F085959

General Info

Members Datasets Scaffolds Average Seq Length
115 100 17 522

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2856342000|2856342900
Length 488
Sequence TVFDPILSGVDQTRMHGYAVYDTLFAVDSKGVPQPQMVEKWGVSDDKKTYTFQLREGLTFHDGSPVIAADCVASIRRWGQVDAGGKLIMARAKDISKADDRTFTISLKEPLGTLINILVEGLYLAVMREKDASRPATEQVTSNIGSGPFKFNEALAKPGASFTYDRNAQYVPRQEPPDGFAGGKVVKVDRAVWQVIPDQQTAFAALQAGEVDFVWMPPADLFPLIESDPNLELQVLCKGGTIMYLRMNFLQPPFDNVKARQAMLHLVDQEAFMRVAYPDPRFSQTVTSIFGNNPLYSNDENTGWYKKGGDPERAKQLFQEAGYSGEKIVILQPTDWPESSNASQLLADMLRKIGVNAELAPSDWGGVEKRRKSKGPVEDGGWNILISDYSGYNPINTPFLLANGEDAFYGWPKNDEYEALRAKWIEVDTLEEQQALAREMQGLWWDFVGGVLLGHSLQPTARRKSLSGLLEVPGSYGFPMWNMQKVSA

Samples

Sample ID Description Type Environment
1 2510065059 Mesorhizobium ciceri WSM4083 Isolate Nodule
2 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
3 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
4 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
5 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
6 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
7 2693429784 Mesorhizobium sp. LCM 4576 Isolate Rhizosphere
8 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
9 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
10 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
11 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
12 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
13 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
14 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
15 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
16 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
17 2856314179 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Isolate Nodule
18 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule
19 2869234852 Mesorhizobium sp. M7A.T.Ca.US.000.02.2.1 Isolate Nodule
20 2869242130 Mesorhizobium sp. M7A.F.Ca.CA.004.11.2.1 Isolate Nodule
21 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
22 2871474448 Mesorhizobium sp. M6A.T.Cr.TU.017.01.1.1 Isolate Nodule
23 2871481445 Mesorhizobium sp. M7A.F.Ca.CA.004.02.1.1 Isolate Nodule
24 2874109183 Mesorhizobium sp. M7A.T.Ca.TU.009.02.1.1 Isolate Nodule
25 2874116593 Mesorhizobium sp. M7A.F.Ca.CA.004.08.2.1 Isolate Nodule
26 2874139085 Mesorhizobium sp. M8A.F.Ca.ET.207.01.1.1 Isolate Nodule
27 2874645413 Bradyrhizobium canariense UBMA122 Isolate Nodule
28 2876386047 Mesorhizobium sp. M7A.F.Ca.CA.004.07.1.1 Isolate Nodule
29 2876420981 Mesorhizobium sp. M7A.F.Ca.CA.004.08.1.1 Isolate Nodule
30 2878730984 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.1 Isolate Nodule
31 2881861095 Mesorhizobium sp. M4B.F.Ca.ET.049.02.1.2 Isolate Nodule
32 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
33 2885326080 Mesorhizobium sp. M1E.F.Ca.ET.041.01.1.1 Isolate Nodule
34 2885334103 Mesorhizobium sp. M1E.F.Ca.ET.063.01.1.1 Isolate Nodule
35 2889010040 Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 Isolate Nodule
36 2903448605 Mesorhizobium japonicum Opo-235 Isolate Nodule
37 2903513507 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.2 Isolate Nodule
38 2904666416 Bradyrhizobium nanningense CCBAU 51757 Isolate Unclassified
39 2906401398 Mesorhizobium sp. M7A.F.Ca.CA.004.10.1.1 Isolate Nodule
40 2906414383 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Isolate Nodule
41 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
42 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
43 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
44 2922185730 Mesorhizobium sp. M2A.F.Ca.ET.037.01.1.1 Isolate Nodule
45 2924718760 Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 Isolate Nodule
46 2924754689 Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1 Isolate Nodule
47 2935608549 Bradyrhizobium sp. RT6a Isolate Nodule
48 2935648319 Bradyrhizobium sp. JR4.3 Isolate Nodule
49 2935656913 Bradyrhizobium sp. JR5.3 Isolate Nodule
50 2935864058 Bradyrhizobium sp. RT9a Isolate Nodule
