyj-assembly1.cif.gz_U9 cryo-em structure of the 48-nm repeat doublet microtubule from mouse sperm 0.827 4 94
ID Description Score Start End Superfamily
3dmnA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8823 581 747 3.40.50.300
4iloB00 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.8697 5 94 1.10.287.1490
3dmnA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8614 581 747 3.40.50.300
2is4A03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8607 580 748 3.40.50.300
af_G5ECW3_739_869_1.10.287.1490 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.856 13 94 1.10.287.1490
ID Description Score Start End GO Terms
AF-R8HZ16-F1-model_v4 Uncharacterized protein 0.9694 574 748 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0009378
GO:0016787
GO:0036121
GO:0061749
GO:1990518
AF-A0A6B0Q4Y8-F1-model_v4 deleted 0.9684 511 748
AF-T1C1Q3-F1-model_v4 UvrD/REP helicase 0.9663 639 748 GO:0009378
GO:0036121
GO:0061749
GO:1990518
AF-A0A2N8GU12-F1-model_v4 deleted 0.9605 522 701
AF-A0A553ZTR4-F1-model_v4 AAA family ATPase 0.9577 1 748 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0009378
GO:0016787
GO:0036121
GO:0061749
GO:1990518

Map