F102758

General Info

Members Datasets Scaffolds Average Seq Length
119 100 238 401

Family's Representative Sequence

Representative Sequence 3300044693|Ga0466961_0007452|Ga0466961_0007452_1894_3225
Length 443
Sequence MYLEISPSGGKYWRLKYRFNAREKRLALGVYPDVTLAHARRKRHEARAMLADGIDPGQAKKERKRLARLNAANTFKAVALEWFERQASTWAPSHSTKVIGRLKKDVFPRLGSRPITDITAPEVLEVLRRAESRGANDTAHRLLQTCGQIFRYAVATGRALRDVSADLRGALRPNRHTHFASVTDPAKVGEMLRAFDSFTGTPVVGAALRLAPLLFVRPGELRQAEWSQFDFGRREWRYIISKTKTEHLVPLATQAIEILRELHTLTGRLRFVFPGRDRKKPMSAAAINAALHRLGFDTKTEITGHGFRAMARTILHERLRFPAEVIEHQLAHRVPDTLGAAYNRTRFLDDRIKMMQAWADYLDCLKTGATRLAADVSHSDFAKAVHMLSRKDARRLLELIADSGLRSMPLRAFPLPDTCLPAEKNPIASANTFDIVRHPELMS

Samples

Sample ID Description Type Environment
1 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
7 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
16 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
19 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
20 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
24 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
25 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
29 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
31 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
32 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
40 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
43 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
46 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
47 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
48 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
49 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
50 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
51 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
52 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
53 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
54 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
55 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
56 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
57 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
58 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
59 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
60 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
61 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
62 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
63 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
64 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
65 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
66 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
67 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
68 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
69 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
70 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
71 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
72 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
73 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
74 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
75 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
87 2510065045 Paraburkholderia sprentiae WSM5005 Isolate Nodule
88 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
89 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
90 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
91 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
92 2718217991 Paraburkholderia sprentiae WSM5005 Isolate Nodule
