F017308

General Info

Members Datasets Scaffolds Average Seq Length
102 85 102 187

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0272682|Ga0501047_0272682_309_962
Length 217
Sequence MDGWYPGRRLADNDQASHPMNDVTRLLSAIEHGDPRASEELLPLVYEELRRLARQRLARENPGQTLQATALVHEAYLRLVDAEKGQEWDSRGHFFAAAAEAMRRILVENARRKRSEKHGGRMERRDLDEVEIEVGVPPDDLLALDEALTKLAAEAPAKAEFVKLRYFTGLSVEEAGRVLGVSRATAERYWHYAKVWLFCELRGPEGPDEGPGIVPRP

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
33 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
34 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
35 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
36 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
37 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
38 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
39 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
40 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
41 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
42 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
43 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
44 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
45 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
46 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
47 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
48 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
49 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
50 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
51 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
52 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
53 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
54 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
55 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
56 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
57 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
58 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
59 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
60 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
61 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
62 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
63 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
64 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
65 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
66 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
74 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
75 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
76 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
77 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
81 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
82 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
83 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
84 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
85 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.92
Rhizosphere 94.12
Stem 0
Stem Tuber 0
Unclassified 1.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10153504 3300005290 Unclassified 1351
2 Ga0070689_100442506 3300005340 Bacteria 1105
3 Ga0070674_100163007 3300005356 Bacteria 1693
4 Ga0070667_100368271 3300005367 Bacteria 1303
5 Ga0070705_100076318 3300005440 Bacteria 2043
6 Ga0070694_100008400 3300005444 Bacteria 6316
7 Ga0070698_101059397 3300005471 Bacteria 759
8 Ga0070679_100356789 3300005530 Bacteria 1409
9 Ga0070684_100784726 3300005535 Bacteria 890
10 Ga0070686_100034288 3300005544 Bacteria 3126
11 Ga0068857_100006470 3300005577 Bacteria 10044
12 Ga0068864_101293083 3300005618 Bacteria 729
13 Ga0068858_100391926 3300005842 Bacteria 1334
14 Ga0068858_100649269 3300005842 Bacteria 1025
15 Ga0068860_100753863 3300005843 Unclassified 985
16 Ga0068862_100535748 3300005844 Unclassified 1116
17 Ga0068862_100921573 3300005844 Bacteria 860
18 Ga0070717_10144095 3300006028 Bacteria 2057
19 Ga0075428_100068416 3300006844 Bacteria 3884
20 Ga0075428_100082345 3300006844 Bacteria 3511
21 Ga0075428_100358891 3300006844 Bacteria 1563
22 Ga0075428_100379183 3300006844 Bacteria 1516
23 Ga0075428_100572458 3300006844 Bacteria 1207
24 Ga0075431_100242594 3300006847 Bacteria 1833
25 Ga0075433_10567721 3300006852 Bacteria 997
26 Ga0075429_101149252 3300006880 Bacteria 678
27 Ga0111539_10345215 3300009094 Bacteria 1733
28 Ga0111539_10654780 3300009094 Bacteria 1223
29 Ga0114129_10515954 3300009147 Bacteria 1559
30 Ga0163162_10039269 3300013306 Bacteria 4729
31 Ga0163162_10855719 3300013306 Unclassified 1024
32 Ga0163163_11390974 3300014325 Unclassified 763
33 Ga0207644_10051963 3300025931 Bacteria 2944
34 Ga0207658_10327479 3300025986 Bacteria 1328
35 Ga0207677_11069929 3300026023 Unclassified 734
36 Ga0207702_10044409 3300026078 Bacteria 3735
37 Ga0207641_10072693 3300026088 Bacteria 2962
38 Ga0207648_11022367 3300026089 Bacteria 774
39 Ga0268264_10759428 3300028381 Bacteria 966
40 Ga0265318_10065451 3300028577 Unclassified 1352
41 Ga0265338_10000198 3300028800 Bacteria 113584
42 Ga0265338_10000276 3300028800 Bacteria 93585
43 Ga0265338_10003960 3300028800 Bacteria 20406
44 Ga0265324_10022510 3300029957 Bacteria 2252
45 Ga0265324_10030471 3300029957 Unclassified 1892
46 Ga0265324_10145717 3300029957 Unclassified 804
47 Ga0265320_10169038 3300031240 Bacteria 983
48 Ga0265320_10297291 3300031240 Bacteria 714
49 Ga0265325_10000070 3300031241 Bacteria 71030
50 Ga0265340_10130366 3300031247 Bacteria 1154
51 Ga0265339_10000134 3300031249 Bacteria 60704
52 Ga0265331_10000546 3300031250 Bacteria 34350
53 Ga0265313_10002390 3300031595 Bacteria 16274
54 Ga0265314_10003645 3300031711 Bacteria 14812
55 Ga0307409_101187458 3300031995 Bacteria 786
56 Ga0373930_0003428 3300034816 Bacteria 2512
57 Ga0373954_0021293 3300035118 Bacteria 2935
58 Ga0373931_0552937 3300035691 Unclassified 748
59 Ga0373933_0044192 3300035724 Bacteria 2638
60 Ga0373937_0014979 3300036401 Bacteria 6851
61 Ga0373925_0451451 3300037068 Bacteria 1053
62 Ga0436364_1396866 3300037853 Bacteria 1548
63 Ga0451576_0109411 3300045051 Bacteria 2876
64 Ga0495629_0032415 3300046459 Bacteria 3700
65 Ga0495618_0001942 3300046514 Bacteria 13554
66 Ga0495652_0311363 3300046529 Bacteria 1141
67 Ga0495640_0332770 3300046533 Bacteria 939
68 Ga0495586_0016102 3300046535 Bacteria 3977
69 Ga0495645_0189209 3300046543 Bacteria 1404
70 Ga0495667_0152019 3300046559 Bacteria 1490
71 Ga0495634_0009633 3300046642 Bacteria 7116
72 Ga0495613_0005457 3300046689 Bacteria 9551
73 Ga0495674_0132820 3300047319 Bacteria 2097
74 Ga0495680_0031973 3300047322 Bacteria 4277
75 Ga0496102_1229381 3300048905 Unclassified 668
76 Ga0496112_0729830 3300048915 Unclassified 918
77 Ga0496115_0348961 3300048918 Bacteria 1207
78 Ga0496115_0538136 3300048918 Bacteria 935
79 Ga0496126_0404179 3300048929 Bacteria 1107
80 Ga0501031_0000040 3300049568 Bacteria 70808
81 Ga0501032_0092253 3300049569 Bacteria 2009
82 Ga0501033_0002142 3300049570 Bacteria 17074
83 Ga0501036_0521686 3300049572 Bacteria 988
84 Ga0501037_0106071 3300049573 Bacteria 2025
85 Ga0501043_0495536 3300049579 Bacteria 913
86 Ga0501047_0272682 3300049581 Bacteria 1538
87 Ga0501074_0366882 3300049590 Bacteria 1022
88 Ga0501075_0102841 3300049591 Bacteria 2170
89 Ga0501075_0518764 3300049591 Bacteria 909
90 Ga0501076_0346040 3300049592 Bacteria 1221
91 Ga0501083_0402832 3300049744 Bacteria 890
92 Ga0501035_0005101 3300049822 Bacteria 12440
93 Ga0501044_0000079 3300049823 Bacteria 117924
94 nmdc:mga05p37_409309_c1 3300050507 Bacteria 1581
95 nmdc:mga06r32_402898_c1 3300050510 Bacteria 1350
96 nmdc:mga08y16_276348_c1 3300050511 Bacteria 1733
97 nmdc:mga0a205_432673_c1 3300050515 Bacteria 1177
98 Ga0501084_0114119 3300054114 Bacteria 2271
99 Ga0501084_0336517 3300054114 Bacteria 1275
100 Ga0501082_0599355 3300060353 Unclassified 964
101 Ga0530510_0832298 3300061734 Bacteria 705
102 Ga0530510_0929334 3300061734 Bacteria 665

