F061559

General Info

Members Datasets Scaffolds Average Seq Length
110 97 86 1401

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2721755487|2722728324
Length 1461
Sequence IIQFSVRNKLAIGLFILVWVGYGIYQLTKLPIDAVPDITNNQVQVITTAPSLGAEDVERLITFPVELAVSNVPEIKESRSMSRFGLSLITIVFEDGTDIYWARQQVTERLAQIEINKNASTPTLAPVTTGLGEIYQYVLKPQKGYEQTYSLADLRTIQDWTVRRQLLGTPGVADVATFGGELKQYEVAVNPSKLKALNISIIDIFTALENNNQNTGGAYIEKGPAVLYIRSVGLTKSIADINKIVVKDNGGVPILIHHVAEVRLGSAIRYGALTMAGQGEVCGGIVMMLKGGNSSDVIKIVKDKVDQIQKTLPKGVLIEPFLDRTKMVNNAIGTVEHNLLEGALIVILVLVLFLGNLRAGLIVASVIPLSLLFAISMMNTFGVSGNLMSLGALDFGLIVDGAVIIVEAILHHIHFSKKYKGIDSLSQQEMDQEVTSSASRMMNAAVFGQIIILIVYLPILSLTGIEGKMFKPMAQTVAFAILGAFILSLTYVPMISSLVVSKKLNHKPNISDRIMTRLERGYQNALTGALAIRKILVAITIALFAISIVVFSKMGGEFIPQLEEGDFAVETRLLVGTNLSTTINAIDRVSEALKNRYSEVEKIVSRIGSAEIPTDPMPIEGGDMIIVLKPKSEWKNAKSFVELAGKMSATAQEVMPGITTGFQFPVQMRFNELMTGAKQDVVCKIYGEDLDKLANYAQQLGDIAKTVKGTADWYIESVTGMPQIVIDYNRDEIAKYGLDIASINRTVNSAFAGASAGKIYEGEKSFDLVVRVGNEGRRNIEDVRNLQVTTAKGIQIPLSQIADIDEVEGPNQIQRENARRRIILGFNVRGRDVQSIVEELQQKVAAQLKMDTGYTLTYGGTFENLQQAKARLSIAVPIALLLIFGMLYFAFSSLKDGALIYTAIPLSAIGGVFALALRGMPFSISAGIGFIALFGVAVLNGIVLISEFNRIKKEGIITDMQELIMMGTRNRLRPVLMTAAVASLGFLPMALSNGAGAEVQRPLATVVIGGLISATFLTLFVLPALYLLFNKSDKALSKPNSAVTKIVLLVLLSCSFFQEGKISAQTINSTQHISLAQAIQRAEHNSPRIQQLRINEQAKEKLAKTGFDPSKLAISGDYGHVNSAYTDNRIGISQTVSFPAVYKKQTAVLKNELSLAHESTKFNLLEIRTAVKSLYFDYLAMGKRKELLLRADSLYRIFEAKTSKRFEVGAANILEQTAAQTQRQEINNQLKLLQKDLNITLNRFNFLLQDSIRYIPASDTIKYQEVMSIHPDLSSQAEALPAYKIAQLQTQTAHAQWQLERSKLLPEITIGYNSQTLQGVQTFRGQEVLYRSSDRLSYFSAGISVPLFFGAQSNRINAAKLAWKGQLKELEYVKSELKTESNNAIEQVEKYKEVLKYYEDRGLKHADTIFVTADKQFVNGEIDYLQWVILVNQAIAIQSEYINTLNSYNQAAIQLSKLYNE

