F120467

General Info

Members Datasets Scaffolds Average Seq Length
123 109 246 856

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919391150|2919395597
Length 914
Sequence PLPQDAPEDALAPSAPFSLQAIGTRLVFAESLAELASVLQKQGDGGAAVVQAPPGTGKTTLVPPLVANLAHAAAKDAKPRIVVTQPRRVAARSAARRLASLDGTKLGDRVGYTVRGERQAGPGTLIEFVTPGILLRRLLADPGLDGTAAVILDEVHERGLETDLLLGLLAEVRQLRGDLMLVAMSATLDAPRFAALLGADSGREQSQEADGGGPAPVVDCPSALHPLETAWAPAPVARLDSRGVTRAFLDHVADTAAASYAEALASDAGADALVFLPGAWEVSHVAGRLRTRVGPGVEILELHGQVSPAAQDRAVSGRQPGDPARIIVSTGLAESSLTVPGVRLVVDAGLSREPRRDAGRGMTGLVTVSCSRASAEQRAGRAARQGPGKVVRCYDQKTLGAAPAHQTPEIAVSDLTGAALILACWGSPGGRGLALPDAPPQAAMGDAVEVLRELGAVTEDGHATDLGKALARIPADPRLGRALLVGSALLGGGSTGRAGSGSKGYGTAAEVVAAVAGDQRANGADLPRLVSALRSGKDPASKRWAEEARRLDTLAREAGTRVGLPSVDVPVLDVPVLAVPAGTAEQIGLVVALAFPDRVARRVPGDGPERYLLTSGTRAGLPAGSPLAGHEWLAVAEVARADGRDAAGTGAVIRSAAPLTADTAEAAAAHLLLDSLEATFSQGRVTARRERRLGAISLSSTPVQASAAEARAAVARALEEQGLGAIGWSTAADGLRRRLALLHRELGDPWPDMSEQSLLSRLGNWLGPELEALAGGAATSGIDLTDPLRRLLPWPDAARLGELAPEFLEVPSGSRVRIDYPAAGDDGGRPVVAVKLQECFGWDRTPRLAGGRVAVQFHLLSPARRPLAVTDDLASFWSGPYAQVRAEMRGRYPKHPWPEDPWTATATARTNSRK