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300029957 Ga0265324_10022510 Ga0265324_100225101 148
2 3300005618 Ga0068864_101293083 Ga0068864_1012930831 154
3 3300026089 Ga0207648_11022367 Ga0207648_110223671 154
4 3300006028 Ga0070717_10144095 Ga0070717_101440951 166
5 3300035118 Ga0373954_0021293 Ga0373954_0021293_2252_2815 174
6 3300035724 Ga0373933_0044192 Ga0373933_0044192_785_1348 174
7 3300036401 Ga0373937_0014979 Ga0373937_0014979_2366_2929 174
8 3300046459 Ga0495629_0032415 Ga0495629_0032415_176_739 174
9 3300046514 Ga0495618_0001942 Ga0495618_0001942_8554_9117 174
10 3300046529 Ga0495652_0311363 Ga0495652_0311363_298_861 174
11 3300046535 Ga0495586_0016102 Ga0495586_0016102_797_1360 174
12 3300046559 Ga0495667_0152019 Ga0495667_0152019_707_1270 174
13 3300046642 Ga0495634_0009633 Ga0495634_0009633_232_795 174
14 3300046689 Ga0495613_0005457 Ga0495613_0005457_5383_5946 174
15 3300047319 Ga0495674_0132820 Ga0495674_0132820_590_1153 174
16 3300047322 Ga0495680_0031973 Ga0495680_0031973_963_1526 174
17 3300048918 Ga0496115_0348961 Ga0496115_0348961_577_1146 174
18 3300049590 Ga0501074_0366882 Ga0501074_0366882_458_1009 174
19 3300049591 Ga0501075_0518764 Ga0501075_0518764_322_873 174
20 3300049592 Ga0501076_0346040 Ga0501076_0346040_552_1103 174
21 3300061734 Ga0530510_0832298 Ga0530510_0832298_48_599 174
22 3300048929 Ga0496126_0404179 Ga0496126_0404179_204_767 175
23 3300049591 Ga0501075_0102841 Ga0501075_0102841_847_1419 175
24 3300054114 Ga0501084_0336517 Ga0501084_0336517_358_930 175
25 3300060353 Ga0501082_0599355 Ga0501082_0599355_95_667 175
26 3300005340 Ga0070689_100442506 Ga0070689_1004425062 179
27 3300005367 Ga0070667_100368271 Ga0070667_1003682712 179
28 3300005440 Ga0070705_100076318 Ga0070705_1000763183 179
29 3300005444 Ga0070694_100008400 Ga0070694_1000084001 179
30 3300005544 Ga0070686_100034288 Ga0070686_1000342882 179
31 3300013306 Ga0163162_10039269 Ga0163162_100392691 179
32 3300025931 Ga0207644_10051963 Ga0207644_100519632 179
33 3300025986 Ga0207658_10327479 Ga0207658_103274792 179
34 3300037068 Ga0373925_0451451 Ga0373925_0451451_283_831 179
35 3300005577 Ga0068857_100006470 Ga0068857_1000064701 180
36 3300005843 Ga0068860_100753863 Ga0068860_1007538632 180
37 3300014325 Ga0163163_11390974 Ga0163163_113909741 180
38 3300026023 Ga0207677_11069929 Ga0207677_110699292 180
39 3300026078 Ga0207702_10044409 Ga0207702_100444092 180
40 3300028800 Ga0265338_10000198 Ga0265338_1000019836 180
41 3300028800 Ga0265338_10000276 Ga0265338_100002762 180
42 3300028800 Ga0265338_10003960 Ga0265338_1000396012 180
43 3300029957 Ga0265324_10030471 Ga0265324_100304712 180
44 3300029957 Ga0265324_10145717 Ga0265324_101457171 180
45 3300031240 Ga0265320_10169038 Ga0265320_101690381 180
46 3300034816 Ga0373930_0003428 Ga0373930_0003428_1880_2440 180
47 3300035691 Ga0373931_0552937 Ga0373931_0552937_50_607 180
48 3300045051 Ga0451576_0109411 Ga0451576_0109411_1060_1617 180
49 3300046543 Ga0495645_0189209 Ga0495645_0189209_798_1358 180
50 3300005471 Ga0070698_101059397 Ga0070698_1010593971 181
51 3300005535 Ga0070684_100784726 Ga0070684_1007847261 181