Samples

Sample ID Description Type Environment
1 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
2 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
3 2818991437 Pedobacter terrae 518 Isolate Unclassified
4 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
5 2818991444 Filimonas endophytica 3197 Isolate Unclassified
6 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
7 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
8 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
9 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
10 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
11 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
12 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
13 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
14 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
15 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
16 2914759650 Rhizosphaericola mali Isolate Rhizosphere
17 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
18 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
19 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
20 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
21 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
22 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
23 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
24 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
25 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
26 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
27 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
28 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
29 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
30 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
31 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
34 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
36 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
37 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
38 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
39 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
55 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
56 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
57 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
58 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
59 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
61 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
62 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
63 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
65 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
70 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
75 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
78 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
81 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
82 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
83 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
84 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
85 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
86 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
87 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
88 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
89 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
90 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
93 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
94 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
95 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
96 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
97 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.18
Metatranscriptomes 0
Isolates 21.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.82
Nodule 0
Rhizoplane 0
Rhizosphere 52.73
Stem 0
Stem Tuber 0
Unclassified 25.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1000012 3300002738 Bacteria 287601
2 JGI25152J39213_1000168 3300002773 Bacteria 44576
3 JGI25150J39212_1000019 3300002774 Bacteria 135244
4 JGI25151J46595_10000074 3300003187 Bacteria 135244
5 JGI25153J46596_10000056 3300003215 Bacteria 135244
6 JGI25153J46596_10005944 3300003215 Bacteria 6289
7 rootH1_10033497 3300003316 Bacteria 14410
8 rootH1_10062012 3300003323 Bacteria 36023
9 rootH1_10115465 3300003323 Bacteria 9333
10 Ga0055536_1000003 3300003781 Bacteria 447744
11 Ga0055530_10001435 3300003791 Bacteria 17452
12 Ga0055531_10000068 3300003794 Bacteria 112187
13 Ga0065165_1000603 3300005262 Bacteria 52556
14 Ga0065165_1000699 3300005262 Bacteria 47796
15 Ga0065714_10064509 3300005288 Bacteria 45554
16 Ga0065712_10003883 3300005290 Bacteria 6826
17 Ga0070670_100020500 3300005331 Bacteria 5684
18 Ga0070675_100013946 3300005354 Bacteria 6326
19 Ga0070673_100004388 3300005364 Bacteria 8916
20 Ga0068859_100007177 3300005617 Bacteria 11311
21 Ga0068862_100014844 3300005844 Bacteria 6470
22 Ga0075431_100019067 3300006847 Bacteria 6989
23 Ga0097620_100007177 3300006931 Bacteria 11311
24 Ga0114129_10005781 3300009147 Bacteria 17514
25 Ga0114129_10035822 3300009147 Bacteria 7008
26 Ga0105237_10004580 3300009545 Bacteria 15963
27 Ga0105237_10016236 3300009545 Bacteria 7742
28 Ga0105238_10025629 3300009551 Bacteria 6011
29 Ga0105239_10003526 3300010375 Bacteria 19158
30 Ga0157373_10001358 3300013100 Bacteria 18786
31 Ga0157371_10000220 3300013102 Bacteria 83813
32 Ga0157369_10001340 3300013105 Bacteria 30410
33 Ga0157378_10018593 3300013297 Bacteria 6109
34 Ga0163162_10027407 3300013306 Bacteria 5634
35 Ga0163163_10000889 3300014325 Bacteria 25450
36 Ga0157380_10000491 3300014326 Bacteria 24096
37 Ga0157380_10004609 3300014326 Bacteria 9574
38 Ga0182008_10000572 3300014497 Bacteria 27252
39 Ga0157377_10000632 3300014745 Bacteria 14647
40 Ga0182006_1000159 3300015261 Bacteria 72265
41 Ga0182006_1004142 3300015261 Bacteria 7197
42 Ga0182005_1000091 3300015265 Bacteria 67859
43 Ga0183373_1004 3300015682 Bacteria 537398
44 Ga0209258_100036 3300025242 Bacteria 428859
45 Ga0207425_1000007 3300025245 Bacteria 777411
46 Ga0209646_1000009 3300025246 Bacteria 652154
47 Ga0209026_1000197 3300025250 Bacteria 84123
48 Ga0209148_1000139 3300025254 Bacteria 167011
49 Ga0209129_1000006 3300025258 Bacteria 777761
50 Ga0209676_1000001 3300025292 Bacteria 1852142
51 Ga0209676_1000675 3300025292 Bacteria 48431
52 Ga0209025_1000025 3300025294 Bacteria 524454
53 Ga0209758_1000016 3300025297 Bacteria 778557
54 Ga0209050_1000016 3300025298 Bacteria 729149
55 Ga0207426_1000032 3300025302 Bacteria 457997
56 Ga0209257_1000001 3300025304 Bacteria 2274655
57 Ga0207671_10008504 3300025914 Bacteria 8695
58 Ga0207674_10017261 3300026116 Bacteria 7875
59 Ga0207675_100000594 3300026118 Bacteria 35413
60 Ga0307515_10000010 3300028794 Bacteria 651586
61 Ga0316181_1024800 3300030744 Bacteria 22662
62 Ga0307509_10002733 3300031507 Bacteria 28113
63 Ga0307508_10000294 3300031616 Bacteria 61066
64 Ga0451577_0000329 3300042876 Bacteria 88404
65 Ga0466972_0000003 3300044658 Bacteria 391452
66 Ga0466972_0000039 3300044658 Bacteria 135618
67 Ga0466972_0011013 3300044658 Bacteria 4540
68 Ga0466957_0002276 3300044842 Bacteria 10280
69 Ga0451576_0000022 3300045051 Bacteria 495037
70 Ga0495661_0001258 3300046665 Bacteria 21865
71 Ga0495660_0002077 3300046810 Bacteria 12979
72 Ga0496116_0000079 3300048919 Bacteria 226744
73 Ga0496117_0001128 3300048920 Bacteria 40283
74 Ga0496118_0018845 3300048921 Bacteria 6196
75 Ga0496121_0000026 3300048924 Bacteria 450157
76 Ga0496122_0006771 3300048925 Bacteria 13035
77 Ga0496124_0007111 3300048927 Bacteria 11985
78 Ga0496125_0001078 3300048928 Bacteria 42016
79 Ga0501038_0021448 3300049574 Bacteria 5797
80 Ga0501225_0000400 3300049705 Bacteria 13739
81 nmdc:mga05p37_11707_c1 3300050507 Bacteria 10454
82 nmdc:mga05p37_38825_c1 3300050507 Bacteria 5842
83 nmdc:mga08y16_39439_c1 3300050511 Bacteria 4955
84 Ga0500583_0000075 3300053092 Bacteria 59561
85 Ga0500583_0000543 3300053092 Bacteria 11475
86 Ga0500622_0001944 3300053156 Bacteria 15557

