F077700

General Info

Members Datasets Scaffolds Average Seq Length
114 37 228 350

Family's Representative Sequence

Representative Sequence 3300005471|Ga0070698_100074202|Ga0070698_1000742023
Length 387
Sequence VETTLRKTFKYKLKPTXXXXQAMAFVLRRCRELYNAALQERRDAWQKCGVSVTLAGQSAQLPAVKEVRPEYGDIHSQVVQDVLTRLDRAFQAFFRRVKNGGTPGYPRFQGTNRYNSFTYKQFGNGATLDNGFLVLSKIGRIALRWSRPLQGMPKTVTVSREADGWYVCFSCAGVPVKPLPATGQETGLDLGIEAFATLADGQRIFHPGWYRQAECKLKTAQRRVSRVTLLAKAHLKVRRQRADFHHKTALKLIQQHDTIYHEDLQTANMVKNHHLAKSISDAGWAVFLTILSFKAACAGRRVVAVPPAYTSQICSGCGVMVAKGLSVRWHSCPDCATSLHRDHNAARNIERLGQSLRGGAALAASENRESPGLSRGSVNRTAASGPN

Samples

Sample ID Description Type Environment
1 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
4 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
7 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
15 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
20 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
29 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
30 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
31 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
32 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
33 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
34 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
35 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
36 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
37 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.14
Rhizosphere 93.86
Stem 0
Stem Tuber 0
Unclassified 13.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070698_100074202 3300005471 Unclassified 3407
2 Ga0070683_100010544 3300005329 Bacteria 7945
3 Ga0070683_100019505 3300005329 Bacteria 6024
4 Ga0070713_100002020 3300005436 Bacteria 13102
5 Ga0070708_100083487 3300005445 Bacteria 2896
6 Ga0070708_100169863 3300005445 Unclassified 2035
7 Ga0070708_100321545 3300005445 Bacteria 1457
8 Ga0070706_100000273 3300005467 Bacteria 62730
9 Ga0070706_100000365 3300005467 Bacteria 54483
10 Ga0070706_100000518 3300005467 Bacteria 45110
11 Ga0070706_100001484 3300005467 Bacteria 24618
12 Ga0070706_100002164 3300005467 Bacteria 19999
13 Ga0070706_100002232 3300005467 Bacteria 19691
14 Ga0070706_100002379 3300005467 Bacteria 18997
15 Ga0070706_100002887 3300005467 Bacteria 17123
16 Ga0070706_100020300 3300005467 Bacteria 6123
17 Ga0070706_100025775 3300005467 Bacteria 5411
18 Ga0070706_100035229 3300005467 Bacteria 4622
19 Ga0070706_100047319 3300005467 Bacteria 3969
20 Ga0070707_100003513 3300005468 Bacteria 14790
21 Ga0070707_100012891 3300005468 Bacteria 7808
22 Ga0070707_100019133 3300005468 Bacteria 6449
23 Ga0070707_100023891 3300005468 Bacteria 5782
24 Ga0070707_100037629 3300005468 Bacteria 4619
25 Ga0070707_100044431 3300005468 Bacteria 4254
26 Ga0070707_100104949 3300005468 Bacteria 2740
27 Ga0070707_100108263 3300005468 Bacteria 2696
28 Ga0070707_100125816 3300005468 Unclassified 2490
29 Ga0070707_100126348 3300005468 Bacteria 2485
30 Ga0070707_100152043 3300005468 Bacteria 2254
31 Ga0070707_100198875 3300005468 Bacteria 1953
32 Ga0070707_100200764 3300005468 Bacteria 1944
33 Ga0070707_100236161 3300005468 Bacteria 1779
34 Ga0070698_100007724 3300005471 Bacteria 11632
35 Ga0070698_100022171 3300005471 Bacteria 6649
36 Ga0070698_100074398 3300005471 Bacteria 3402
37 Ga0070698_100131666 3300005471 Unclassified 2456
38 Ga0070698_100132510 3300005471 Unclassified 2447
39 Ga0070699_100039158 3300005518 Bacteria 4104
40 Ga0070679_100180304 3300005530 Bacteria 2084
41 Ga0070684_100003707 3300005535 Bacteria 11523
42 Ga0070684_100011848 3300005535 Bacteria 6962
43 Ga0070684_100158034 3300005535 Bacteria 2056
44 Ga0068857_100001396 3300005577 Bacteria 19059
45 Ga0068857_100001473 3300005577 Bacteria 18732
46 Ga0068856_100002228 3300005614 Bacteria 20024
47 Ga0068856_100034200 3300005614 Bacteria 4978
48 Ga0068864_100372988 3300005618 Unclassified 1351
49 Ga0075428_100133176 3300006844 Bacteria 2703
50 Ga0075428_100324359 3300006844 Unclassified 1654
51 Ga0114129_10289688 3300009147 Bacteria 2185
52 Ga0114129_10333407 3300009147 Bacteria 2014
53 Ga0114129_10348324 3300009147 Unclassified 1963
54 Ga0105237_10051397 3300009545 Bacteria 4140
55 Ga0157369_10008158 3300013105 Bacteria 12014
56 Ga0157369_10106676 3300013105 Bacteria 2981
57 Ga0157372_10121548 3300013307 Bacteria 3000
58 Ga0157372_10283657 3300013307 Bacteria 1926
59 Ga0163163_10117133 3300014325 Bacteria 2696
60 Ga0163163_10127787 3300014325 Unclassified 2580
61 Ga0163163_10133434 3300014325 Bacteria 2523
62 Ga0163163_10222152 3300014325 Bacteria 1938
63 Ga0157379_10313083 3300014968 Unclassified 1432
64 Ga0207684_10000176 3300025910 Bacteria 104968
65 Ga0207684_10000429 3300025910 Bacteria 55793
66 Ga0207684_10000523 3300025910 Bacteria 47487
67 Ga0207684_10000572 3300025910 Bacteria 44774
68 Ga0207684_10000933 3300025910 Bacteria 33020
69 Ga0207684_10000969 3300025910 Bacteria 32131