93 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
94 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
95 2818991450 Burkholderia sp. 604 Isolate Unclassified
96 2857553236 Duganella sp. R-74557 Isolate Unclassified
97 2891633521 Azoarcus rhizosphaerae CC-YHH848 Isolate Rhizosphere
98 2904483920 Paraburkholderia caledonica 575 Isolate Unclassified
99 8055266321 Paraburkholderia rhynchosiae LMG 27174 Isolate Nodule
100 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.24
Metatranscriptomes 0
Isolates 11.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.76
Nodule 3.36
Rhizoplane 0.84
Rhizosphere 72.27
Stem 0
Stem Tuber 0
Unclassified 1.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466961_0007452 3300044693 Bacteria 6964
2 JGI24737J22298_10008258 3300001990 Bacteria 3491
3 JGI24737J22298_10008392 3300001990 Bacteria 3459
4 JGI25156J39149_1000104 3300002705 Bacteria 62117
5 rootH1_10087351 3300003316 Bacteria 7960
6 JGI25160J50197_1000077 3300003354 Bacteria 102220
7 Ga0055529_1001475 3300003763 Bacteria 7038
8 Ga0055541_1000125 3300003841 Bacteria 50666
9 Ga0065165_1000194 3300005262 Bacteria 106347
10 Ga0070671_100081200 3300005355 Bacteria 2711
11 Ga0070659_100006158 3300005366 Bacteria 8659
12 Ga0070667_100003926 3300005367 Bacteria 12632
13 Ga0068856_100002550 3300005614 Bacteria 18768
14 Ga0068859_100000500 3300005617 Bacteria 38692
15 Ga0068860_100006431 3300005843 Bacteria 11799
16 Ga0075362_10027979 3300006177 Bacteria 2418
17 Ga0097620_100000500 3300006931 Bacteria 38692
18 Ga0111539_10166896 3300009094 Bacteria 2573
19 Ga0105247_10002921 3300009101 Bacteria 11372
20 Ga0105237_10049760 3300009545 Bacteria 4211
21 Ga0157369_10014115 3300013105 Bacteria 9031
22 Ga0157375_10000692 3300013308 Bacteria 29822
23 Ga0163163_10178182 3300014325 Bacteria 2173
24 Ga0157379_10003840 3300014968 Bacteria 12805
25 Ga0163161_10051915 3300017792 Bacteria 2972
26 Ga0209784_100162 3300025224 Bacteria 57991
27 Ga0209784_100214 3300025224 Bacteria 39795
28 Ga0209566_100225 3300025225 Bacteria 55718
29 Ga0209674_102257 3300025226 Bacteria 4269
30 Ga0209759_1000266 3300025256 Bacteria 75339
31 Ga0209455_1000198 3300025272 Bacteria 87559
32 Ga0209455_1000532 3300025272 Bacteria 26493
33 Ga0209130_1014642 3300025284 Bacteria 1961
34 Ga0207426_1000007 3300025302 Bacteria 971011
35 Ga0207710_10000359 3300025900 Bacteria 32244
36 Ga0207644_10060615 3300025931 Bacteria 2738
37 Ga0207690_10186794 3300025932 Bacteria 1564
38 Ga0207658_10029725 3300025986 Bacteria 3862
39 Ga0207703_10004497 3300026035 Bacteria 11446
40 Ga0207702_10003876 3300026078 Bacteria 13479
41 Ga0268264_10003986 3300028381 Bacteria 12642
42 Ga0265324_10013506 3300029957 Bacteria 3044
43 Ga0307511_10000123 3300030521 Bacteria 69962
44 Ga0265332_10000604 3300031238 Bacteria 23565
45 Ga0265328_10001642 3300031239 Bacteria 10266
46 Ga0265331_10000390 3300031250 Bacteria 45388
47 Ga0265327_10000706 3300031251 Bacteria 52819
48 Ga0265327_10000859 3300031251 Bacteria 45360
49 Ga0265327_10001196 3300031251 Bacteria 35130
50 Ga0265316_10000685 3300031344 Bacteria 37613
51 Ga0307508_10184598 3300031616 Bacteria 1688
52 Ga0395905_0015241 3300037471 Bacteria 7309
53 Ga0237816_00272 3300039145 Bacteria 4365
54 Ga0466961_0000284 3300044693 Bacteria 33521
55 Ga0466961_0004015 3300044693 Bacteria 9214
56 Ga0466970_0001785 3300044765 Bacteria 10363
57 Ga0466957_0079690 3300044842 Bacteria 2038
58 Ga0451576_0005152 3300045051 Bacteria 16554