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044658 Ga0466972_0011013 Ga0466972_0011013_971_4501 1027
2 3300013297 Ga0157378_10018593 Ga0157378_100185931 1127
3 3300005331 Ga0070670_100020500 Ga0070670_1000205002 1212
4 3300005354 Ga0070675_100013946 Ga0070675_1000139463 1212
5 3300013306 Ga0163162_10027407 Ga0163162_100274071 1212
6 3300014326 Ga0157380_10004609 Ga0157380_100046093 1212
7 3300026116 Ga0207674_10017261 Ga0207674_100172613 1212
8 3300005290 Ga0065712_10003883 Ga0065712_100038833 1213
9 3300005364 Ga0070673_100004388 Ga0070673_1000043883 1213
10 3300005617 Ga0068859_100007177 Ga0068859_1000071774 1213
11 3300005844 Ga0068862_100014844 Ga0068862_1000148442 1213
12 3300006931 Ga0097620_100007177 Ga0097620_1000071774 1213
13 3300014745 Ga0157377_10000632 Ga0157377_100006329 1213
14 3300026118 Ga0207675_100000594 Ga0207675_10000059428 1213
15 3300050511 nmdc:mga08y16_39439_c1 nmdc:mga08y16_39439_c1_510_4877 1213
16 3300003323 rootH1_10115465 rootH1_101154652 1246
17 3300049705 Ga0501225_0000400 Ga0501225_0000400_7894_12264 1248
18 3300044842 Ga0466957_0002276 Ga0466957_0002276_96_4466 1250
19 3300044658 Ga0466972_0000039 Ga0466972_0000039_12311_16672 1258
20 3300031507 Ga0307509_10002733 Ga0307509_100027333 1259
21 3300044658 Ga0466972_0000003 Ga0466972_0000003_141440_145810 1268
22 3300053092 Ga0500583_0000075 Ga0500583_0000075_13425_17792 1271
23 3300003781 Ga0055536_1000003 Ga0055536_1000003135 1273
24 3300003791 Ga0055530_10001435 Ga0055530_100014356 1273
25 3300014326 Ga0157380_10000491 Ga0157380_1000049114 1273
26 3300025292 Ga0209676_1000001 Ga0209676_1000001471 1273
27 3300025298 Ga0209050_1000016 Ga0209050_1000016136 1273
28 3300049574 Ga0501038_0021448 Ga0501038_0021448_1338_5702 1274
29 3300003316 rootH1_10033497 rootH1_100334977 1276
30 3300009545 Ga0105237_10004580 Ga0105237_100045806 1277
31 3300010375 Ga0105239_10003526 Ga0105239_100035267 1277
32 3300015261 Ga0182006_1004142 Ga0182006_10041423 1288
33 3300003794 Ga0055531_10000068 Ga0055531_1000006841 1293
34 3300025304 Ga0209257_1000001 Ga0209257_1000001492 1293
35 3300053092 Ga0500583_0000543 Ga0500583_0000543_2120_6511 1293
36 3300053156 Ga0500622_0001944 Ga0500622_0001944_11140_15489 1294
37 3300025242 Ga0209258_100036 Ga0209258_100036189 1296
38 3300025254 Ga0209148_1000139 Ga0209148_1000139107 1296
39 3300013105 Ga0157369_10001340 Ga0157369_1000134011 1297
40 3300045051 Ga0451576_0000022 Ga0451576_0000022_313633_317982 1297
41 3300048919 Ga0496116_0000079 Ga0496116_0000079_191907_196286 1297
42 3300048921 Ga0496118_0018845 Ga0496118_0018845_770_5149 1297
43 3300048927 Ga0496124_0007111 Ga0496124_0007111_270_4649 1297
44 3300048928 Ga0496125_0001078 Ga0496125_0001078_30081_34460 1297
45 3300003323 rootH1_10062012 rootH1_1006201238 1300
46 3300048924 Ga0496121_0000026 Ga0496121_0000026_26259_30584 1303
47 3300005262 Ga0065165_1000603 Ga0065165_100060326 1305
48 3300025292 Ga0209676_1000675 Ga0209676_100067525 1305
49 3300006847 Ga0075431_100019067 Ga0075431_1000190677 1308
50 3300009147 Ga0114129_10035822 Ga0114129_100358222 1308
51 3300013100 Ga0157373_10001358 Ga0157373_100013582 1308
52 3300028794 Ga0307515_10000010 Ga0307515_10000010403 1308