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
3 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
4 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
5 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
6 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
7 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
8 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
9 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
10 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
11 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
14 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
15 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
16 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
17 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
18 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
19 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
20 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
21 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
22 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
23 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
24 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
25 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
26 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
27 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
28 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
29 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
30 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
31 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
32 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
33 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
34 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
35 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
36 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
37 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
38 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
39 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
40 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
41 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
42 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
43 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
44 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
45 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
46 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
47 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
48 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
49 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
50 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
51 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
52 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
53 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
54 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
55 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
56 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
57 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
58 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
61 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
62 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
63 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
64 2643221553 Microbacterium sp. Root553 Isolate Unclassified
65 2643221630 Microbacterium sp. Root322 Isolate Unclassified
66 2643221649 Leifsonia sp. Root4 Isolate Unclassified
67 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
68 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
69 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
70 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
71 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
72 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
73 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
74 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
75 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
76 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
77 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
78 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
79 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
80 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
81 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
82 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
83 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
84 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
85 2910809715 Paenarthrobacter sp. CM16 Isolate Unclassified
86 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
87 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
88 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
89 2920879853 Kocuria salina CV6 Isolate Unclassified
90 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
91 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
92 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
93 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
94 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
95 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
96 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
97 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
98 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
99 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
100 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
101 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
102 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
103 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
104 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
105 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
106 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
107 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
108 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
109 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60.16
Metatranscriptomes 0
Isolates 39.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.44
Nodule 0
Rhizoplane 9.76
Rhizosphere 65.04
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10150901 3300003322 Bacteria 12762
2 Ga0075364_10008121 3300006051 Bacteria 6260
3 Ga0105244_10004962 3300009036 Bacteria 8986
4 Ga0105244_10009167 3300009036 Bacteria 6108
5 Ga0105246_10000197 3300011119 Bacteria 30217
6 Ga0157369_10009358 3300013105 Bacteria 11204
7 Ga0163162_10038575 3300013306 Bacteria 4768
8 Ga0157375_10046328 3300013308 Bacteria 4238
9 Ga0209646_1000041 3300025246 Bacteria 346024
10 Ga0209129_1000067 3300025258 Bacteria 219974
11 Ga0209025_1001206 3300025294 Bacteria 36302
12 Ga0207691_10000490 3300025940 Bacteria 39324
13 Ga0207683_10010008 3300026121 Bacteria 8093
14 Ga0307408_100004315 3300031548 Bacteria 9651
15 Ga0307408_100004865 3300031548 Bacteria 9047
16 Ga0307408_100010922 3300031548 Bacteria 5993
17 Ga0307405_10009273 3300031731 Bacteria 5037
18 Ga0307405_10012507 3300031731 Bacteria 4497
19 Ga0307410_10020386 3300031852 Bacteria 4054
