F039713

General Info

Members Datasets Scaffolds Average Seq Length
106 32 204 533

Family's Representative Sequence

Representative Sequence 3300046559|Ga0495667_0026177|Ga0495667_0026177_1236_3092
Length 612
Sequence MTFPRQRPPALYGSSADEHSTGWTRRDWLAVTAVQTGALAALAPWRSTASGKLRSSVNRSSNVKARAAAHAELLDPGQSQQLAQQAVDAARSAGAQYADARLTRVVQQKYSLGFPPPTNEVHNARLLNTTGREPEMIGVGVRAMVNGYWGFSAFPLWGGIPGGTDAVVRLARDAVAQAKINSKGPMRAVEMGSVPVVKGVWSTPIKIDPFKVTIEEKMDTMAYWQYRAREIGMDFHKKRISYLNFARQERVVATSDGSLFTQILYESDCRILMWDDGKLLDDEVNAVKGLGIAAKGWEMLLEAGIPEQYPVIRAAQNAEDMTSKPAQIGRYTLVCDGATMSSVVAKTLGTATQLDRALGYEANAGGTSFIDDPLAMVGHYQVAAQPVTVTANRSAIAQLATVKWDDEGVEPEQFTLVKDGVLTDFQTTREQAAWLAPYYRQNGHPVRSHGCAGAENALKITMQMMPNLSMEPSHEAVGLNDLVSSVKDGILIEKCYVQSVDFQGRNGLLSGEVQYVGKMREIKNGKIGRRLRDGAVQFNTLDFWKHVLAVGGSSTTDITSESQYDIRNFTISLGINVDGALKGQPQQGTSYSSSAAAAMIANQAIINPRRKA