53 3300050507 nmdc:mga05p37_11707_c1 nmdc:mga05p37_11707_c1_6079_10434 1308
54 3300014497 Ga0182008_10000572 Ga0182008_1000057222 1313
55 3300014325 Ga0163163_10000889 Ga0163163_100008898 1315
56 3300046665 Ga0495661_0001258 Ga0495661_0001258_9857_14203 1315
57 3300025302 Ga0207426_1000032 Ga0207426_1000032247 1316
58 3300005262 Ga0065165_1000699 Ga0065165_100069940 1317
59 3300015261 Ga0182006_1000159 Ga0182006_10001598 1317
60 3300048920 Ga0496117_0001128 Ga0496117_0001128_28513_32910 1317
61 3300048925 Ga0496122_0006771 Ga0496122_0006771_8535_12932 1317
62 3300009545 Ga0105237_10016236 Ga0105237_100162362 1319
63 3300009551 Ga0105238_10025629 Ga0105238_100256294 1319
64 3300025914 Ga0207671_10008504 Ga0207671_100085047 1319
65 3300009147 Ga0114129_10005781 Ga0114129_100057813 1320
66 3300030744 Ga0316181_1024800 Ga0316181_102480021 1320
67 3300050507 nmdc:mga05p37_38825_c1 nmdc:mga05p37_38825_c1_594_4964 1320
68 3300031616 Ga0307508_10000294 Ga0307508_1000029433 1322
69 3300042876 Ga0451577_0000329 Ga0451577_0000329_16887_21236 1322
70 3300013102 Ga0157371_10000220 Ga0157371_1000022062 1324
71 3300015265 Ga0182005_1000091 Ga0182005_100009135 1324
72 3300015682 Ga0183373_1004 Ga0183373_1004323 1324
73 iso_pu_bacteria 2818991444 2819585883 1326
74 3300002773 JGI25152J39213_1000168 JGI25152J39213_100016823 1327
75 3300002774 JGI25150J39212_1000019 JGI25150J39212_100001957 1327
76 3300003187 JGI25151J46595_10000074 JGI25151J46595_1000007457 1327
77 3300003215 JGI25153J46596_10000056 JGI25153J46596_1000005657 1327
78 3300025245 Ga0207425_1000007 Ga0207425_1000007262 1327
79 3300025258 Ga0209129_1000006 Ga0209129_1000006262 1327
80 3300025294 Ga0209025_1000025 Ga0209025_100002592 1327
81 3300025297 Ga0209758_1000016 Ga0209758_1000016262 1327
82 3300046810 Ga0495660_0002077 Ga0495660_0002077_1367_5713 1329
83 iso_pu_bacteria 2890804823 2890807781 1330
84 iso_pu_bacteria 2903895155 2903897656 1330
85 iso_pu_bacteria 2958458903 2958461006 1330
86 iso_pu_bacteria 2958458903 2958463223 1330
87 iso_pu_bacteria 8055592153 8055592894 1330
88 iso_pu_bacteria 2839989709 2839990969 1331
89 iso_pu_bacteria 2914759650 2914760505 1331
90 iso_pu_bacteria 2881955468 2881957479 1332
91 iso_pu_bacteria 2958512119 2958512171 1332
92 3300003215 JGI25153J46596_10005944 JGI25153J46596_100059442 1333
93 iso_pu_bacteria 2977232053 2977232498 1334
94 iso_pu_bacteria 2821136567 2821142520 1335
95 iso_pu_bacteria 2842903701 2842909094 1335
96 iso_pu_bacteria 2884791551 2884795245 1335
97 iso_pu_bacteria 2904467357 2904470312 1335
98 iso_pu_bacteria 2721755487 2722728324 1337
99 iso_pu_bacteria 2818991442 2819576292 1337
100 iso_pu_bacteria 2522125168 2522551218 1338
101 iso_pu_bacteria 2818991437 2819546165 1340
102 iso_pu_bacteria 2818991460 2819681198 1340
103 iso_pu_bacteria 2904445276 2904446450 1340
104 iso_pu_bacteria 2929154850 2929155812 1340
105 iso_pu_bacteria 2919437846 2919439970 1341
106 iso_pu_bacteria 2929921140 2929924365 1341
107 3300005288 Ga0065714_10064509 Ga0065714_1006450935 1344
108 3300002738 JGI25154J39366_1000012 JGI25154J39366_1000012117 1346
109 3300025246 Ga0209646_1000009 Ga0209646_1000009159 1346
110 3300025250 Ga0209026_1000197 Ga0209026_100019756 1346