59 Ga0466958_0000151 3300045836 Bacteria 24288
60 Ga0495629_0000034 3300046459 Bacteria 118709
61 Ga0495638_0004956 3300046460 Bacteria 9997
62 Ga0495653_0000958 3300046463 Bacteria 22159
63 Ga0495653_0002022 3300046463 Bacteria 15964
64 Ga0495584_0001212 3300046491 Bacteria 15786
65 Ga0495583_0001396 3300046506 Bacteria 24685
66 Ga0495630_0002819 3300046517 Bacteria 12049
67 Ga0495648_0004697 3300046524 Bacteria 11583
68 Ga0495663_0003650 3300046525 Bacteria 4411
69 Ga0495656_0003785 3300046615 Bacteria 5141
70 Ga0495661_0001742 3300046665 Bacteria 17520
71 Ga0495599_0042174 3300046678 Bacteria 2863
72 Ga0495623_0024643 3300046679 Bacteria 3874
73 Ga0495624_0000373 3300046690 Bacteria 35676
74 Ga0495604_0014785 3300047317 Bacteria 6223
75 Ga0495674_0005625 3300047319 Bacteria 12006
76 Ga0495674_0034522 3300047319 Bacteria 4573
77 Ga0495674_0078363 3300047319 Bacteria 2839
78 Ga0495674_0215952 3300047319 Bacteria 1587
79 Ga0495676_0074718 3300047321 Bacteria 2594
80 Ga0495683_0001608 3300047323 Bacteria 14520
81 Ga0495602_0138906 3300048088 Bacteria 1926
82 Ga0496114_0002564 3300048917 Bacteria 13881
83 Ga0496126_0000484 3300048929 Bacteria 78854
84 Ga0495678_002777 3300049459 Bacteria 11439
85 Ga0495682_0000646 3300049460 Bacteria 23284
86 Ga0501032_0013735 3300049569 Bacteria 5747
87 Ga0501033_0028505 3300049570 Bacteria 4194
88 Ga0501034_0312462 3300049571 Bacteria 1506
89 Ga0501037_0010870 3300049573 Bacteria 6688
90 Ga0501037_0011111 3300049573 Bacteria 6625
91 Ga0501037_0188262 3300049573 Unclassified 1462
92 Ga0501038_0007110 3300049574 Bacteria 10337
93 Ga0501038_0072834 3300049574 Bacteria 2910
94 Ga0501039_0182497 3300049575 Bacteria 1650
95 Ga0501042_0164995 3300049578 Unclassified 1598
96 Ga0501043_0008302 3300049579 Bacteria 8177
97 Ga0501043_0012178 3300049579 Bacteria 6721
98 Ga0501043_0055840 3300049579 Bacteria 3102
99 Ga0501047_0007845 3300049581 Bacteria 10056
100 Ga0501035_0019087 3300049822 Bacteria 6311
101 Ga0501044_0007115 3300049823 Bacteria 12304
102 Ga0501044_0007464 3300049823 Bacteria 12024
103 Ga0501044_0012709 3300049823 Bacteria 9119
104 Ga0501044_0036421 3300049823 Bacteria 5148
105 nmdc:mga03683_13230_c2 3300050489 Bacteria 2730
106 2510253018 2510065045 Bacteria 7761063
107 2526212723 2526164512 Bacteria 4025691
108 2563055294 2562617112 Bacteria 10918404
109 2643908500 2643221579 Bacteria 4443405
110 2713479064 2711768613 Bacteria 11048459
111 2719638818 2718217991 Bacteria 7829542
112 2738716464 2738541276 Bacteria 4690596
113 2792840703 2791355137 Bacteria 9654227
114 2819624020 2818991450 Bacteria 6962147
115 2857557073 2857553236 Bacteria 6166726
116 2891634062 2891633521 Bacteria 4602265
117 2904488348 2904483920 Bacteria 7545285
118 8055268000 8055266321 Bacteria 7999742
119 8055304271 8055301274 Bacteria 8587385
120 Ga0466961_0007452
121 JGI24737J22298_10008258
122 JGI24737J22298_10008392
123 JGI25156J39149_1000104
124 rootH1_10087351
125 JGI25160J50197_1000077
126 Ga0055529_1001475
127 Ga0055541_1000125
128 Ga0065165_1000194
129 Ga0070671_100081200
130 Ga0070659_100006158
131 Ga0070667_100003926
132 Ga0068856_100002550
133 Ga0068859_100000500
134 Ga0068860_100006431
135 Ga0075362_10027979
136 Ga0097620_100000500
137 Ga0111539_10166896
138 Ga0105247_10002921
139 Ga0105237_10049760
140 Ga0157369_10014115
141 Ga0157375_10000692
142 Ga0163163_10178182
143 Ga0157379_10003840
144 Ga0163161_10051915
145 Ga0209784_100162