Samples

Sample ID Description Type Environment
1 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
14 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
15 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
16 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
19 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
20 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
21 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 15.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495667_0026177 3300046559 Bacteria 3929
2 Ga0070683_100143686 3300005329 Bacteria 2260
3 Ga0070680_100034640 3300005336 Unclassified 4072
4 Ga0070680_100069711 3300005336 Bacteria 2887
5 Ga0070668_100004023 3300005347 Bacteria 10873
6 Ga0070668_100005023 3300005347 Bacteria 9801
7 Ga0070668_100011139 3300005347 Bacteria 6696
8 Ga0070668_100012338 3300005347 Bacteria 6364
9 Ga0070668_100026392 3300005347 Bacteria 4408
10 Ga0070668_100027815 3300005347 Bacteria 4292
11 Ga0070668_100041015 3300005347 Bacteria 3545
12 Ga0070709_10001585 3300005434 Bacteria 12273
13 Ga0070709_10001644 3300005434 Bacteria 12114
14 Ga0070711_100000065 3300005439 Bacteria 62993
15 Ga0070711_100000172 3300005439 Bacteria 34549
16 Ga0070694_100047469 3300005444 Unclassified 2886
17 Ga0070694_100093369 3300005444 Bacteria 2115
18 Ga0070681_10004690 3300005458 Bacteria 13075
19 Ga0070681_10070081 3300005458 Unclassified 3472
20 Ga0070681_10083840 3300005458 Unclassified 3140
21 Ga0070707_100003409 3300005468 Bacteria 15017
22 Ga0070707_100004415 3300005468 Bacteria 13177
23 Ga0070707_100007040 3300005468 Bacteria 10429
24 Ga0070707_100029242 3300005468 Bacteria 5247
25 Ga0070698_100000122 3300005471 Bacteria 67115
26 Ga0070679_100010952 3300005530 Bacteria 8618
27 Ga0070679_100124180 3300005530 Bacteria 2564
28 Ga0070679_100140571 3300005530 Unclassified 2394
29 Ga0070679_100142138 3300005530 Unclassified 2378
30 Ga0070665_100173500 3300005548 Bacteria 2157
31 Ga0075436_100001737 3300006914 Bacteria 14914
32 Ga0105241_10000019 3300009174 Bacteria 147955
33 Ga0105241_10000020 3300009174 Bacteria 147039
34 Ga0105241_10000057 3300009174 Bacteria 84081
35 Ga0105237_10001949 3300009545 Bacteria 26287
36 Ga0105237_10002903 3300009545 Bacteria 20788
37 Ga0105237_10004188 3300009545 Bacteria 16796
38 Ga0105237_10007197 3300009545 Bacteria 12216
39 Ga0105237_10009918 3300009545 Bacteria 10162
40 Ga0105237_10010283 3300009545 Bacteria 9968
41 Ga0105237_10012305 3300009545 Bacteria 9017
42 Ga0105237_10013879 3300009545 Bacteria 8429
43 Ga0105237_10015312 3300009545 Bacteria 7987
44 Ga0105237_10018492 3300009545 Bacteria 7212
45 Ga0105237_10020643 3300009545 Bacteria 6786
46 Ga0105237_10033399 3300009545 Bacteria 5212
47 Ga0105237_10106454 3300009545 Bacteria 2796
48 Ga0105249_10000090 3300009553 Bacteria 127963
49 Ga0105249_10000101 3300009553 Bacteria 119072
50 Ga0105249_10000130 3300009553 Bacteria 99880
51 Ga0105249_10000182 3300009553 Bacteria 73467
52 Ga0105249_10000214 3300009553 Bacteria 66514
53 Ga0105239_10028901 3300010375 Bacteria 6094
54 Ga0105239_10030312 3300010375 Bacteria 5946
55 Ga0105239_10032644 3300010375 Bacteria 5720
56 Ga0105239_10086510 3300010375 Unclassified 3455
57 Ga0105239_10266968 3300010375 Bacteria 1924
58 Ga0182008_10002109 3300014497 Bacteria 12678
59 Ga0157379_10133377 3300014968 Bacteria 2237
60 Ga0157376_10009215 3300014969 Bacteria 7161
61 Ga0157376_10013462 3300014969 Bacteria 6103
62 Ga0207699_10010211 3300025906 Unclassified 4702
63 Ga0207684_10017100 3300025910 Bacteria 6225
64 Ga0207654_10000549 3300025911 Bacteria 21472
65 Ga0207707_10000337 3300025912 Bacteria 49489
66 Ga0207707_10001829 3300025912 Bacteria 19507
67 Ga0207707_10003919 3300025912 Bacteria 13212
68 Ga0207707_10090915 3300025912 Unclassified 2667
69 Ga0207671_10021028 3300025914 Unclassified 4958
70 Ga0207671_10022107 3300025914 Bacteria 4814
71 Ga0207671_10025547 3300025914 Unclassified 4436
72 Ga0207671_10032472 3300025914 Unclassified 3886
73 Ga0207671_10035094 3300025914 Unclassified 3724
74 Ga0207671_10038431 3300025914 Unclassified 3547
75 Ga0207671_10052854 3300025914 Bacteria 3011
76 Ga0207671_10058565 3300025914 Unclassified 2856
77 Ga0207671_10078838 3300025914 Bacteria 2467
78 Ga0207663_10000028 3300025916 Bacteria 101247
79 Ga0207663_10000131 3300025916 Bacteria 35702
80 Ga0207660_10016980 3300025917 Bacteria 4828
81 Ga0207660_10036200 3300025917 Unclassified 3431
82 Ga0207652_10014310 3300025921 Bacteria 6424
83 Ga0207652_10016110 3300025921 Bacteria 6096
84 Ga0207652_10046305 3300025921 Bacteria 3711
85 Ga0207646_10003856 3300025922 Bacteria 16651
86 Ga0207646_10004628 3300025922 Bacteria 14859
87 Ga0207646_10006073 3300025922 Bacteria 12581
88 Ga0207712_10000063 3300025961 Bacteria 133704
89 Ga0207712_10000065 3300025961 Bacteria 132282
90 Ga0207712_10000412 3300025961 Bacteria 36657
91 Ga0207712_10000489 3300025961 Bacteria 32934
92 Ga0207712_10001048 3300025961 Bacteria 19496
93 Ga0207668_10001716 3300025972 Bacteria 12825
94 Ga0207668_10003047 3300025972 Bacteria 9819
95 Ga0207668_10007794 3300025972 Bacteria 6371
96 Ga0207668_10009809 3300025972 Bacteria 5753
97 Ga0207668_10038739 3300025972 Bacteria 3202
98 Ga0495667_0000678 3300046559 Bacteria 21823
99 Ga0495667_0016107 3300046559 Bacteria 5053
100 Ga0495667_0020054 3300046559 Bacteria 4510
101 Ga0495667_0047246 3300046559 Bacteria 2844
102 nmdc:mga08x19_95680_c1 3300050514 Bacteria 1965
103 Ga0495667_0026177
104 Ga0070683_100143686
105 Ga0070680_100034640
106 Ga0070680_100069711
107 Ga0070668_100004023
108 Ga0070668_100005023
109 Ga0070668_100011139
110 Ga0070668_100012338
111 Ga0070668_100026392
112 Ga0070668_100027815
113 Ga0070668_100041015
114 Ga0070709_10001585
115 Ga0070709_10001644
116 Ga0070711_100000065
117 Ga0070711_100000172
118 Ga0070694_100047469
119 Ga0070694_100093369
120 Ga0070681_10004690
121 Ga0070681_10070081
122 Ga0070681_10083840
123 Ga0070707_100003409
124 Ga0070707_100004415
125 Ga0070707_100007040
126 Ga0070707_100029242
127 Ga0070698_100000122
128 Ga0070679_100010952
129 Ga0070679_100124180
130 Ga0070679_100140571
131 Ga0070679_100142138
132 Ga0070665_100173500
133 Ga0075436_100001737
134 Ga0105241_10000019
135 Ga0105241_10000020
136 Ga0105241_10000057
137 Ga0105237_10001949
138 Ga0105237_10002903
139 Ga0105237_10004188
140 Ga0105237_10007197
141 Ga0105237_10009918
142 Ga0105237_10010283
143 Ga0105237_10012305
144 Ga0105237_10013879
145 Ga0105237_10015312
146 Ga0105237_10018492
147 Ga0105237_10020643
148 Ga0105237_10033399
149 Ga0105237_10106454
150 Ga0105249_10000090
151 Ga0105249_10000101
152 Ga0105249_10000130
153 Ga0105249_10000182
154 Ga0105249_10000214
155 Ga0105239_10028901
156 Ga0105239_10030312
157 Ga0105239_10032644
158 Ga0105239_10086510
159 Ga0105239_10266968
160 Ga0182008_10002109
161 Ga0157379_10133377
162 Ga0157376_10009215
163 Ga0157376_10013462
164 Ga0207699_10010211
165 Ga0207684_10017100
166 Ga0207654_10000549
167 Ga0207707_10000337
168 Ga0207707_10001829
169 Ga0207707_10003919
170 Ga0207707_10090915
171 Ga0207671_10021028
172 Ga0207671_10022107
173 Ga0207671_10025547
174 Ga0207671_10032472
175 Ga0207671_10035094
176 Ga0207671_10038431
177 Ga0207671_10052854
178 Ga0207671_10058565
179 Ga0207671_10078838
180 Ga0207663_10000028
181 Ga0207663_10000131
182 Ga0207660_10016980
183 Ga0207660_10036200
184 Ga0207652_10014310
185 Ga0207652_10016110
186 Ga0207652_10046305
187 Ga0207646_10003856
188 Ga0207646_10004628
189 Ga0207646_10006073
190 Ga0207712_10000063
191 Ga0207712_10000065
192 Ga0207712_10000412
193 Ga0207712_10000489
194 Ga0207712_10001048
195 Ga0207668_10001716
196 Ga0207668_10003047
197 Ga0207668_10007794
198 Ga0207668_10009809
199 Ga0207668_10038739
200 Ga0495667_0000678
201 Ga0495667_0016107
202 Ga0495667_0020054
203 Ga0495667_0047246
204 nmdc:mga08x19_95680_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19289