52 3300005844 Ga0068862_100535748 Ga0068862_1005357481 181
53 3300006844 Ga0075428_100068416 Ga0075428_1000684162 181
54 3300006844 Ga0075428_100082345 Ga0075428_1000823452 181
55 3300006844 Ga0075428_100358891 Ga0075428_1003588912 181
56 3300006844 Ga0075428_100572458 Ga0075428_1005724582 181
57 3300006847 Ga0075431_100242594 Ga0075431_1002425942 181
58 3300006852 Ga0075433_10567721 Ga0075433_105677211 181
59 3300006880 Ga0075429_101149252 Ga0075429_1011492521 181
60 3300009094 Ga0111539_10345215 Ga0111539_103452153 181
61 3300009094 Ga0111539_10654780 Ga0111539_106547801 181
62 3300009147 Ga0114129_10515954 Ga0114129_105159541 181
63 3300013306 Ga0163162_10855719 Ga0163162_108557191 181
64 3300026088 Ga0207641_10072693 Ga0207641_100726932 181
65 3300028577 Ga0265318_10065451 Ga0265318_100654512 181
66 3300031240 Ga0265320_10297291 Ga0265320_102972911 181
67 3300031241 Ga0265325_10000070 Ga0265325_1000007025 181
68 3300031247 Ga0265340_10130366 Ga0265340_101303662 181
69 3300031249 Ga0265339_10000134 Ga0265339_1000013419 181
70 3300031250 Ga0265331_10000546 Ga0265331_1000054610 181
71 3300031595 Ga0265313_10002390 Ga0265313_100023903 181
72 3300031711 Ga0265314_10003645 Ga0265314_100036453 181
73 3300037853 Ga0436364_1396866 Ga0436364_1396866_262_846 181
74 3300046533 Ga0495640_0332770 Ga0495640_0332770_267_842 181
75 3300048905 Ga0496102_1229381 Ga0496102_1229381_45_599 181
76 3300048915 Ga0496112_0729830 Ga0496112_0729830_64_621 181
77 3300048918 Ga0496115_0538136 Ga0496115_0538136_193_768 181
78 3300049568 Ga0501031_0000040 Ga0501031_0000040_56742_57335 181
79 3300049569 Ga0501032_0092253 Ga0501032_0092253_916_1509 181
80 3300049570 Ga0501033_0002142 Ga0501033_0002142_16420_17013 181
81 3300049573 Ga0501037_0106071 Ga0501037_0106071_1283_1876 181
82 3300049579 Ga0501043_0495536 Ga0501043_0495536_223_816 181
83 3300049744 Ga0501083_0402832 Ga0501083_0402832_47_604 181
84 3300049822 Ga0501035_0005101 Ga0501035_0005101_9817_10410 181
85 3300049823 Ga0501044_0000079 Ga0501044_0000079_52158_52751 181
86 3300050507 nmdc:mga05p37_409309_c1 nmdc:mga05p37_409309_c1_106_768 181
87 3300050510 nmdc:mga06r32_402898_c1 nmdc:mga06r32_402898_c1_662_1228 181
88 3300050511 nmdc:mga08y16_276348_c1 nmdc:mga08y16_276348_c1_148_717 181
89 3300050515 nmdc:mga0a205_432673_c1 nmdc:mga0a205_432673_c1_280_846 181
90 3300061734 Ga0530510_0929334 Ga0530510_0929334_46_609 181
91 3300005842 Ga0068858_100649269 Ga0068858_1006492692 182
92 3300006844 Ga0075428_100379183 Ga0075428_1003791832 182
93 3300031995 Ga0307409_101187458 Ga0307409_1011874582 182
94 3300049572 Ga0501036_0521686 Ga0501036_0521686_263_826 182
95 3300005530 Ga0070679_100356789 Ga0070679_1003567892 183
96 3300054114 Ga0501084_0114119 Ga0501084_0114119_1278_1859 183
97 3300049581 Ga0501047_0272682 Ga0501047_0272682_309_962 184
98 3300005842 Ga0068858_100391926 Ga0068858_1003919262 185
99 3300005844 Ga0068862_100921573 Ga0068862_1009215731 185
100 3300028381 Ga0268264_10759428 Ga0268264_107594281 185
101 3300005290 Ga0065712_10153504 Ga0065712_101535042 186
102 3300005356 Ga0070674_100163007 Ga0070674_1001630072 186