51 2936011229 Bradyrhizobium sp. JR1.1 Isolate Nodule
52 2936019824 Bradyrhizobium sp. JR1.5 Isolate Nodule
53 2936028420 Bradyrhizobium sp. JR1.7 Isolate Nodule
54 2936046547 Bradyrhizobium sp. JR3.12 Isolate Nodule
55 2937836603 Mesorhizobium sp. M6A.T.Cr.TU.014.01.1.1 Isolate Nodule
56 2937861824 Mesorhizobium sp. M7A.F.Ca.CA.001.07.2.1 Isolate Nodule
57 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
58 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
59 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
60 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
61 2958108152 Mesorhizobium sp. M7A.F.Ca.CA.004.11.1.1 Isolate Nodule
62 2961183825 Mesorhizobium sp. M7A.F.Ca.CA.001.12.1.1 Isolate Nodule
63 2965062239 Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 Isolate Nodule
64 2968083720 Mesorhizobium erdmanii Opo-242 Isolate Unclassified
65 2970532167 Mesorhizobium sp. M7A.F.Ca.CA.002.05.1.1 Isolate Nodule
66 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
67 2970619444 Mesorhizobium sp. M7A.F.Ca.ET.027.02.1.1 Isolate Nodule
68 2970627176 Mesorhizobium sp. M7A.F.Ca.US.006.01.2.1 Isolate Nodule
69 2977851361 Mesorhizobium sp. M7A.F.Ca.CA.004.06.2.1 Isolate Nodule
70 2977864932 Mesorhizobium tamadayense DSM 28320 Isolate Nodule
71 2977907340 Mesorhizobium sp. M7A.F.Ca.CA.004.12.1.1 Isolate Nodule
72 2979764755 Mesorhizobium sp. M7A.F.Ca.CA.004.05.2.1 Isolate Nodule
73 2979772303 Mesorhizobium sp. M7A.F.Ca.CA.004.04.1.1 Isolate Nodule
74 3004232784 Mesorhizobium sp. M7A.T.Ca.US.000.02.1.1 Isolate Nodule
75 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
76 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
77 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
78 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
79 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
80 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
81 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
82 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
83 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
84 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
85 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule
88 8004395343 Mesorhizobium sp. M5C.F.Ca.IN.020.14.1.1 Isolate Nodule
89 8004633249 Mesorhizobium sp. M6A.T.Ce.TU.002.03.1.1 Isolate Nodule
90 8004727605 Mesorhizobium sp. M7A.F.Ca.CA.004.01.1.1 Isolate Nodule
91 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
92 8016522445 Bradyrhizobium sp. LM6.9 Isolate Nodule
93 8016530956 Bradyrhizobium sp. LM6.11 Isolate Nodule
94 8016539877 Bradyrhizobium sp. LM6.10 Isolate Nodule
95 8016548790 Bradyrhizobium sp. LM3.6 Isolate Nodule
96 8016557553 Bradyrhizobium sp. LM3.4 Isolate Nodule
97 8016566248 Bradyrhizobium sp. LM3.2 Isolate Nodule
98 8016575299 Bradyrhizobium sp. LM2.9 Isolate Nodule
99 8016595262 Bradyrhizobium sp. LM2.3 Isolate Nodule
100 8019530166 Bradyrhizobium sp. LM4.3 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 14.78
Metatranscriptomes 0
Isolates 85.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 86.09
Rhizoplane 0
Rhizosphere 0.87
Stem 0
Stem Tuber 0
Unclassified 13.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0099823_1012154 3300006944 Bacteria 8723
2 Ga0079104_1011631 3300006946 Bacteria 2817
3 Ga0214543_1025161 3300021327 Bacteria 3498
4 Ga0213875_10004134 3300021388 Bacteria 8042
5 Ga0213875_10008195 3300021388 Bacteria 5363
6 Ga0228711_1007602 3300022739 Bacteria 15620
7 Ga0228710_1009529 3300022740 Bacteria 13415
8 Ga0209281_1001746 3300027111 Bacteria 11135
9 Ga0209389_1000109 3300027296 Bacteria 73021
10 Ga0209389_1000179 3300027296 Bacteria 49349
11 Ga0209489_100456 3300027361 Bacteria 76090
12 Ga0209489_101410 3300027361 Bacteria 49349
13 Ga0436364_0588488 3300037853 Bacteria 48316
14 Ga0436364_1158774 3300037853 Bacteria 4318
15 Ga0436364_1191285 3300037853 Bacteria 14362
16 Ga0451855_1926909 3300041511 Bacteria 2030
17 Ga0496126_0000152 3300048929 Bacteria 161615