PmbA_TldD_3rd

PmbA/TldA metallopeptidase C-terminal domain

328

575

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
5njf-assembly1.cif.gz_A e. coli microcin-processing metalloprotease tldd/e (tldd h262a mutant) with pentapeptide bound 0.8118 44 532
5njb-assembly2.cif.gz_C e. coli microcin-processing metalloprotease tldd/e with actinonin bound 0.8029 44 532
5njf-assembly2.cif.gz_C e. coli microcin-processing metalloprotease tldd/e (tldd h262a mutant) with pentapeptide bound 0.7994 44 532
5njc-assembly1.cif.gz_A e. coli microcin-processing metalloprotease tldd/e (tldd e263a mutant) with hexapeptide bound 0.7977 44 532
5njc-assembly2.cif.gz_D e. coli microcin-processing metalloprotease tldd/e (tldd e263a mutant) with hexapeptide bound 0.7951 43 532
ID Description Score Start End Superfamily
af_P71897_11_222_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.8576 41 241 3.30.2290.10
af_P71897_11_222_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.8118 41 241 3.30.2290.10
af_P0AGG8_13_239_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.6999 45 268 3.30.2290.10
af_Q58403_4_217_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.6983 52 266 3.30.2290.10
af_Q58403_4_217_3.30.2290.10 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.6955 52 266 3.30.2290.10
ID Description Score Start End GO Terms
AF-A0A381V288-F1-model_v4 Metalloprotease TldD/E C-terminal domain-containing protein 0.9293 263 535 GO:0005829
GO:0006508
GO:0008237
AF-A0A381V288-F1-model_v4 Metalloprotease TldD/E C-terminal domain-containing protein 0.9195 263 535 GO:0005829
GO:0006508
GO:0008237
AF-A0A7C2UG10-F1-model_v4 TldD/PmbA family protein 0.9166 286 533 GO:0005829
GO:0006508
GO:0008237
AF-A0A0S8G6G7-F1-model_v4 Peptidase C69 0.9093 328 533 GO:0005829
GO:0006508
GO:0008237
AF-A0A7J9QKP5-F1-model_v4 TldD/PmbA family protein 0.9076 46 537 GO:0005829
GO:0006508
GO:0008237

Map