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07638

Sigma70_ECF

ECF sigma factor

20

203

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bhy-assembly1.cif.gz_B dna-binding domain of deor in complex with the dna operator 0.9845 140 178
2w48-assembly1.cif.gz_A crystal structure of the full-length sorbitol operon regulator sorc from klebsiella pneumoniae 0.9649 142 176
4go1-assembly1.cif.gz_B-2 crystal structure of full length transcription repressor lsrr from e. coli. 0.9614 141 179
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9123 126 185
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9041 125 182
ID Description Score Start End Superfamily
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9004 126 182 1.10.10.10
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8994 126 182 1.10.10.10
1or7A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8987 123 185 1.10.10.10
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8967 123 183 1.10.10.10
2h27D00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8963 123 185 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0Q6WPY9-F1-model_v4 RNA polymerase sigma-70 ECF-like HTH domain-containing protein 0.8928 6 185 GO:0006352
GO:0016987
AF-A0A350URJ4-F1-model_v4 RNA polymerase subunit sigma-70 0.8867 15 185 GO:0006352
GO:0016987
AF-A0A2V9XZZ1-F1-model_v4 RNA polymerase subunit sigma-70 0.8854 20 185 GO:0006352
GO:0016987
AF-A0A1E4BA75-F1-model_v4 RNA polymerase sigma-70 ECF-like HTH domain-containing protein 0.8811 18 185 GO:0003700
GO:0006352
AF-A0A1Q6VG26-F1-model_v4 RNA polymerase sigma-70 ECF-like HTH domain-containing protein 0.8703 14 185 GO:0006352
GO:0016987

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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