F066481

General Info

Members Datasets Scaffolds Average Seq Length
111 111 222 1120

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2524023250|2524611128
Length 1172
Sequence KLRLTGFKSFVDQTELLIEPGMTGVVGPNGCGKSNLLEALRWAMGETSAKRMRGEDMDDVIFGGTATRPARNIAEVTMVLGNDARTAPPPFNEFDELEISRRLERGSGSDYRINGKIVRARDVQILFADNASGANSPALVSQGRVGALINARPADRRQLLEEAAGISGLHARRHEAELRLRAAETNLTRLEDVLGTMDAQLQTLRKQAKQAARYRNVQENIRQTEARLLHIRWQDAEATLDRARSGHAKADEAVRQAMLAGTALAENRAAIAATLPPKRQAEAEAASALQRLVLSREQLAAEEARVAEAQAATQRRLAQIASDLSRERALATDADNALLRLREERAQLLMAQEEEALEQEEAQEALLTARDAVEQADLALAALLEQAGAEETARNTHLGRLRDQQSRLAVLDKRLADQKAQEAQLRQGLADGLELATAEEALALAEESLEGAREEAEEAEAAKLEADRRLDQVRSDALTAQARSREALTQAESRYTRLKAERDGLRALLGLDEADLFPPLIDAVTVDTGYEQALAAALGDDLTAPLDAAANVYWQGLPPLPDHAALPAGVVPLSTHVKAPPAMARCLPYIGIATDAAQAASLAPRLLPGQMLVTRDGGAWRWDGLTRKPGAPTAAAIRLTQRNRLAELDLDLDAATEALDSARDRHATARQDAARAEADARQAQDRAAQRDKLAREAVRTGFRTVEQARDALSRRKAEMEAATARLDAIQGSLTALEADRAEVALAEAEAQALLDALPDAAIARDAIAQSRTRQGELRATLAARQARADQVLREAEQRRRRLSLLQQEEQGWATRVEGAASRLAELEERALEGREELETLAERPLAIAEERQILAAQIQTAERHRADALQALQESEAELAEAERARTQAETALADAREARAHAEAAVAQSLQHMQALAERIAEKLECEPHQIAAATGLDGMAEGERPDPAALEQRLSRLLEERERIGPVNLRAEQEVAEMETQIGTMTSEKDDLTAAIARLRQGINSLNREARERLLASFAKVDSHFQDLFTRLFGGGSAHLKLTEAEDPLDAGLEIYASPPGKKLQVLSLLSGGEQALTALALLFAVFLCNPAPICVLDEVDAPLDEANVGRFCDMVEEMARSGATRFLIVTHHRLTMARMDRLFGVTMMERGVSKLVSVDLARAAEMVES

Samples

Sample ID Description Type Environment
1 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
2 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
3 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
4 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
5 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
6 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
7 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
8 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
9 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
10 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
11 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
12 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
13 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
14 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
15 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
16 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
17 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
18 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
19 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
20 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
21 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
22 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
23 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
24 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
25 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
26 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
27 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
28 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
29 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
30 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
31 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
32 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
33 2643221583 Caulobacter sp. Root655 Isolate Unclassified
34 2643221584 Caulobacter sp. Root656 Isolate Unclassified
35 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
36 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
37 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
38 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
39 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
40 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
41 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
42 2643221640 Caulobacter sp. Root342 Isolate Unclassified
43 2643221642 Caulobacter sp. Root343 Isolate Unclassified
44 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
45 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
46 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
47 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
48 2713897090 Paracoccus sphaerophysae HAMBI 3106 Isolate Nodule
49 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
50 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
51 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
52 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
53 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
54 2739367664 Novosphingobium sp. GV002 Isolate Unclassified
55 2739367756 Asticcacaulis sp. CF398 Isolate Unclassified
56 2739367865 Novosphingobium sp. GV013 Isolate Unclassified
57 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
58 2775507255 Sphingobium indicum B90A Isolate Rhizosphere
59 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
60 2808606401 Sphingobium sp. AEW010 Isolate Rhizosphere
61 2808606404 Sphingobium sp. AEW013 Isolate Rhizosphere
62 2808606405 Sphingobium sp. AEW001 Isolate Rhizosphere
63 2818991435 Caulobacter henricii 536 Isolate Unclassified
64 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
65 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
66 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
67 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
68 2840878972 Albibacillus kandeliae J95 Isolate Rhizosphere
69 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
70 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
71 2849560528 Caulobacter zeae 410 Isolate Unclassified
72 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
73 2851153111 Caulobacter radicis 736 Isolate Unclassified
74 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
75 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
76 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified
77 2855020534 Paracoccus endophyticus SYSUP0003 Isolate Stem Tuber
78 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
79 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
80 2880518877 Sphingobium sp. JAI105 Isolate Rhizosphere
81 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
82 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
83 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber
84 2885429604 Sphingomonas sp. WZY 27 Isolate Rhizosphere
85 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
86 2896184354 Aurantiacibacter suaedae GH3-15 Isolate Rhizosphere
87 2896253425 Aurantiacibacter rhizosphaerae GH3-10 Isolate Rhizosphere
88 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
89 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
90 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
91 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
92 2899275550 Paracoccus hibiscisoli CCTCC AB2016182 Isolate Rhizosphere
93 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
94 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
95 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
96 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
97 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
98 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
99 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
100 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
101 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
102 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
103 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
104 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
105 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
106 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
107 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
108 3000405567 Rhodobacteraceae bacterium LNNU 3342 Isolate Rhizosphere
109 3000865235 Altericroceibacterium indicum DSM 18604 Isolate Rhizosphere
110 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere
111 8057132660 Paracoccus rhizosphaerae LMG 21293 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 14.41
Metatranscriptomes 0
Isolates 85.59