146 Ga0209784_100214
147 Ga0209566_100225
148 Ga0209674_102257
149 Ga0209759_1000266
150 Ga0209455_1000198
151 Ga0209455_1000532
152 Ga0209130_1014642
153 Ga0207426_1000007
154 Ga0207710_10000359
155 Ga0207644_10060615
156 Ga0207690_10186794
157 Ga0207658_10029725
158 Ga0207703_10004497
159 Ga0207702_10003876
160 Ga0268264_10003986
161 Ga0265324_10013506
162 Ga0307511_10000123
163 Ga0265332_10000604
164 Ga0265328_10001642
165 Ga0265331_10000390
166 Ga0265327_10000706
167 Ga0265327_10000859
168 Ga0265327_10001196
169 Ga0265316_10000685
170 Ga0307508_10184598
171 Ga0395905_0015241
172 Ga0237816_00272
173 Ga0466961_0000284
174 Ga0466961_0004015
175 Ga0466970_0001785
176 Ga0466957_0079690
177 Ga0451576_0005152
178 Ga0466958_0000151
179 Ga0495629_0000034
180 Ga0495638_0004956
181 Ga0495653_0000958
182 Ga0495653_0002022
183 Ga0495584_0001212
184 Ga0495583_0001396
185 Ga0495630_0002819
186 Ga0495648_0004697
187 Ga0495663_0003650
188 Ga0495656_0003785
189 Ga0495661_0001742
190 Ga0495599_0042174
191 Ga0495623_0024643
192 Ga0495624_0000373
193 Ga0495604_0014785
194 Ga0495674_0005625
195 Ga0495674_0034522
196 Ga0495674_0078363
197 Ga0495674_0215952
198 Ga0495676_0074718
199 Ga0495683_0001608
200 Ga0495602_0138906
201 Ga0496114_0002564
202 Ga0496126_0000484
203 Ga0495678_002777
204 Ga0495682_0000646
205 Ga0501032_0013735
206 Ga0501033_0028505
207 Ga0501034_0312462
208 Ga0501037_0010870
209 Ga0501037_0011111
210 Ga0501037_0188262
211 Ga0501038_0007110
212 Ga0501038_0072834
213 Ga0501039_0182497
214 Ga0501042_0164995
215 Ga0501043_0008302
216 Ga0501043_0012178
217 Ga0501043_0055840
218 Ga0501047_0007845
219 Ga0501035_0019087
220 Ga0501044_0007115
221 Ga0501044_0007464
222 Ga0501044_0012709
223 Ga0501044_0036421
224 nmdc:mga03683_13230_c2
225 2510253018
226 2526212723
227 2563055294
228 2643908500
229 2713479064
230 2719638818
231 2738716464
232 2792840703
233 2819624020
234 2857557073
235 2891634062
236 2904488348
237 8055268000
238 8055304271

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22022

Phage_int_M

Phage integrase central domain

75

170

0.99

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

1

63

0.96

PF00589

Phage_integrase

Phage integrase family

182

348

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ju0-assembly1.cif.gz_A structure of the arm-type binding domain of hai7 integrase 0.99 3 83
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.974 3 76
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9672 3 76
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9252 3 76
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9175 3 76
ID Description Score Start End Superfamily
af_P39347_1_63_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9983 28 87 3.30.160.390
3ju0A00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.99 3 83 3.30.160.390
af_P32053_7_95_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9844 2 87 3.30.160.390
af_P37326_1_84_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.981 3 84 3.30.160.390
af_P76542_102_208_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9737 97 200 1.10.150.130
ID Description Score Start End GO Terms
AF-A0A855SN59-F1-model_v4 deleted 1.005 1 82
AF-A0A2X3D8R9-F1-model_v4 Phage integrase family protein 1.004 1 72 GO:0015074
AF-A0A521PZA9-F1-model_v4 DUF4102 domain-containing protein 1.004 3 69 GO:0015074
AF-A0A2N2SR13-F1-model_v4 Integrase 1.004 1 65 GO:0015074
AF-A0A7H4NRX7-F1-model_v4 deleted 1.002 1 74

Map