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

1

1030

0.98

PF02321

OEP

Outer membrane efflux protein

1272

1460

0.95

PF02321

OEP

Outer membrane efflux protein

1075

1249

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4k0e-assembly1.cif.gz_C x-ray crystal structure of a heavy metal efflux pump, crystal form ii 0.7804 5 1031
7b8q-assembly1.cif.gz_A acinetobacter baumannii multidrug transporter adeb in l*oo state 0.7798 6 1034
7b8q-assembly1.cif.gz_A acinetobacter baumannii multidrug transporter adeb in l*oo state 0.7784 6 1034
4k0e-assembly1.cif.gz_C x-ray crystal structure of a heavy metal efflux pump, crystal form ii 0.7781 5 1031
4k0j-assembly2.cif.gz_F x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.7759 6 1031
ID Description Score Start End Superfamily
af_P75830_95_182_6.10.140.1990 Special;Helix non-globular;Helix Hairpins; 0.9433 1157 1240 6.10.140.1990
af_P38054_335_507_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9432 342 504 1.20.1640.10
af_P24177_305_504_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9151 308 508 1.20.1640.10
af_Q2FVZ5_368_530_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9132 339 501 1.20.1640.10
2hrtC01 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9108 332 506 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A2V9IUP5-F1-model_v4 TolC family protein 0.9098 1127 1258 GO:0015562
AF-A0A3D2LA63-F1-model_v4 RND transporter 0.8659 1124 1297 GO:0015562
AF-A0A440II57-F1-model_v4 deleted 0.8626 222 611
AF-A0A3C1ZD81-F1-model_v4 Hydrophobe/amphiphile efflux-1 family RND transporter 0.8534 6 559 GO:0005886
GO:0042910
AF-S7VUJ9-F1-model_v4 Multidrug efflux protein, outer membrane component 0.8524 1081 1240 GO:0015562

Feature Viewer

pLDDT pTM Quality
71.99 0.52 Medium
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Predicted Structure (AlphaFold2)

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