Biome Distribution

Category Percentage (%)
Aerial Root 4.5
Bulb 0
Endosphere 3.6
Nodule 0.9
Rhizoplane 1.8
Rhizosphere 45.05
Stem 0
Stem Tuber 1.8
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070695_100001495 3300005545 Bacteria 12971
2 Ga0075428_100018327 3300006844 Bacteria 7739
3 Ga0183365_10001 3300015684 Bacteria 2090444
4 Ga0395905_0001346 3300037471 Bacteria 29919
5 Ga0466969_0000099 3300044656 Bacteria 45600
6 Ga0466966_0000192 3300044684 Bacteria 40833
7 Ga0466971_0008393 3300044719 Bacteria 4506
8 Ga0466959_0000526 3300045049 Bacteria 22194
9 Ga0501046_0007141 3300049580 Bacteria 9825
10 Ga0501047_0042061 3300049581 Bacteria 4416
11 Ga0501048_0001086 3300049582 Bacteria 20394
12 nmdc:mga05p37_41152_c1 3300050507 Bacteria 5674
13 Ga0500635_0000770 3300053080 Bacteria 7990
14 Ga0500608_000352 3300053122 Bacteria 17766
15 Ga0500624_000004 3300053157 Bacteria 196921
16 Ga0500637_0000064 3300053178 Bacteria 37882
17 2524611128 2524023250 Bacteria 5457705
18 2511122712 2510917020 Bacteria 5657507
19 2511130829 2510917021 Bacteria 5705459
20 2512642267 2512564014 Bacteria 4639632
21 2585148940 2582581279 Bacteria 4980720
22 2585154021 2582581280 Bacteria 5994497
23 2585195014 2582581293 Bacteria 5907401
24 2585260115 2582581305 Bacteria 4895574
25 2587918987 2585428106 Bacteria 5179711
26 2600203466 2599185354 Bacteria 4398675
27 2600226878 2599185359 Bacteria 4772316
28 2643731576 2643221541 Bacteria 5498788
29 2643747192 2643221545 Bacteria 5083237
30 2643782406 2643221552 Bacteria 5708754
31 2643820248 2643221560 Bacteria 4801179
32 2643834566 2643221563 Bacteria 4726935
33 2643924351 2643221583 Bacteria 5218014
34 2643930944 2643221584 Bacteria 5511711
35 2643948743 2643221588 Bacteria 3692460
36 2643998361 2643221598 Bacteria 4578346
37 2644036750 2643221605 Bacteria 4772303
38 2644042096 2643221606 Bacteria 5588032
39 2644055492 2643221608 Bacteria 4724829
40 2644086781 2643221614 Bacteria 4260023
41 2644127513 2643221622 Bacteria 4212502
42 2644227599 2643221640 Bacteria 5258820
43 2644236883 2643221642 Bacteria 5357871
44 2644341735 2643221661 Bacteria 4267604
45 2644368022 2643221666 Bacteria 4265935
46 2644394261 2643221671 Bacteria 5496681
47 2644507611 2643221691 Bacteria 5093099
48 2715499022 2713897090 Bacteria 3353799
49 2738711623 2738541275 Bacteria 4830863
50 2738850048 2738541301 Bacteria 4834102
51 2738865777 2738541304 Bacteria 4833665
52 2739298295 2738543022 Bacteria 4835059
53 2739359973 2738543033 Bacteria 4833336
54 2739649235 2739367664 Bacteria 4114334
55 2739790126 2739367756 Bacteria 4553612
56 2740027708 2739367865 Bacteria 4114482
57 2753765735 2751185897 Bacteria 5322941
58 2778125681 2775507255 Bacteria 3945731
59 2792461453 2791355048 Bacteria 5832535
60 2809065306 2808606401 Bacteria 4586670
61 2809081302 2808606404 Bacteria 4652788
62 2809085667 2808606405 Bacteria 4586632
63 2819536127 2818991435 Bacteria 5433759
64 2819551331 2818991438 Bacteria 5793701
65 2819644520 2818991454 Bacteria 5563326
66 2819715674 2818991466 Bacteria 4748179
67 2830078471 2830075706 Bacteria 3855215
68 2840882457 2840878972 Bacteria 5483153
69 2843746158 2843744320 Bacteria 5659202
70 2848297474 2848297114 Bacteria 3608511
71 2849561589 2849560528 Bacteria 5393480
72 2849576412 2849573788 Bacteria 5421256
73 2851153904 2851153111 Bacteria 5542585
74 2852656265 2852653556 Bacteria 4050083
75 2852683358 2852680915 Bacteria 4100189
76 2854682295 2854681122 Bacteria 4548679