70 Ga0207684_10001021 3300025910 Bacteria 31403
71 Ga0207684_10002072 3300025910 Bacteria 20631
72 Ga0207684_10002096 3300025910 Bacteria 20442
73 Ga0207684_10005504 3300025910 Bacteria 11666
74 Ga0207684_10012008 3300025910 Bacteria 7543
75 Ga0207684_10017488 3300025910 Bacteria 6151
76 Ga0207684_10027054 3300025910 Bacteria 4891
77 Ga0207684_10029254 3300025910 Bacteria 4693
78 Ga0207671_10062928 3300025914 Bacteria 2756
79 Ga0207671_10124845 3300025914 Bacteria 1970
80 Ga0207646_10005901 3300025922 Bacteria 12782
81 Ga0207646_10010632 3300025922 Bacteria 8962
82 Ga0207646_10014781 3300025922 Bacteria 7396
83 Ga0207646_10022092 3300025922 Bacteria 5868
84 Ga0207646_10030530 3300025922 Bacteria 4884
85 Ga0207646_10033417 3300025922 Bacteria 4654
86 Ga0207646_10035931 3300025922 Unclassified 4473
87 Ga0207646_10045794 3300025922 Bacteria 3925
88 Ga0207646_10060335 3300025922 Bacteria 3387
89 Ga0207646_10105056 3300025922 Bacteria 2532
90 Ga0207646_10109796 3300025922 Bacteria 2475
91 Ga0207646_10119607 3300025922 Bacteria 2366
92 Ga0207646_10127772 3300025922 Bacteria 2286
93 Ga0207646_10242994 3300025922 Bacteria 1626
94 Ga0207700_10002918 3300025928 Bacteria 9857
95 Ga0207661_10000900 3300025944 Bacteria 19476
96 Ga0207661_10002799 3300025944 Bacteria 12035
97 Ga0207702_10022149 3300026078 Bacteria 5266
98 Ga0207676_10380275 3300026095 Bacteria 1314
99 Ga0207674_10000041 3300026116 Bacteria 129439
100 Ga0207674_10043396 3300026116 Bacteria 4636
101 Ga0373953_0005790 3300035117 Unclassified 4037
102 Ga0373961_0020119 3300035241 Bacteria 1761
103 Ga0373935_0302872 3300035692 Bacteria 1130
104 Ga0373947_0052326 3300035725 Bacteria 2460
105 Ga0495629_0205241 3300046459 Bacteria 1362
106 Ga0495658_0125360 3300046683 Bacteria 1558
107 Ga0496109_0472723 3300048912 Unclassified 1184
108 Ga0496110_0388087 3300048913 Bacteria 1273
109 Ga0496112_0005267 3300048915 Bacteria 11148
110 Ga0496112_0090174 3300048915 Unclassified 3035
111 Ga0496112_0092625 3300048915 Unclassified 2992
112 Ga0496112_0266256 3300048915 Bacteria 1663
113 Ga0496112_0308124 3300048915 Bacteria 1529
114 nmdc:mga05p37_251775_c1 3300050507 Bacteria 2118
115 Ga0070698_100074202
116 Ga0070683_100010544
117 Ga0070683_100019505
118 Ga0070713_100002020
119 Ga0070708_100083487
120 Ga0070708_100169863
121 Ga0070708_100321545
122 Ga0070706_100000273
123 Ga0070706_100000365
124 Ga0070706_100000518
125 Ga0070706_100001484
126 Ga0070706_100002164
127 Ga0070706_100002232
128 Ga0070706_100002379
129 Ga0070706_100002887
130 Ga0070706_100020300
131 Ga0070706_100025775
132 Ga0070706_100035229
133 Ga0070706_100047319
134 Ga0070707_100003513
135 Ga0070707_100012891
136 Ga0070707_100019133
137 Ga0070707_100023891
138 Ga0070707_100037629
139 Ga0070707_100044431
140 Ga0070707_100104949
141 Ga0070707_100108263
142 Ga0070707_100125816
143 Ga0070707_100126348
144 Ga0070707_100152043
145 Ga0070707_100198875
146 Ga0070707_100200764
147 Ga0070707_100236161
148 Ga0070698_100007724
149 Ga0070698_100022171
150 Ga0070698_100074398
151 Ga0070698_100131666
152 Ga0070698_100132510
153 Ga0070699_100039158
154 Ga0070679_100180304
155 Ga0070684_100003707
156 Ga0070684_100011848
157 Ga0070684_100158034
158 Ga0068857_100001396
159 Ga0068857_100001473
160 Ga0068856_100002228
161 Ga0068856_100034200
162 Ga0068864_100372988
163 Ga0075428_100133176
164 Ga0075428_100324359
165 Ga0114129_10289688
166 Ga0114129_10333407
167 Ga0114129_10348324
168 Ga0105237_10051397
169 Ga0157369_10008158
170 Ga0157369_10106676
171 Ga0157372_10121548
172 Ga0157372_10283657
173 Ga0163163_10117133
174 Ga0163163_10127787
175 Ga0163163_10133434
176 Ga0163163_10222152
177 Ga0157379_10313083
178 Ga0207684_10000176
179 Ga0207684_10000429
180 Ga0207684_10000523
181 Ga0207684_10000572
182 Ga0207684_10000933
183 Ga0207684_10000969
184 Ga0207684_10001021
185 Ga0207684_10002072
186 Ga0207684_10002096
187 Ga0207684_10005504
188 Ga0207684_10012008
189 Ga0207684_10017488
190 Ga0207684_10027054
191 Ga0207684_10029254
192 Ga0207671_10062928
193 Ga0207671_10124845
194 Ga0207646_10005901
195 Ga0207646_10010632
196 Ga0207646_10014781
197 Ga0207646_10022092
198 Ga0207646_10030530
199 Ga0207646_10033417
200 Ga0207646_10035931
201 Ga0207646_10045794
202 Ga0207646_10060335
203 Ga0207646_10105056
204 Ga0207646_10109796
205 Ga0207646_10119607
206 Ga0207646_10127772
207 Ga0207646_10242994
208 Ga0207700_10002918
209 Ga0207661_10000900
210 Ga0207661_10002799
211 Ga0207702_10022149
212 Ga0207676_10380275
213 Ga0207674_10000041
214 Ga0207674_10043396
215 Ga0373953_0005790
216 Ga0373961_0020119
217 Ga0373935_0302872
218 Ga0373947_0052326
219 Ga0495629_0205241
220 Ga0495658_0125360
221 Ga0496109_0472723
222 Ga0496110_0388087
223 Ga0496112_0005267
224 Ga0496112_0090174
225 Ga0496112_0092625
226 Ga0496112_0266256
227 Ga0496112_0308124
228 nmdc:mga05p37_251775_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12323