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2922185730 2922186664 472
2 iso_pu_bacteria 2856342000 2856342900 485
3 iso_pu_bacteria 2970532167 2970534879 488
4 iso_pu_bacteria 8004312739 8004315965 488
5 iso_pu_bacteria 2515154107 2515613273 490
6 iso_pu_bacteria 2869242130 2869249259 490
7 iso_pu_bacteria 2871481445 2871487382 490
8 iso_pu_bacteria 2874116593 2874119261 490
9 iso_pu_bacteria 2876386047 2876389999 490
10 iso_pu_bacteria 2876420981 2876422355 490
11 iso_pu_bacteria 2906401398 2906405759 490
12 iso_pu_bacteria 2937861824 2937864368 490
13 iso_pu_bacteria 2958108152 2958111419 490
14 iso_pu_bacteria 2961183825 2961186374 490
15 iso_pu_bacteria 2970627176 2970629559 490
16 iso_pu_bacteria 2977851361 2977853642 490
17 iso_pu_bacteria 2977907340 2977910081 490
18 iso_pu_bacteria 2979764755 2979772272 490
19 iso_pu_bacteria 2979772303 2979773946 490
20 iso_pu_bacteria 8004727605 8004729320 490
21 iso_pu_bacteria 2885334103 2885335768 491
22 iso_pu_bacteria 8004395343 8004401479 491
23 iso_pu_bacteria 8016595262 8016595408 491
24 iso_pu_bacteria 2874645413 2874646105 492
25 iso_pu_bacteria 2882456835 2882463589 492
26 iso_pu_bacteria 2924754689 2924761238 492
27 3300041511 Ga0451855_1926909 Ga0451855_1926909_427_1923 496
28 iso_pu_bacteria 2802429605 2805932168 510
29 iso_pu_bacteria 2889010040 2889015602 520
30 iso_pu_bacteria 2871474448 2871474606 525
31 iso_pu_bacteria 2935648319 2935656454 526
32 iso_pu_bacteria 2935656913 2935665283 526
33 iso_pu_bacteria 2936011229 2936019357 526
34 iso_pu_bacteria 2936019824 2936027939 526
35 iso_pu_bacteria 2936028420 2936036722 526
36 iso_pu_bacteria 2936046547 2936054785 526
37 iso_pu_bacteria 2791355091 2792624899 528
38 iso_pu_bacteria 2791355092 2792630906 528
39 iso_pu_bacteria 2924754689 2924755608 528
40 iso_pu_bacteria 2935864058 2935873619 528
41 iso_pu_bacteria 2965062239 2965064946 528
42 iso_pu_bacteria 8006984368 8006991442 528
43 iso_pu_bacteria 2510065059 2510320288 529
44 iso_pu_bacteria 2513237146 2513930007 529
45 iso_pu_bacteria 2513237159 2514000716 529
46 iso_pu_bacteria 2599185170 2599414277 529
47 iso_pu_bacteria 2838035591 2838042483 529
48 iso_pu_bacteria 2838661181 2838666653 529
49 iso_pu_bacteria 2840764183 2840765462 529
50 iso_pu_bacteria 2842521101 2842526615 529
51 iso_pu_bacteria 2850079185 2850079256 529
52 iso_pu_bacteria 2856314179 2856316806 529
53 iso_pu_bacteria 2869234852 2869238991 529
54 iso_pu_bacteria 2869278585 2869282337 529
55 iso_pu_bacteria 2874109183 2874112136 529
56 iso_pu_bacteria 2874139085 2874141595 529
57 iso_pu_bacteria 2878730984 2878733648 529
58 iso_pu_bacteria 2881861095 2881865773 529
59 iso_pu_bacteria 2903513507 2903516512 529
60 iso_pu_bacteria 2906414383 2906415583 529
61 iso_pu_bacteria 2913295892 2913301486 529
62 iso_pu_bacteria 2924718760 2924719457 529
63 iso_pu_bacteria 2957450854 2957451346 529
64 iso_pu_bacteria 2957498199 2957499713 529
65 iso_pu_bacteria 2958034702 2958038229 529
66 iso_pu_bacteria 2958041894 2958049975 529
67 iso_pu_bacteria 2965062239 2965065616 529
68 iso_pu_bacteria 2970593180 2970596948 529
69 iso_pu_bacteria 2970619444 2970622696 529
70 iso_pu_bacteria 3004232784 3004236139 529
71 iso_pu_bacteria 2513237138 2513870710 530
72 iso_pu_bacteria 2693429784 2694636703 530
73 iso_pu_bacteria 2885326080 2885330352 530
74 iso_pu_bacteria 2885334103 2885335766 530
75 iso_pu_bacteria 2903448605 2903448760 530
76 iso_pu_bacteria 2921237296 2921238854 530
77 iso_pu_bacteria 2935608549 2935616489 530
78 iso_pu_bacteria 2935864058 2935873528 530
79 iso_pu_bacteria 2937836603 2937841525 530
80 iso_pu_bacteria 2968083720 2968086263 530
81 iso_pu_bacteria 2977864932 2977871938 530
82 iso_pu_bacteria 8016522445 8016522609 530
83 iso_pu_bacteria 8016530956 8016531028 530
84 iso_pu_bacteria 8016539877 8016544404 530
85 iso_pu_bacteria 8016548790 8016548999 530
86 iso_pu_bacteria 8016557553 8016565907 530
87 iso_pu_bacteria 8016566248 8016575000 530
88 iso_pu_bacteria 8016595262 8016595419 530
89 iso_pu_bacteria 8019530166 8019530226 530
90 3300006946 Ga0079104_1011631 Ga0079104_10116312 531
91 3300027111 Ga0209281_1001746 Ga0209281_10017461 531
92 iso_pu_bacteria 2751185821 2753459188 531
93 iso_pu_bacteria 2802429605 2805931815 531
94 iso_pu_bacteria 2920760137 2920762373 531
95 iso_pu_bacteria 2924754689 2924762780 531
96 iso_pu_bacteria 8004633249 8004639967 531
97 3300021327 Ga0214543_1025161 Ga0214543_10251613 532
98 3300021388 Ga0213875_10004134 Ga0213875_100041343 532
99 3300021388 Ga0213875_10008195 Ga0213875_100081954 532
100 3300037853 Ga0436364_0588488 Ga0436364_0588488_10102_11703 532
101 3300037853 Ga0436364_1191285 Ga0436364_1191285_2498_4105 532
102 iso_pu_bacteria 8016522445 8016522598 532
103 iso_pu_bacteria 8016548790 8016548987 532
104 iso_pu_bacteria 8016557553 8016566236 532
105 iso_pu_bacteria 8016575299 8016575406 532
106 3300022739 Ga0228711_1007602 Ga0228711_100760211 533
107 3300022740 Ga0228710_1009529 Ga0228710_10095294 533
108 3300037853 Ga0436364_1158774 Ga0436364_1158774_1864_3468 533
109 3300048929 Ga0496126_0000152 Ga0496126_0000152_10306_11910 533
110 iso_pu_bacteria 2904666416 2904667145 533
111 3300006944 Ga0099823_1012154 Ga0099823_101215410 534
112 3300027296 Ga0209389_1000109 Ga0209389_100010930 534
113 3300027296 Ga0209389_1000179 Ga0209389_100017970 534
114 3300027361 Ga0209489_100456 Ga0209489_10045633 534
115 3300027361 Ga0209489_101410 Ga0209489_10141070 534