20 Ga0307406_10000131 3300031901 Bacteria 44247
21 Ga0307406_10000171 3300031901 Bacteria 38853
22 Ga0307412_10001696 3300031911 Bacteria 12177
23 Ga0307409_100027458 3300031995 Bacteria 4034
24 Ga0307416_100015648 3300032002 Bacteria 5245
25 Ga0439436_0004868 3300041404 Bacteria 4121
26 Ga0439436_0005075 3300041404 Bacteria 4031
27 Ga0439438_000781 3300041405 Bacteria 14164
28 Ga0439438_010896 3300041405 Bacteria 2855
29 Ga0439466_0001967 3300041411 Bacteria 8058
30 Ga0439465_0012961 3300041413 Bacteria 2606
31 Ga0439433_0000313 3300041999 Bacteria 8432
32 Ga0439442_000005 3300042002 Bacteria 63657
33 Ga0439432_001469 3300042006 Bacteria 8847
34 Ga0439449_0005667 3300042007 Bacteria 4776
35 Ga0439452_003086 3300042010 Bacteria 5911
36 Ga0439457_002462 3300042014 Bacteria 5284
37 Ga0439462_0000700 3300042015 Bacteria 6865
38 Ga0450920_000026 3300042122 Bacteria 17572
39 Ga0450907_000490 3300042146 Bacteria 11017
40 Ga0439434_0000599 3300042435 Bacteria 10389
41 Ga0439434_0000832 3300042435 Bacteria 8906
42 Ga0495627_001534 3300046453 Bacteria 13258
43 Ga0495580_0004819 3300046472 Bacteria 11294
44 Ga0495580_0007396 3300046472 Bacteria 8832
45 Ga0495639_0000345 3300046475 Bacteria 22410
46 Ga0495665_0001116 3300046531 Bacteria 14217
47 Ga0495665_0011055 3300046531 Bacteria 4885
48 Ga0495586_0004643 3300046535 Bacteria 7343
49 Ga0495645_0022897 3300046543 Bacteria 4521
50 Ga0495656_0000346 3300046615 Bacteria 15725
51 Ga0495588_0003128 3300046674 Bacteria 7159
52 Ga0495623_0010521 3300046679 Bacteria 5988
53 Ga0495670_0001080 3300046691 Bacteria 13234
54 Ga0495581_0002288 3300047315 Bacteria 10777
55 Ga0496100_0002643 3300048903 Bacteria 9141
56 Ga0496101_0001255 3300048904 Bacteria 15186
57 Ga0496102_0007210 3300048905 Bacteria 9494
58 Ga0496102_0055935 3300048905 Bacteria 3598
59 Ga0496106_0001719 3300048909 Bacteria 16333
60 Ga0496107_0005253 3300048910 Bacteria 8839
61 Ga0496107_0009833 3300048910 Bacteria 6632
62 Ga0496108_0029407 3300048911 Bacteria 4549
63 Ga0496110_0019893 3300048913 Bacteria 5657
64 Ga0496111_0004870 3300048914 Bacteria 8522
65 Ga0496112_0006126 3300048915 Bacteria 10515
66 Ga0496112_0008964 3300048915 Bacteria 8980
67 Ga0496117_0003873 3300048920 Bacteria 17004
68 Ga0496118_0037098 3300048921 Bacteria 3929
69 Ga0496125_0002143 3300048928 Bacteria 26444
70 Ga0496126_0000737 3300048929 Bacteria 59387
71 Ga0496126_0038267 3300048929 Bacteria 4466
72 Ga0501034_0000016 3300049571 Bacteria 289751
73 Ga0501037_0007493 3300049573 Bacteria 7987
74 Ga0501038_0043162 3300049574 Bacteria 3923
75 2919395597 2919391150 Bacteria 4884741
76 2587861957 2585428094 Bacteria 3604039
77 2643734618 2643221542 Bacteria 3563959
78 2643783787 2643221553 Bacteria 3544260
79 2644172743 2643221630 Bacteria 3601215
80 2644280178 2643221649 Bacteria 3867359
81 2644679021 2643221724 Bacteria 3593515
82 2730228527 2728369380 Bacteria 3620317
83 2747955506 2747842429 Bacteria 3914386
84 2775658069 2775506735 Bacteria 4556596
85 2808831049 2808606357 Bacteria 4466944
86 2808852313 2808606360 Bacteria 4404006
87 2808879403 2808606366 Bacteria 4415912
88 2808891099 2808606370 Bacteria 4942454
89 2808896359 2808606371 Bacteria 4251511
90 2812321257 2811994871 Bacteria 4497550
91 2844852648 2844849076 Bacteria 4091819
92 2852648516 2852646457 Bacteria 3408613
93 2852666145 2852663356 Bacteria 4090475
94 2857724419 2857723135 Bacteria 4217853
95 2857742209 2857740372 Bacteria 4782044
96 2897563968 2897561785 Bacteria 3256946
97 2904498323 2904497146 Bacteria 4731781
98 2904777682 2904776348 Bacteria 4658726
99 2910810046 2910809715 Bacteria 4982797
100 2919035054 2919034639 Bacteria 4763403
101 2919059880 2919059106 Bacteria 4991624
102 2919540512 2919538618 Bacteria 4677069
103 2920882916 2920879853 Bacteria 4216831
104 2932428366 2932426870 Bacteria 4547726
105 2933422468 2933418574 Bacteria 4476724
106 2939601392 2939598168 Bacteria 4687164
107 2939648769 2939647034 Bacteria 4681660
108 2939675176 2939674588 Bacteria 4844420
109 2945919010 2945916053 Bacteria 4555517
110 2945920585 2945920336 Bacteria 4501603
111 2945943192 2945941187 Bacteria 4682474
112 2945959013 2945956166 Bacteria 5110334
113 2945970557 2945968032 Bacteria 4111363
114 2946027233 2946024296 Bacteria 3508095
115 2946034969 2946033335 Bacteria 3835514
116 2946039105 2946037020 Bacteria 4900426
117 2946062868 2946059875 Bacteria 4386623
118 2946082068 2946080515 Bacteria 4310960
119 2954000492 2953998280 Bacteria 4812144
120 2974302894 2974302888 Bacteria 4369871
121 8004024715 8004021418 Bacteria 4313954
122 8004028325 8004025490 Bacteria 4327753
123 8054112017 8054107350 Bacteria 5022511
124 rootL2_10150901
125 Ga0075364_10008121
126 Ga0105244_10004962
127 Ga0105244_10009167
128 Ga0105246_10000197
129 Ga0157369_10009358
130 Ga0163162_10038575
131 Ga0157375_10046328
132 Ga0209646_1000041
133 Ga0209129_1000067
134 Ga0209025_1001206
135 Ga0207691_10000490
136 Ga0207683_10010008
137 Ga0307408_100004315
138 Ga0307408_100004865
139 Ga0307408_100010922
140 Ga0307405_10009273
141 Ga0307405_10012507
142 Ga0307410_10020386
143 Ga0307406_10000131
144 Ga0307406_10000171
145 Ga0307412_10001696
146 Ga0307409_100027458
147 Ga0307416_100015648
148 Ga0439436_0004868
149 Ga0439436_0005075
150 Ga0439438_000781
151 Ga0439438_010896
152 Ga0439466_0001967
153 Ga0439465_0012961
154 Ga0439433_0000313
155 Ga0439442_000005
156 Ga0439432_001469
157 Ga0439449_0005667
158 Ga0439452_003086
159 Ga0439457_002462
160 Ga0439462_0000700
161 Ga0450920_000026
162 Ga0450907_000490
163 Ga0439434_0000599
164 Ga0439434_0000832
165 Ga0495627_001534
166 Ga0495580_0004819
167 Ga0495580_0007396
168 Ga0495639_0000345
169 Ga0495665_0001116
170 Ga0495665_0011055
171 Ga0495586_0004643
172 Ga0495645_0022897
173 Ga0495656_0000346
174 Ga0495588_0003128
175 Ga0495623_0010521
176 Ga0495670_0001080
177 Ga0495581_0002288
178 Ga0496100_0002643
179 Ga0496101_0001255
180 Ga0496102_0007210
181 Ga0496102_0055935
182 Ga0496106_0001719
183 Ga0496107_0005253
184 Ga0496107_0009833
185 Ga0496108_0029407
186 Ga0496110_0019893
187 Ga0496111_0004870
188 Ga0496112_0006126
189 Ga0496112_0008964
190 Ga0496117_0003873
191 Ga0496118_0037098
192 Ga0496125_0002143
193 Ga0496126_0000737
194 Ga0496126_0038267
195 Ga0501034_0000016
196 Ga0501037_0007493
197 Ga0501038_0043162
198 2919395597
199 2587861957
200 2643734618
201 2643783787
202 2644172743
203 2644280178
204 2644679021
205 2730228527
206 2747955506
207 2775658069
208 2808831049
209 2808852313
210 2808879403
211 2808891099
212 2808896359
213 2812321257
214 2844852648
215 2852648516
216 2852666145
217 2857724419
218 2857742209
219 2897563968
220 2904498323
221 2904777682
222 2910810046
223 2919035054
224 2919059880
225 2919540512
226 2920882916
227 2932428366
228 2933422468
229 2939601392
230 2939648769
231 2939675176
232 2945919010
233 2945920585
234 2945943192
235 2945959013
236 2945970557
237 2946027233
238 2946034969
239 2946039105
240 2946062868
241 2946082068
242 2954000492
243 2974302894
244 8004024715
245 8004028325
246 8054112017