HTH_OrfB_IS605

Helix-turn-helix domain

5

49

0.95

PF01385

OrfB_IS605

Probable transposase

155

273

0.93

PF07282

OrfB_Zn_ribbon

Putative transposase DNA-binding domain

284

349

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ex9-assembly1.cif.gz_A isdra2 tnpb in complex with rerna and cognate dna, conformation 2 (ruvc domain unresolved) 0.8595 22 190
8ex9-assembly1.cif.gz_A isdra2 tnpb in complex with rerna and cognate dna, conformation 2 (ruvc domain unresolved) 0.8452 22 190
4ld7-assembly1.cif.gz_B crystal structure of anapt from neosartorya fischeri 0.6299 170 193
4ld7-assembly4.cif.gz_O crystal structure of anapt from neosartorya fischeri 0.6294 170 193
4ld7-assembly3.cif.gz_K crystal structure of anapt from neosartorya fischeri 0.6294 170 193
ID Description Score Start End Superfamily
af_A0A1D8PPQ0_1_179_3.20.190.10 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.5884 163 190 3.20.190.10
af_B0G0Z1_70_274_3.30.760.10 Alpha Beta;2-Layer Sandwich;RNA Cap, Translation Initiation Factor Eif4e;RNA Cap, Translation Initiation Factor Eif4e 0.5745 171 196 3.30.760.10
af_Q55FE0_38_245_3.30.760.10 Alpha Beta;2-Layer Sandwich;RNA Cap, Translation Initiation Factor Eif4e;RNA Cap, Translation Initiation Factor Eif4e 0.5631 172 197 3.30.760.10
af_A4I2V4_3_213_3.30.760.10 Alpha Beta;2-Layer Sandwich;RNA Cap, Translation Initiation Factor Eif4e;RNA Cap, Translation Initiation Factor Eif4e 0.5527 161 192 3.30.760.10
6cnzF00 Mainly Alpha;Up-down Bundle;Chorismate Mutase Domain, subunit A;Chorismate mutase 0.5472 39 122 1.20.59.10
ID Description Score Start End GO Terms
AF-A0A6B1EMM8-F1-model_v4 Transposase 0.9461 25 125 GO:0003677
AF-A0A352Y093-F1-model_v4 Transposase 0.9457 25 156
AF-A0A2W0B1V3-F1-model_v4 Transposase 0.9456 20 201
AF-A0A7C1A7B5-F1-model_v4 Transposase 0.9431 25 175
AF-W2EET3-F1-model_v4 deleted 0.9426 21 190

Map