77 2855021964 2855020534 Bacteria 3204685
78 2857508595 2857504554 Bacteria 5369913
79 2879163779 2879163058 Bacteria 4223965
80 2880520850 2880518877 Bacteria 5012590
81 2882807278 2882806704 Bacteria 3007728
82 2884961392 2884960567 Bacteria 5437054
83 2885428922 2885427238 Bacteria 2291351
84 2885431011 2885429604 Bacteria 3642894
85 2895885972 2895880812 Bacteria 11255272
86 2896185324 2896184354 Bacteria 3258548
87 2896255719 2896253425 Bacteria 3418029
88 2896431364 2896429255 Bacteria 2557483
89 2898332116 2898329390 Bacteria 5168154
90 2898797856 2898795034 Bacteria 4294459
91 2899260116 2899259804 Bacteria 3320927
92 2899278006 2899275550 Bacteria 3958688
93 2919679287 2919679072 Bacteria 4629602
94 2919711174 2919709256 Bacteria 4318106
95 2928028466 2928027323 Bacteria 4382488
96 2928103776 2928100450 Bacteria 4837635
97 2928529693 2928526807 Bacteria 4760224
98 2928531683 2928531327 Bacteria 5101314
99 2928961704 2928959182 Bacteria 4725774
100 2928970821 2928968154 Bacteria 4633371
101 2946789828 2946787523 Bacteria 4366789
102 2984555958 2984555340 Bacteria 4247089
103 2984565938 2984564862 Bacteria 4339992
104 2990268315 2990265787 Bacteria 3943888
105 2993356945 2993356040 Bacteria 4247105
106 2993696653 2993693658 Bacteria 4040749
107 3000019406 3000017691 Bacteria 3772574
108 3000406623 3000405567 Bacteria 3779330
109 3000865354 3000865235 Bacteria 3106258
110 8054305338 8054302542 Bacteria 5698134
111 8057134228 8057132660 Bacteria 4061191
112 Ga0070695_100001495
113 Ga0075428_100018327
114 Ga0183365_10001
115 Ga0395905_0001346
116 Ga0466969_0000099
117 Ga0466966_0000192
118 Ga0466971_0008393
119 Ga0466959_0000526
120 Ga0501046_0007141
121 Ga0501047_0042061
122 Ga0501048_0001086
123 nmdc:mga05p37_41152_c1
124 Ga0500635_0000770
125 Ga0500608_000352
126 Ga0500624_000004
127 Ga0500637_0000064
128 2524611128
129 2511122712
130 2511130829
131 2512642267
132 2585148940
133 2585154021
134 2585195014
135 2585260115
136 2587918987
137 2600203466
138 2600226878
139 2643731576
140 2643747192
141 2643782406
142 2643820248
143 2643834566
144 2643924351
145 2643930944
146 2643948743
147 2643998361
148 2644036750
149 2644042096
150 2644055492
151 2644086781
152 2644127513
153 2644227599
154 2644236883
155 2644341735
156 2644368022
157 2644394261
158 2644507611
159 2715499022
160 2738711623
161 2738850048
162 2738865777
163 2739298295
164 2739359973
165 2739649235
166 2739790126
167 2740027708
168 2753765735
169 2778125681
170 2792461453
171 2809065306
172 2809081302
173 2809085667
174 2819536127
175 2819551331
176 2819644520
177 2819715674
178 2830078471
179 2840882457
180 2843746158
181 2848297474
182 2849561589
183 2849576412
184 2851153904
185 2852656265
186 2852683358
187 2854682295
188 2855021964
189 2857508595
190 2879163779
191 2880520850
192 2882807278
193 2884961392
194 2885428922
195 2885431011
196 2895885972
197 2896185324
198 2896255719
199 2896431364
200 2898332116
201 2898797856
202 2899260116
203 2899278006
204 2919679287
205 2919711174
206 2928028466
207 2928103776
208 2928529693
209 2928531683
210 2928961704
211 2928970821
212 2946789828
213 2984555958
214 2984565938
215 2990268315
216 2993356945
217 2993696653
218 3000019406
219 3000406623
220 3000865354
221 8054305338
222 8057134228

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02463

SMC_N

RecF/RecN/SMC N terminal domain

1

1157

0.99

PF06470

SMC_hinge

SMC proteins Flexible Hinge Domain

513

601

0.86

PF13476

AAA_23

AAA domain

1

229

0.64

Map