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04408

HA2_N

Helicase associated domain (HA2), winged-helix

447

475

0.97

PF08482

HrpB_C

ATP-dependent helicase C-terminal

765

901

0.96

PF00271

Helicase_C

Helicase conserved C-terminal domain

256

386

0.9

PF00270

DEAD

DEAD/DEAH box helicase

34

194

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
3llm-assembly1.cif.gz_B crystal structure analysis of a rna helicase 0.8499 8 208
5z56-assembly1.cif.gz_x cryo-em structure of a human activated spliceosome (mature bact) at 5.1 angstrom. 0.803 9 556
2p6n-assembly1.cif.gz_A human dead-box rna helicase ddx41, helicase domain 0.7912 260 336
5z57-assembly1.cif.gz_x cryo-em structure of the human activated spliceosome (late bact) at 6.5 angstrom 0.7891 9 556
5gm6-assembly1.cif.gz_Y cryo-em structure of the activated spliceosome (bact complex) at 3.5 angstrom resolution 0.7877 16 586
ID Description Score Start End Superfamily
af_Q03319_41_271_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9321 15 210 3.40.50.300
af_A0A1D6EWN6_652_824_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9317 47 210 3.40.50.300
af_A4IB14_1_203_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9309 15 210 3.40.50.300
af_Q4D1V7_356_576_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.93 15 209 3.40.50.300
af_Q4CRA4_1_135_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9252 88 198 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A016VFG2-F1-model_v4 RNA helicase (EC 3.6.4.13) 0.9514 52 134 GO:0003723
GO:0004386
GO:0005681
GO:0006397
GO:0008380
AF-A0A6B2FZI9-F1-model_v4 RNA helicase (EC 3.6.4.13) 0.9511 76 200 GO:0003723
GO:0004386
GO:0005681
GO:0006397
GO:0008380
GO:0016787
AF-E6J7G8-F1-model_v4 deleted 0.9459 5 280
AF-T0YP11-F1-model_v4 ATP-dependent helicase hrpb 0.9401 716 837 GO:0004386
GO:0005524
GO:0016787
AF-A0A3C0BFX2-F1-model_v4 DEAD/DEAH box helicase 0.9387 47 193 GO:0003723
GO:0004386
GO:0005524
GO:0016787

Map