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00496

SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

32

407

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1f4p-assembly1.cif.gz_A y98w flavodoxin mutant 1.5a (d. vulgaris) 0.8746 372 407
6hlx-assembly1.cif.gz_A structure of the pbp agaa in complex with agropinic acid from a.tumefacien r10 0.8718 35 534
4heq-assembly1.cif.gz_B the crystal structure of flavodoxin from desulfovibrio gigas 0.8617 372 407
7kz9-assembly2.cif.gz_B crystal structure of pseudomonas sp. pdc86 substrate-binding protein aapf in complex with a signaling molecule heheaa 0.859 32 533
6hlx-assembly1.cif.gz_A structure of the pbp agaa in complex with agropinic acid from a.tumefacien r10 0.8584 35 534
ID Description Score Start End Superfamily
4qflB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9054 193 280 3.40.190.10
af_O94613_1_159_3.40.50.360 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.8869 373 407 3.40.50.360
4oeuB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8865 190 283 3.40.190.10
6i3gA03 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.8749 288 502 3.10.105.10
3f6sB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.8705 372 407 3.40.50.360
ID Description Score Start End GO Terms
AF-A0A2S6MHN2-F1-model_v4 ABC transporter substrate-binding protein 0.9669 51 534 GO:0015833
GO:0030288
GO:0043190
GO:1904680
AF-A0A2S6MHN2-F1-model_v4 ABC transporter substrate-binding protein 0.9649 51 534 GO:0015833
GO:0030288
GO:0043190
GO:1904680
AF-A0A536UXJ9-F1-model_v4 ABC transporter substrate-binding protein 0.9638 222 534 GO:0015833
GO:1904680
AF-A0A849N3U2-F1-model_v4 ABC transporter substrate-binding protein 0.9581 39 534 GO:0015833
GO:1904680
AF-A0A849N3U2-F1-model_v4 ABC transporter substrate-binding protein 0.9562 39 534 GO:0015833
GO:1904680

Feature Viewer

pLDDT pTM Quality
88.83 0.87 High
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Predicted Structure (AlphaFold2)

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